| Literature DB >> 29849611 |
Martin Omulindi Oyugi1, Johnson Kangethe Kinyua1, Esther Nkirote Magiri2, Milcah Wagio Kigoni3, Evenilton Pessoa Costa4, Naftaly Wang'ombe Githaka5.
Abstract
Ticks cause approximately $17-19 billion economic losses to the livestock industry globally. Development of recombinant antitick vaccine is greatly hindered by insufficient knowledge and understanding of proteins expressed by ticks. Ticks secrete immunosuppressant proteins that modulate the host's immune system during blood feeding; these molecules could be a target for antivector vaccine development. Recombinant p36, a 36 kDa immunosuppressor from the saliva of female Dermacentor andersoni, suppresses T-lymphocytes proliferation in vitro. To identify potential unique structural and dynamic properties responsible for the immunosuppressive function of p36 proteins, this study utilized bioinformatic tool to characterize and model structure of D. andersoni p36 protein. Evaluation of p36 protein family as suitable vaccine antigens predicted a p36 homolog in Rhipicephalus appendiculatus, the tick vector of East Coast fever, with an antigenicity score of 0.7701 that compares well with that of Bm86 (0.7681), the protein antigen that constitute commercial tick vaccine Tickgard™. Ab initio modeling of the D. andersoni p36 protein yielded a 3D structure that predicted conserved antigenic region, which has potential of binding immunomodulating ligands including glycerol and lactose, found located within exposed loop, suggesting a likely role in immunosuppressive function of tick p36 proteins. Laboratory confirmation of these preliminary results is necessary in future studies.Entities:
Year: 2018 PMID: 29849611 PMCID: PMC5911333 DOI: 10.1155/2018/7963401
Source DB: PubMed Journal: Adv Bioinformatics ISSN: 1687-8027
Tick proteins related to D. andersoni p36 protein.
| Tick species | NCBI accession | Sequence similarity searches | Reference | |||||
|---|---|---|---|---|---|---|---|---|
| Blastp homology search | OrthoMCL Search | |||||||
| Protein description% identityAlignmentE ValueBit score | ||||||||
|
| AAF03683.1 | p36 | 100 | 220 | 1.00 | 459 | Reference | Bergman et al., 2000 |
|
| JAP82151.1 | Da-p36 family member | 37.72 | 228 | 2.00 | 124 | Co-ortholog | De castro et al., 2016 |
|
| JAP81510.1 | Da-p36 family member | 37.8 | 209 | 3.00 | 123 | Co-ortholog | De castro et al., 2016 |
|
| JAP87204.1 | Da-p36 family member | 37.81 | 201 | 3.00 | 120 | Co-ortholog | De castro et al., 2016 |
|
| JAP86350.1 | Da-p36 family member | 35.82 | 201 | 6.00 | 116 | Co-ortholog | De castro et al., 2016 |
|
| BAD11807.1 | Da-p36 | 35.04 | 234 | 1.00 | 111 | In-paralog | Roller et al., 2004 |
|
| ABB90890.1 | Rhh-ISP partial | 36.71 | 158 | 2.00 | 103 | In-paralog | Xiang et al., 2005 |
|
| JAU03129.1 | Hypothetical protein partial | 35.06 | 231 | 1.00 | 103 | In-paralog | Eliane et al., 2016 |
|
| JAP81944.1 | Da-p36 family member | 32.3 | 226 | 2.00 | 97.4 | In-paralog | De castro et al., 2016 |
|
| JAP88013.1 | Da-p36 family member partial | 31.58 | 228 | 2.00 | 97.4 | In-paralog | De castro et al., 2016 |
|
| JAU02613.1 | Hypothetical protein partial | 27.65 | 217 | 2.00 | 74.3 | In-paralog | Eliane et al., 2016 |
|
| JAP85022.1 | Hypothetical protein | 25.11 | 231 | 7.00 | 72.8 | In-paralog | De castro et al., 2016 |
|
| JAU02539.1 | partial Da-p36 family member | 32 | 175 | 2.00 | 70.9 | In-paralog | Eliane et al., 2016 |
|
| DAA34595.1 | Da-p36 like | 27.95 | 229 | 3.00 | 70.9 | In-paralog | Ribeiro et al., 2011 |
|
| JAT98922.1 | Hypothetical protein partial | 31.65 | 218 | 4.00 | 70.5 | In-paralog | Martins et al., 2016 |
|
| JAT98921.1 | Hypothetical protein | 30.19 | 212 | 3.00 | 65.5 | In-paralog | Martins et al., 2016 |
|
| JAP85729.1 | Da-p36 family member | 26.24 | 221 | 4.00 | 65.1 | In-paralog | De castro et al., 2016 |
|
| JAP85564.1 | Da-p36 family member | 25.47 | 212 | 2.00 | 63.5 | In-paralog | De castro et al., 2016 |
|
| JAP82143.1 | Da-p36 family member | 23.31 | 236 | 2.00 | 60.1 | In-paralog | De castro et al., 2016 |
|
| JAP86306.1 | Da-p36 family member | 25.74 | 237 | 3.00 | 60.1 | In-paralog | De castro et al., 2016 |
|
| JAP81863.1 | Da-p36 family member | 27.14 | 210 | 6.00 | 59.3 | In-paralog | De castro et al., 2016 |
|
| DAA34748.1 | Da-p36 like | 29.24 | 171 | 1.00 | 57.8 | In-paralog | Ribeiro et al., 2011 |
|
| JAP78061.1 | Da-p36 family member | 26.23 | 244 | 3.00 | 54.3 | In-paralog | De castro et al., 2016 |
|
| JAP86680.1 | Da-p36 family member | 27.72 | 202 | 7.00 | 53.5 | In-paralog | De castro et al., 2016 |
|
| JAP88255.1 | Da-p36 family member | 26.73 | 202 | 2.00 | 52 | In-paralog | De castro et al., 2016 |
|
| JAP85730.1 | Da-p36 family member | 24.82 | 141 | 2.00 | 51.2 | In-paralog | De castro et al., 2016 |
|
| BAG11660.1 | Isp-p36 | 31.78 | 107 | 1.00 | 50.1 | In-paralog | Nakajima et al., 2008 |
|
| JAP81735.1 | Da-p36 family member | 24.58 | 240 | 6.00 | 38.9 | In-paralog | De castro et al., 2016 |
|
| JAP86324.1 | Da-p36 family member | 24.24 | 198 | 0.001 | 38.1 | In-paralog | De castro et al., 2016 |
|
| JAU02519.1 | Hypothetical protein partial | 33.7 | 92 | 0.001 | 36.6 | In-paralog | Eliane et al., 2016 |
|
| DAA34145.1 | ISP-p36 partial | 28.95 | 76 | 0.002 | 36.6 | In-paralog | Ribeiro et al., 2011 |
|
| JAP81446.1 | Da-p36 family member | 25.74 | 237 | 0.011 | 35 | In-paralog | De castro et al., 2016 |
|
| JAP86032.1 | Da-p36 family member | 25.18 | 139 | 0.019 | 34.3 | In-paralog | De castro et al., 2016 |
aaAmino acid; reference p36 protein in D. andersoni.
Figure 1(a) Occurrence of tandem motifs among p36 proteins. Motif 2 is conserved across all homologs; (b) motifs sequence logo analysis.
Figure 2Multiple alignment of p36 homologous amino acid sequences showing likely conservation region. In the case of reference D. andersoni p36 protein, the conserved region “IDKGMLSPF” is located at positions “107–115.” (:) and (.): marks conservation between groups of strongly or weakly similar properties, respectively. Note. Amino acids colour according to physicochemical properties: red is for small hydrophobic, blue for acidic, magenta for basic, and green for hydroxyl/sulfhydryl/amine amino acid residues. Highlighted region shows conservation in tick p36 proteins.
Figure 3Phylogenetic relatedness between p36 proteins. Bootstrap resampling (1000 replicates) was employed to validate the robustness of the groupings yielded.
Conserved motif 2 of tick p36 proteins mapped as a potential antigenic/binding site region.
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|
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|---|---|---|---|---|---|---|---|
|
| AAF03683.1 | 0.5880 | 107–127 | 95–128 | I | I | Lactose, Glycerol, NAG-(4-1)GAL, Sucrose |
|
| |||||||
|
| JAP81944.1 | 0.7701 | 117–137 | 108–137 | I |
| - |
|
| |||||||
|
| JAP88013.1 | 0.7379 | 113–133 | 104–133 | I |
| - |
|
| |||||||
|
| JAP81510.1 | 0.7258 | 102–122 | 94–133 | IDDSMYSPFNIMTTVAFPLI |
| B-Octylglucoside |
|
| |||||||
|
| JAP86350.1 | 0.7072 | 78–98 | 74–110 | IDY | I | Alpha-D-Mannose, Alpha-D-Lactose, B-Octylglucoside |
Bold sections: tick p36 conserved region residues mapped as potentially antigenic/binding sites.
Validation of 3D structures for models 2 and 9 of D. andersoni p36 protein.
| Number | Validation tool | Parameter monitored | Limit | Results | |
|---|---|---|---|---|---|
| Model 2 | Model 9 | ||||
| (1) |
| LGscore | LG score > 1.5 fairly good model | LGscore 2.797 | LGscore 2.366 |
| MaxSub | MaxSub > 0.1 fairly good model | MaxSub 0.208 | MaxSub 0.055 | ||
|
| |||||
| (2) |
| LGscore | LG score > 1.5 fairly good model | LGscore 2.914 | LGscore 2.231 |
| MaxSub | MaxSub > 0.1 fairly good model | MaxSub 0.219 | MaxSub 0.046 | ||
|
| |||||
| (3) |
| Favoured region residues | 156 (79.2%) | 152 (77.2%) | |
Figure 4(a, b) D. andersoni p36 protein predicted 3D structure ribbon and space field model; (c) predicted antigenic region “74–107,” in 3D structure of D. andersoni p36 protein. (d) Topology of D. andersoni p36 protein showing the likely predicted conserved exposed loop. Yellow: predicted conserved antigenic region “74–107”; red: α-helix secondary structure; purple: β-strands secondary structure. ↑: predicted exposed loop region “87–94” (“DKGMLSPF”) in D. andersoni p36, showing conservation in alignment of tick p36 proteins.