Literature DB >> 29846899

Cyanotoxin level prediction in a reservoir using gradient boosted regression trees: a case study.

Paulino José García Nieto1, Esperanza García-Gonzalo2, Fernando Sánchez Lasheras3, José Ramón Alonso Fernández4, Cristina Díaz Muñiz4, Francisco Javier de Cos Juez5.   

Abstract

Cyanotoxins are a type of cyanobacteria that is poisonous and poses a health threat in waters that could be used for drinking or recreational purposes. Thus, it is necessary to predict their presence to avoid risks. This paper presents a nonparametric machine learning approach using a gradient boosted regression tree model (GBRT) for prediction of cyanotoxin contents from cyanobacterial concentrations determined experimentally in a reservoir located in the north of Spain. GBRT models seek and obtain good predictions in highly nonlinear problems, like the one treated here, where the studied variable presents low concentrations of cyanotoxins mixed with high concentration peaks. Two types of results have been obtained: firstly, the model allows the ranking or the dependent variables according to its importance in the model. Finally, the high performance and the simplicity of the model make the gradient boosted tree method attractive compared to conventional forecasting techniques.

Entities:  

Keywords:  Cyanobacteria; Cyanotoxins; Gradient boosting; Harmful algal blooms (HABs); Regression trees; Statistical machine learning techniques

Mesh:

Substances:

Year:  2018        PMID: 29846899     DOI: 10.1007/s11356-018-2219-4

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  10 in total

1.  First observation of cylindrospermopsin in Anabaena lapponica isolated from the boreal environment (Finland).

Authors:  Lisa Spoof; Katri A Berg; Jarkko Rapala; Kirsti Lahti; Liisa Lepistö; James S Metcalf; Geoffrey A Codd; Jussi Meriluoto
Journal:  Environ Toxicol       Date:  2006-12       Impact factor: 4.119

2.  Culture-independent evidence for the persistent presence and genetic diversity of microcystin-producing Anabaena (Cyanobacteria) in the Gulf of Finland.

Authors:  David P Fewer; Miikka Köykkä; Katrianna Halinen; Jouni Jokela; Christina Lyra; Kaarina Sivonen
Journal:  Environ Microbiol       Date:  2008-12-08       Impact factor: 5.491

3.  Patterns of waste generation: A gradient boosting model for short-term waste prediction in New York City.

Authors:  Nicholas E Johnson; Olga Ianiuk; Daniel Cazap; Linglan Liu; Daniel Starobin; Gregory Dobler; Masoud Ghandehari
Journal:  Waste Manag       Date:  2017-02-16       Impact factor: 7.145

4.  The evolution of boosting algorithms. From machine learning to statistical modelling.

Authors:  A Mayr; H Binder; O Gefeller; M Schmid
Journal:  Methods Inf Med       Date:  2014-08-12       Impact factor: 2.176

Review 5.  Extending statistical boosting. An overview of recent methodological developments.

Authors:  A Mayr; H Binder; O Gefeller; M Schmid
Journal:  Methods Inf Med       Date:  2014-08-12       Impact factor: 2.176

6.  CyanoHAB occurrence and water irrigation cyanotoxin contamination: ecological impacts and potential health risks.

Authors:  Sana Saqrane; Brahim Oudra
Journal:  Toxins (Basel)       Date:  2009-11-25       Impact factor: 4.546

Review 7.  Recreational and occupational field exposure to freshwater cyanobacteria--a review of anecdotal and case reports, epidemiological studies and the challenges for epidemiologic assessment.

Authors:  Ian Stewart; Penelope M Webb; Philip J Schluter; Glen R Shaw
Journal:  Environ Health       Date:  2006-03-24       Impact factor: 5.984

8.  Modeling the Role of pH on Baltic Sea Cyanobacteria.

Authors:  Jana Hinners; Richard Hofmeister; Inga Hense
Journal:  Life (Basel)       Date:  2015-03-30

Review 9.  Impact of environmental factors on the regulation of cyanotoxin production.

Authors:  Thangavelu Boopathi; Jang-Seu Ki
Journal:  Toxins (Basel)       Date:  2014-06-25       Impact factor: 4.546

10.  Effect of high pH on growth of Synechocystis sp. PCC 6803 cultures and their contamination by golden algae (Poterioochromonas sp.).

Authors:  Eleftherios Touloupakis; Bernardo Cicchi; Ana Margarita Silva Benavides; Giuseppe Torzillo
Journal:  Appl Microbiol Biotechnol       Date:  2015-11-06       Impact factor: 4.813

  10 in total

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