Literature DB >> 29848268

Computational Drug Repurposing: Current Trends.

Berin Karaman1, Wolfgang Sippl2.   

Abstract

Biomedical discovery has been reshaped upon the exploding digitization of data which can be retrieved from a number of sources, ranging from clinical pharmacology to cheminformatics-driven databases. Now, supercomputing platforms and publicly available resources such as biological, physicochemical, and clinical data, can all be integrated to construct a detailed map of signaling pathways and drug mechanisms of action in relation to drug candidates. Recent advancements in computer-aided data mining have facilitated analyses of 'big data' approaches and the discovery of new indications for pre-existing drugs has been accelerated. Linking gene-phenotype associations to predict novel drug-disease signatures or incorporating molecular structure information of drugs and protein targets with other kinds of data derived from systems biology provide great potential to accelerate drug discovery and improve the success of drug repurposing attempts. In this review, we highlight commonly used computational drug repurposing strategies, including bioinformatics and cheminformatics tools, to integrate large-scale data emerging from the systems biology, and consider both the challenges and opportunities of using this approach. Moreover, we provide successful examples and case studies that combined various in silico drug-repurposing strategies to predict potential novel uses for known therapeutics. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.

Keywords:  Drug repurposing; bioinformatics; cheminformatics; network pharmacology; screening; systems biology.

Mesh:

Year:  2019        PMID: 29848268     DOI: 10.2174/0929867325666180530100332

Source DB:  PubMed          Journal:  Curr Med Chem        ISSN: 0929-8673            Impact factor:   4.530


  19 in total

1.  A ligand-based computational drug repurposing pipeline using KNIME and Programmatic Data Access: case studies for rare diseases and COVID-19.

Authors:  Alzbeta Tuerkova; Barbara Zdrazil
Journal:  J Cheminform       Date:  2020-11-25       Impact factor: 5.514

2.  Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.

Authors:  Richard D Smith; Jordan J Clark; Aqeel Ahmed; Zachary J Orban; James B Dunbar; Heather A Carlson
Journal:  J Mol Biol       Date:  2019-05-22       Impact factor: 5.469

3.  A ligand-based computational drug repurposing pipeline using KNIME and Programmatic Data Access: case studies for rare diseases and COVID-19.

Authors:  Alzbeta Tuerkova; Barbara Zdrazil
Journal:  J Cheminform       Date:  2020-11-25       Impact factor: 5.514

Review 4.  Drug targets for COVID-19 therapeutics: Ongoing global efforts.

Authors:  Ambrish Saxena
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

5.  Biophysical Insight into the Interaction of Human Lysozyme with Anticancer Drug Anastrozole: A Multitechnique Approach.

Authors:  Fahad M Almutairi; Mohammad Rehan Ajmal; Adel Ibrahim Al Alawy; Rizwan Hasan Khan; Ali Saber Abdelhameed
Journal:  ScientificWorldJournal       Date:  2020-08-25

6.  Development of Orthogonal Linear Separation Analysis (OLSA) to Decompose Drug Effects into Basic Components.

Authors:  Tadahaya Mizuno; Setsuo Kinoshita; Takuya Ito; Shotaro Maedera; Hiroyuki Kusuhara
Journal:  Sci Rep       Date:  2019-02-12       Impact factor: 4.379

7.  Repositioning Dequalinium as Potent Muscarinic Allosteric Ligand by Combining Virtual Screening Campaigns and Experimental Binding Assays.

Authors:  Angelica Mazzolari; Silvia Gervasoni; Alessandro Pedretti; Laura Fumagalli; Rosanna Matucci; Giulio Vistoli
Journal:  Int J Mol Sci       Date:  2020-08-19       Impact factor: 5.923

8.  In-silico drug repurposing and molecular dynamics puzzled out potential SARS-CoV-2 main protease inhibitors.

Authors:  Mahmoud A A Ibrahim; Alaa H M Abdelrahman; Mohamed-Elamir F Hegazy
Journal:  J Biomol Struct Dyn       Date:  2020-07-20

Review 9.  Biophysical Techniques for Target Validation and Drug Discovery in Transcription-Targeted Therapy.

Authors:  Mehdi Moustaqil; Yann Gambin; Emma Sierecki
Journal:  Int J Mol Sci       Date:  2020-03-26       Impact factor: 5.923

10.  Computational insights into tetracyclines as inhibitors against SARS-CoV-2 Mpro via combinatorial molecular simulation calculations.

Authors:  Shiv Bharadwaj; Kyung Eun Lee; Vivek Dhar Dwivedi; Sang Gu Kang
Journal:  Life Sci       Date:  2020-07-09       Impact factor: 6.780

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