| Literature DB >> 29849817 |
Yevhen I Dubovyk1, Tetyana B Oleshko1, Viktoriia Yu Harbuzova2, Alexander V Ataman1.
Abstract
There are a lot of convincing evidences about the involvement of endothelin pathway proteins in the pathogenesis of atherosclerosis and its fatal complications. In this study, the analysis of a possible association between EDN1 rs5370 and EDNRA rs5335 gene polymorphisms and the risk of large artery stroke (LAS) in a Ukrainian population was conducted. 200 LAS patients and 200 unrelated controls were enrolled in a case-control study. The polymerase chain reaction-restriction fragment length polymorphism method (PCR-RFLP) was used for SNP genotyping. Our results revealed that EDN1 rs5370 polymorphism was associated with LAS development both before and after adjustment for atherosclerosis risk factors (sex, age, body mass index, arterial hypertension, type 2 diabetes mellitus, and smoking). The risk for a LAS incident in rs5370-T allele carriers was 1.6 times higher (CI = 1.066-2.403; P = 0.020) than in subjects with the GG genotype. No link between EDNRA rs5335 and LAS risk in a Ukrainian population was found. The present study indicated that EDN1 rs5370, but not EDNRA rs5335, can be the strong genetic predictor for LAS development in a Ukrainian population.Entities:
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Year: 2018 PMID: 29849817 PMCID: PMC5903200 DOI: 10.1155/2018/1695782
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
PCR conditions for EDN1 rs5370 and EDNRA rs5335 genotyping.
| Gene | SNP | Primer nucleotide sequence | Thermocycling conditions | PCR amplicon size | ||
|---|---|---|---|---|---|---|
| D | H | E | ||||
|
| rs5370 | F: 5′-TCTTGCTTTATTAGGTCGGAGACC-3′ | 94°С (60 s) | 61°С (60 s) | 72°С (45 s) | 262 bp |
|
| ||||||
|
| rs5335 | F: 5′-TAGAAGCACTCCTCGGTACTCC-3′ | 94°С (50 s) | 60°С (40 s) | 72°С (60 s) | 174 bp |
Annotation: F: forward; R: reverse; D: denaturation; H: hybridization; E: elongation; bp: base pairs.
Figure 1Results of EDN1 rs5370 polymorphism restriction analysis. M—molecular marker (bp—base pairs); lanes 3, 4, 5, and 8—GG genotype; lanes 6, 7, 10, and 11—GT genotype; lanes 1, 2, and 9—TT genotype.
Figure 2Results of EDNRA rs5335 polymorphism restriction analysis. M—molecular marker (bp—base pairs); lanes 8 and 10—CC genotype; lanes 1, 2, 3, 4, 5, 6, and 11—CG genotype; lanes 7 and 9—GG genotype.
General characteristics of the study population.
| Parameter | Cases | Controls |
|
|---|---|---|---|
| Age, years | 66.7 ± 10.1 | 68.1 ± 13.9 | 0.261 |
| Sex, female/male | 89/111 | 75/125 | 0.155 |
| Body mass index, kg/m2 | 27.9 ± 3.7 | 27.3 ± 4.6 | 0.105 |
| Systolic BPs, mmHg | 167.9 ± 28.7 | 151.7 ± 22.6 | <0.001 |
| Diastolic BP, mmHg | 96.0 ± 15.5 | 86.5 ± 11.7 | <0.001 |
| Pulse BP, mmHg | 71.9 ± 22.4 | 65.2 ± 17.2 | 0.002 |
| Mean BPs, mmHg | 119.9 ± 17.9 | 108.3 ± 14.0 | <0.001 |
| Fasting glucose, mmol/L | 6.05 ± 1.5 | 5.25 ± 0.7 | <0.001 |
| Total cholesterol, mmol/L | 4.98 ± 1.46 | 4.75 ± 1.52 | 0.124 |
| HDL cholesterol, mmol/L | 1.01 ± 0.29 | 1.09 ± 0.38 | 0.018 |
| LDL cholesterol, mmol/L | 3.16 ± 1.39 | 2.94 ± 1.17 | 0.087 |
| Triglyceride, mmol/L | 1.67 ± 0.78 | 1.54 ± 0.66 | 0.073 |
| Current smokers, | 60 (30.0) | 55 (27.5) | 0.581 |
| T2DM, | 50 (25.0) | 19 (9.5) | <0.001 |
| Arterial hypertension, | 150 (75.0) | 116 (58.0) | <0.001 |
Categorical variables were compared by χ2 test, continuous variables by t-test.
Distributions of genotypes and alleles in case and control groups.
| Gene | SNP | LAS | Control |
|
| |||
|---|---|---|---|---|---|---|---|---|
|
| % |
| % | |||||
|
| rs5370 | Genotypes | ||||||
| GG | 94 | 47.0 | 118 | 59.0 | — | 0.006 | ||
| GT | 80 | 40.0 | 72 | 36.0 | ||||
| TT | 26 | 13.0 | 10 | 5.0 | ||||
| Alleles | ||||||||
| G | 268 | 67.0 | 308 | 77.0 | 0.991 | 0.002 | ||
| T | 132 | 33.0 | 92 | 23.0 | ||||
|
| ||||||||
|
| rs5335 | Genotypes | ||||||
| CC | 53 | 26.5 | 64 | 32.0 | — | 0.391 | ||
| CG | 114 | 57.0 | 101 | 50.5 | ||||
| GG | 33 | 16.5 | 35 | 17.5 | ||||
| Alleles | ||||||||
| C | 220 | 55.0 | 229 | 57.3 | 0.939 | 0.521 | ||
| G | 180 | 45.0 | 171 | 42.7 | ||||
Analysis of EDN1 rs5370 and EDNRA rs5335 genotypic association with LAS.
| Gene | SNP | Model |
| ORc (95% CI) |
| ORa (95% CI) |
|---|---|---|---|---|---|---|
|
| rs5370 | Dominant | 0.012 | 1.657 (1.115–2.462) | 0.020 | 1.601 (1.066–2.403) |
| Recessive | 0.007 | 2.839 (1.331–6.057) | 0.003 | 3.251 (1.492–7.084) | ||
| Additivea | 0.096 | 1.426 (0.938–2.168) | 0.198 | 1.328 (0.862–2.046) | ||
| 0.003 | 3.291 (1.512–7.165) | 0.002 | 3.637 (1.639–8.073) | |||
|
| ||||||
|
| rs5335 | Dominant | 0.189 | 1.335 (0.867–2.056) | 0.110 | 1.440 (0.921–2.251) |
| Recessive | 0.790 | 0.932 (0.553–1.570) | 0.767 | 0.922 (0.539–1.578) | ||
| Additive | 0.146 | 1.398 (0.890–2.196) | 0.078 | 1.522 (0.954–2.429) | ||
| 0.634 | 1.156 (0.636–2.103) | 0.545 | 1.210 (0.652–2.245) | |||
SNP: single nucleotide polymorphism; CI: confidence interval; Pc: crude P value; ORc: crude odds ratio; Pa: P value adjusted for age, sex, body mass index, arterial hypertension, type 2 diabetes mellitus, and smoking; ORa: adjusted odds ratio. aUpper row in the additive model of inheritance—comparison between Aa and AA genotypes; lower row—between aa and AA genotypes.
Analysis of EDN1 rs5370 and EDNRA rs5335 genotypic association with LAS in male and female subjects.
| Model |
| ORc (95% CI) |
| ORa (95% CI) | |
|---|---|---|---|---|---|
|
| |||||
| Female | Dominant | 0.021 | 2.090 (1.119–3.903) | 0.014 | 2.437 (1.202–4.940) |
| Recessive | 0.312 | 2.049 (0.511–8.218) | 0.086 | 3.824 (0.828–17.667) | |
| Additive | 0.034 | 2.008 (1.055–3.823) | 0.042 | 2.135 (1.079–4.393) | |
| 0.149 | 2.852 (0.681–11.827) | 0.018 | 5.634 (1.157–27.436) | ||
| Male | Dominant | 0.231 | 1.371 (0.818–2.297) | 0.236 | 1.375 (0.812–2.330) |
| Recessive | 0.007 | 3.481 (1.404–8.635) | 0.007 | 3.512 (1.401–8.806) | |
| Additive | 0.939 | 1.022 (0.581–1.800) | 0.952 | 1.018 (0.571–1.815) | |
| 0.008 | 3.510 (1.382–8.913) | 0.009 | 3.535 (1.377–9.076) | ||
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|
| |||||
| Female | Dominant | 0.220 | 1.523 (0.778–2.981) | 0.065 | 2.012 (0.956–4.230) |
| Recessive | 0.273 | 1.579 (0.698–3.572) | 0.351 | 1.515 (0.633–3.629) | |
| Additive | 0.352 | 1.398 (0.691–2.831) | 0.105 | 1.921 (0.873–4.226) | |
| 0.159 | 1.953 (0.770–4.952) | 0.111 | 2.256 (0.829–6.136) | ||
| Male | Dominant | 0.482 | 1.224 (0.696–2.153) | 0.514 | 1.210 (0.682–2.148) |
| Recessive | 0.172 | 0.607 (0.297–1.242) | 0.217 | 0.631 (0.304–1.310) | |
| Additive | 0.257 | 1.405 (0.780–2.529) | 0.299 | 1.373 (0.755–2.494) | |
| 0.505 | 0.758 (0.336–1.710) | 0.549 | 0.776 (0.339–1.777) | ||
See Table 4; Pa: P value adjusted for age, body mass index, arterial hypertension, type 2 diabetes mellitus, and smoking.
Analysis of EDN1 rs5370 and EDNRA rs5335 genotypic association with LAS in subjects with and without arterial hypertension.
| Model |
| ORc (95% CI) |
| ORa (95% CI) | |
|---|---|---|---|---|---|
|
| |||||
| Nonhypertensive | Dominant | 0.262 | 1.500 (0.739–3.046) | 0.201 | 1.624 (0.773–3.411) |
| Recessive | 0.125 | 2.572 (0.770–8.593) | 0.118 | 2.685 (0.778–9.269) | |
| Additive | 0.556 | 1.259 (0.584–2.714) | 0.470 | 1.348 (0.600–3.029) | |
| 0.104 | 2.800 (0.810–9.680) | 0.093 | 2.980 (0.834–10.650) | ||
| Hypertensive | Dominant | 0.045 | 1.649 (1.011–2.689) | 0.036 | 1.711 (1.035–2.829) |
| Recessive | 0.024 | 3.220 (1.164–8.903) | 0.008 | 4.102 (1.448–11.617) | |
| Additive | 0.188 | 1.411 (0.845–2.354) | 0.212 | 1.400 (0.825–2.374) | |
| 0.013 | 3.744 (1.322–10.607) | 0.004 | 4.743 (1.633–13.776) | ||
|
| |||||
|
| |||||
| Nonhypertensive | Dominant | 0.170 | 1.793 (0.779–4.125) | 0.132 | 1.962 (0.817–4.717) |
| Recessive | 0.443 | 1.457 (0.558–3.806) | 0.531 | 1.371 (0.512–3.672) | |
| Additive | 0.218 | 1.715 (0.727–4.048) | 0.159 | 1.909 (0.776–4.698) | |
| 0.196 | 2.127 (0.678–6.676) | 0.198 | 2.190 (0.664–7.221) | ||
| Hypertensive | Dominant | 0.386 | 1.260 (0.747–2.126) | 0.271 | 1.353 (0.790–2.318) |
| Recessive | 0.325 | 0.730 (0.390–1.366) | 0.317 | 0.718 (0.376–1.373) | |
| Additive | 0.214 | 1.420 (0.816–2.471) | 0.135 | 1.545 (0.873–2.735) | |
| 0.788 | 0.970 (0.445–1.850) | 0.864 | 0.938 (0.449–1.958) | ||
See Table 4; Pa: P value adjusted for age, sex, body mass index, type 2 diabetes mellitus, and smoking.
Characteristics of the LAS subjects stratified by EDN1 rs5370 genotype.
| Parameter | Genotype |
|
| ||
|---|---|---|---|---|---|
| GG ( | GT ( | TT ( | |||
| Body mass index, kg/m2 | 28.1 ± 3.6 | 27.6 ± 3.8 | 28.4 ± 3.9 | 0.448 | 0.647 |
| Systolic BP, mmHg | 165.1 ± 29.3 | 171.3 ± 28.8 | 167.5 ± 25.9 | 0.372 | 0.642 |
| Diastolic BP, mmHg | 94.4 ± 14.9 | 99.3 ± 16.2 | 91.7 ± 13.3 | 0.034a | 0.429 |
| Pulse BP, mmHg | 70.7 ± 20.2 | 71.9 ± 24.8 | 75.8 ± 22.5 | 0.600 | 0.720 |
| Mean BP, mmHg | 117.9 ± 18.5 | 123.3 ± 17.8 | 116.9 ± 15.2 | 0.099 | 0.429 |
| Total cholesterol, mmol/L | 4.91 ± 1.4 | 5.15 ± 1.6 | 4.74 ± 1.3 | 0.374 | 0.641 |
| HDL cholesterol, mmol/L | 1.02 ± 0.31 | 1.01 ± 0.31 | 0.96 ± 0.25 | 0.610 | 0.720 |
| LDL cholesterol, mmol/L | 3.10 ± 1.3 | 3.33 ± 1.5 | 2.89 ± 1.3 | 0.347 | 0.642 |
| Triglyceride, mmol/L | 1.65 ± 0.8 | 1.71 ± 0.8 | 1.58 ± 0.7 | 0.750 | 0.812 |
| Prothrombin time, s | 9.47 ± 2.0 | 9.38 ± 2.0 | 9.29 ± 2.0 | 0.900 | 0.900 |
| Thrombin time, s | 16.71 ± 3.7 | 16.49 ± 3.5 | 17.60 ± 4.0 | 0.395 | 0.642 |
| Fibrinogen, g/L | 4.21 ± 1.3 | 3.93 ± 1.2 | 3.64 ± 1.3 | 0.089 | 0.429 |
| Fasting glucose, mmol/L | 6.17 ± 1.7 | 6.06 ± 1.4 | 5.59 ± 1.0 | 0.236 | 0.642 |
n: number of cases; BP: blood pressure; HDL: high-density lipoprotein; LDL: low-density lipoprotein; PFDR: P value after false discovery rate adjustment. aNonsignificant difference between GG and GT genotypes (P = 0.103) and between TT and GT genotypes (P = 0.087) by Bonferroni post hoc test.
Characteristics of the LAS patients stratified by EDNRA rs5335 genotype.
| Parameter | Genotype |
|
| ||
|---|---|---|---|---|---|
| CC ( | CG ( | GG ( | |||
| Body mass index, kg/m2 | 28.7 ± 3.3 | 27.7 ± 3.8 | 27.6 ± 3.6 | 0.251 | 0.566 |
| Systolic BP, mmHg | 169.5 ± 26.9 | 167.3 ± 28.6 | 167.3 ± 32.2 | 0.888 | 0.914 |
| Diastolic BP, mmHg | 96.9 ± 12.7 | 96.7 ± 16.0 | 91.9 ± 17.3 | 0.261 | 0.566 |
| Pulse BP, mmHg | 72.6 ± 21.4 | 70.6 ± 21.6 | 75.3 ± 26.5 | 0.548 | 0.745 |
| Mean BP, mmHg | 121.2 ± 15.6 | 120.2 ± 18.5 | 117.1 ± 19.7 | 0.573 | 0.745 |
| Total cholesterol, mmol/L | 5.18 ± 1.6 | 5.01 ± 1.4 | 4.64 ± 1.4 | 0.257 | 0.566 |
| HDL cholesterol, mmol/L | 0.95 ± 0.31 | 1.02 ± 0.30 | 1.07 ± 0.27 | 0.179 | 0.566 |
| LDL cholesterol, mmol/L | 3.37 ± 1.5 | 3.18 ± 1.4 | 2.83 ± 1.3 | 0.235 | 0.566 |
| Triglyceride, mmol/L | 1.78 ± 0.8 | 1.66 ± 0.8 | 1.54 ± 0.7 | 0.383 | 0.671 |
| Prothrombin time, s | 9.81 ± 2.2 | 9.26 ± 1.9 | 9.31 ± 1.9 | 0.252 | 0.566 |
| Thrombin time, s | 16.63 ± 3.2 | 16.72 ± 3.6 | 16.96 ± 4.3 | 0.914 | 0.914 |
| Fibrinogen, g/L | 3.95 ± 1.5 | 4.01 ± 1.2 | 4.00 ± 1.3 | 0.878 | 0.912 |
| Fasting glucose, mmol/L | 6.29 ± 1.8 | 5.99 ± 1.3 | 5.89 ± 1.5 | 0.413 | 0.671 |
See Table 7.