Literature DB >> 29848768

A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding.

Benoît Derrien1,2, Marion Clavel1, Nicolas Baumberger1, Taichiro Iki2, Alexis Sarazin2, Thibaut Hacquard1, María Rosa Ponce3, Véronique Ziegler-Graff1, Hervé Vaucheret4, José Luis Micol3, Olivier Voinnet2, Pascal Genschik5.   

Abstract

In Arabidopsis thaliana, ARGONAUTE1 (AGO1) plays a central role in microRNA (miRNA) and small interfering RNA (siRNA)-mediated silencing and is a key component in antiviral responses. The polerovirus F-box P0 protein triggers AGO1 degradation as a viral counterdefense. Here, we identified a motif in AGO1 that is required for its interaction with the S phase kinase-associated protein1-cullin 1-F-box protein (SCF) P0 (SCFP0) complex and subsequent degradation. The AGO1 P0 degron is conserved and confers P0-mediated degradation to other AGO proteins. Interestingly, the degron motif is localized in the DUF1785 domain of AGO1, in which a single point mutation (ago1-57, obtained by forward genetic screening) compromises recognition by SCFP0 Recapitulating formation of the RNA-induced silencing complex in a cell-free system revealed that this mutation impairs RNA unwinding, leading to stalled forms of AGO1 still bound to double-stranded RNAs. In vivo, the DUF1785 is required for unwinding perfectly matched siRNA duplexes, but is mostly dispensable for unwinding imperfectly matched miRNA duplexes. Consequently, its mutation nearly abolishes phased siRNA production and sense transgene posttranscriptional gene silencing. Overall, our work sheds new light on the mode of AGO1 recognition by P0 and the in vivo function of DUF1785 in RNA silencing.
© 2018 American Society of Plant Biologists. All rights reserved.

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Year:  2018        PMID: 29848768      PMCID: PMC6048793          DOI: 10.1105/tpc.18.00111

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  91 in total

Review 1.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

2.  In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90.

Authors:  Taichiro Iki; Manabu Yoshikawa; Masaki Nishikiori; Mauren C Jaudal; Eiko Matsumoto-Yokoyama; Ichiro Mitsuhara; Tetsuo Meshi; Masayuki Ishikawa
Journal:  Mol Cell       Date:  2010-06-03       Impact factor: 17.970

3.  Cleavage of the siRNA passenger strand during RISC assembly in human cells.

Authors:  Philipp J F Leuschner; Stefan L Ameres; Stephanie Kueng; Javier Martinez
Journal:  EMBO Rep       Date:  2006-01-20       Impact factor: 8.807

Review 4.  Fast-forward genetics enabled by new sequencing technologies.

Authors:  Korbinian Schneeberger; Detlef Weigel
Journal:  Trends Plant Sci       Date:  2011-03-24       Impact factor: 18.313

5.  ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data.

Authors:  Chong-Jian Chen; Nicolas Servant; Joern Toedling; Alexis Sarazin; Antonin Marchais; Evelyne Duvernois-Berthet; Valérie Cognat; Vincent Colot; Olivier Voinnet; Edith Heard; Constance Ciaudo; Emmanuel Barillot
Journal:  Bioinformatics       Date:  2012-10-07       Impact factor: 6.937

6.  Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1.

Authors:  Céline Sorin; John D Bussell; Isabelle Camus; Karin Ljung; Mariusz Kowalczyk; Gaia Geiss; Heather McKhann; Christophe Garcion; Hervé Vaucheret; Göran Sandberg; Catherine Bellini
Journal:  Plant Cell       Date:  2005-04-13       Impact factor: 11.277

7.  Tablet--next generation sequence assembly visualization.

Authors:  Iain Milne; Micha Bayer; Linda Cardle; Paul Shaw; Gordon Stephen; Frank Wright; David Marshall
Journal:  Bioinformatics       Date:  2009-12-04       Impact factor: 6.937

8.  The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Authors:  Andrew L Eamens; Neil A Smith; Shaun J Curtin; Ming-Bo Wang; Peter M Waterhouse
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

9.  The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing.

Authors:  Diane Bortolamiol; Maghsoud Pazhouhandeh; Katia Marrocco; Pascal Genschik; Véronique Ziegler-Graff
Journal:  Curr Biol       Date:  2007-09-18       Impact factor: 10.834

10.  Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot.

Authors:  Gurman Singh Pall; Carles Codony-Servat; Jane Byrne; Leigh Ritchie; Andrew Hamilton
Journal:  Nucleic Acids Res       Date:  2007-04-02       Impact factor: 16.971

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  12 in total

1.  Cell Cycle-Dependent Regulation and Function of ARGONAUTE1 in Plants.

Authors:  Adrien Trolet; Patricia Baldrich; Marie-Claire Criqui; Marieke Dubois; Marion Clavel; Blake C Meyers; Pascal Genschik
Journal:  Plant Cell       Date:  2019-06-12       Impact factor: 11.277

2.  Editor Profile: Pascal Genschik.

Authors:  Robert C Augustine
Journal:  Plant Cell       Date:  2020-06-18       Impact factor: 11.277

3.  Movement and differential consumption of short interfering RNA duplexes underlie mobile RNA interference.

Authors:  Emanuel A Devers; Christopher A Brosnan; Alexis Sarazin; Daniele Albertini; Andrea C Amsler; Florian Brioudes; Pauline E Jullien; Peiqi Lim; Gregory Schott; Olivier Voinnet
Journal:  Nat Plants       Date:  2020-07-06       Impact factor: 15.793

4.  Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP Libraries.

Authors:  Érika Frydrych Capelari; Guilherme Cordenonsi da Fonseca; Frank Guzman; Rogerio Margis
Journal:  Plants (Basel)       Date:  2019-08-26

5.  Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover.

Authors:  Axel J Giudicatti; Ariel H Tomassi; Pablo A Manavella; Agustin L Arce
Journal:  Plants (Basel)       Date:  2021-01-30

6.  smartPARE: An R Package for Efficient Identification of True mRNA Cleavage Sites.

Authors:  Kristian Persson Hodén; Xinyi Hu; German Martinez; Christina Dixelius
Journal:  Int J Mol Sci       Date:  2021-04-20       Impact factor: 5.923

7.  Atypical molecular features of RNA silencing against the phloem-restricted polerovirus TuYV.

Authors:  Marion Clavel; Esther Lechner; Marco Incarbone; Timothée Vincent; Valerie Cognat; Ekaterina Smirnova; Maxime Lecorbeiller; Véronique Brault; Véronique Ziegler-Graff; Pascal Genschik
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 8.  RNAi-Based Antiviral Innate Immunity in Plants.

Authors:  Liying Jin; Mengna Chen; Meiqin Xiang; Zhongxin Guo
Journal:  Viruses       Date:  2022-02-20       Impact factor: 5.048

9.  HYL1-CLEAVAGE SUBTILASE 1 (HCS1) suppresses miRNA biogenesis in response to light-to-dark transition.

Authors:  Hyun Ju Jung; Suk Won Choi; Kyung-Hwan Boo; Jee-Eun Kim; Young Kyoung Oh; Min Kyun Han; Moon Young Ryu; Chang Woo Lee; Christian Møller; Pratik Shah; Gu Min Kim; Woorim Yang; Seok Keun Cho; Seong Wook Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-08       Impact factor: 12.779

10.  The viral F-box protein P0 induces an ER-derived autophagy degradation pathway for the clearance of membrane-bound AGO1.

Authors:  Simon Michaeli; Marion Clavel; Esther Lechner; Corrado Viotti; Jian Wu; Marieke Dubois; Thibaut Hacquard; Benoît Derrien; Esther Izquierdo; Maxime Lecorbeiller; Nathalie Bouteiller; Julia De Cilia; Véronique Ziegler-Graff; Hervé Vaucheret; Gad Galili; Pascal Genschik
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-18       Impact factor: 11.205

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