| Literature DB >> 29849002 |
J Román1, A Castillo2, A Mahn3.
Abstract
Glucosinolates are secondary metabolites occurring in Brassicaceae plants whose hydrolysis may yield isothiocyanates, widely recognized as health-promoting compounds. Myrosinase catalyzes this conversion. The chemical mechanism involves an unstable intermediary (thiohydroxamate-O-sulfonate) that spontaneously decomposes into isothiocyanates or other non-bioactive compounds depending on pH and cofactors. At acidic pH, non-bioactive compounds such as nitriles and thiocyanates are formed, while at neutral pH isothiocyanates are obtained. Broccoli myrosinase has been poorly studied so far. Recently, its amino acidic sequence was elucidated, and a structural model was built. The aim of this work was to study the molecular interaction of broccoli myrosinase with different ligands at acidic pH to propose possible inhibitors that prevent formation of undesirable compounds at acidic pH, and that at neutral pH dissociate from the enzyme, allowing formation of isothiocyanates. The interaction between broccoli myrosinase and 40 ligands was studied by molecular docking simulations. Both the enzyme and each inhibitor were set at pH 3.0. Amygdaline and arbutin showed the highest affinity to broccoli myrosinase in this condition. The residues that stabilize the complexes agree with those that stabilize the substrate (Gln207, Glu429, Tyr352, and Ser433). Accordingly, amygdaline and arbutin would perform as competitive inhibitors of myrosinase at pH 3.0.Entities:
Keywords: amygdalin; arbutin; glucosinolates; sulforaphane; thioglucosidase inhibitors
Mesh:
Substances:
Year: 2018 PMID: 29849002 PMCID: PMC6100158 DOI: 10.3390/molecules23061313
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1(a) General structure of glucosinolates, where R1 denotes the amino acidic-derived side chain; and (b) classification of glucosinolates according to the side chain (R1), and some examples of glucosinolates found in Brassicaceae vegetables (adapted from Holst et al. [5]).
Figure 2Mechanism of hydrolysis of glucosinolates by myrosinase. ESP, epithiospecifier protein (adapted from Latté et al. [2]).
Figure 3Effect of pH on specific activity of broccoli myrosinase. The bars correspond to the average of three independent experiments and the sticks indicate the standard deviation.
Docking scores and glide scores obtained for 40 thioglucosidase inhibitors and two substrates. In parentheses appear the values given by Autodock Vina. The energy values obtained at pH 7 are given in italics.
| N° | Inhibitor | PubChem CID * | Glide Score (kcal/mol) | Docking Score |
|---|---|---|---|---|
|
| (2-sulfate) ethyl 1-thio-beta- | 23666133 | −6.152 | −6.152 |
|
| (2 | 124702 | −5.167 | −5.167 |
|
| (3-sulfonate) propyl 1-thio-beta- | 23674091 | −6.392 | −6.392 |
|
| 1,10-phenanthroline | 1318 | −5.788 | −5.782 |
|
| 1,4-dideoxy-1,4-imino- | 451991 | −5.508 | −5.508 |
|
| 1-deoxynojirimycin | 29435 | −4.671 | −4.671 |
|
| 1- | 64947 | −5.372 | −5.372 |
|
| 2-methoxy-5-nitrotropone | 84563 | −5.774 | −5.148 |
|
| 5,5′-dithiobis (2-nitrobenzoic acid) | 6254 | −6.076 | −5.984 |
|
| Alexine | 189,377 | −4.778 | −4.778 |
|
| Amygdalin | 656,516 | −6.964 (−6.900) | −6.918 |
|
| Arbutin | 440,936 | −7.842 (−6.900) | −7.474 |
|
| 54,670,067 | −5.626 | −4.682 | |
|
| Castanospermine | 54,445 | −6.426 | −6.426 |
|
| Cysteamine | 6058 | −2.981 | −2.981 |
|
| Delta-gluconolactone | 7027 | −5.566 | −5.566 |
|
| Diisopropyl fluorophosphate | 5936 | −4.601 | −4.601 |
|
| Dithiothreitol | 446,094 | −3.613 | −3.613 |
|
| Ethylenediaminetetraacetic acid | 6049 | −2.266 | −2.170 |
|
| Fluorodinitrobenzene | 6264 | −5.331 | −5.331 |
|
| Fructose | 5984 | −4.356 | −4.356 |
|
| Galactose | 6036 | −5.671 | −5.671 |
|
| Glucose | 64,689 | −6.156 | −6.156 |
|
| 5862 | −4.176 | −4.127 | |
|
| Maltose | 6255 | −5.396 | −5.396 |
|
| Mannose | 18,950 | −6.239 | −6.239 |
|
| Methyl jasmonate | 5,281,929 | −4.966 | −4.966 |
|
| Methyl-beta- | 445,238 | −5.787 | −5.787 |
|
| Monochlorotrifluoro- | 53,662,935 | −5.092 | −5.092 |
|
| 67,540 | −4.707 | −4.594 | |
|
| 92,930 | −5.842 | −5.842 | |
|
| Phenyl-beta- | 65,080 | −6.524 | −6.524 |
|
| Salicin | 439,503 | −5.950 | −5.950 |
|
| Sorbitol | 5780 | −4.013 | −4.013 |
|
| Sucrose | 5988 | −5.305 | −5.305 |
|
| Thiobenzoate | 80,024 | −5.088 | −5.088 |
|
| Thiomalate | 5,352,130 | −5.475 | −4.782 |
|
| Thiophenol | 7969 | −4.786 | −4.786 |
|
| Trinitrobenzenesulfonic acid | 11,045 | −5.470 | −5.470 |
|
| Xylose | 135,191 | −6.164 | −6.164 |
|
|
|
|
| |
|
| 23,682,211 | −5.508 | −5.508 | |
|
| 9,548,634 | −6.649 | −6.649 | |
* Compound identifier.
Figure 4Three-dimensional structure of the complexes between broccoli myrosinase and: (a) amygdaline; (b) arbutin; (c) glucoraphanin; and (d) sinigrin.
Figure 5Flowsheet representing the methodology used in the docking simulations.
Figure 6Thioglucosidase inhibitors in protonated state at pH 3. Numbers below each molecule are according to Table 1.