Literature DB >> 29846693

Nomograms based on preoperative multiparametric magnetic resonance imaging for prediction of molecular subgrouping in medulloblastoma: results from a radiogenomics study of 111 patients.

Archya Dasgupta1, Tejpal Gupta1, Sona Pungavkar2, Neelam Shirsat3, Sridhar Epari4, Girish Chinnaswamy5, Abhishek Mahajan6, Amit Janu6, Aliasgar Moiyadi7, Sadhana Kannan8, Rahul Krishnatry1, Goda Jayant Sastri1, Rakesh Jalali1.   

Abstract

Background: Novel biological insights have led to consensus classification of medulloblastoma into 4 distinct molecular subgroups-wingless (WNT), sonic hedgehog (SHH), Group 3, and Group 4. We aimed to predict molecular subgrouping in medulloblastoma based on preoperative multiparametric magnetic resonance imaging (MRI) characteristics.
Methods: A set of 19 MRI features were evaluated in 111 patients with histologic diagnosis of medulloblastoma for prediction of molecular subgrouping. MRI characteristics were correlated with molecular subgroups derived from tissue samples in 111 patients (WNT = 17, SHH = 44, Group 3 = 27, and Group 4 = 23). Multinomial logistic regression of imaging parameters was performed on a training cohort (TC) of 76 patients, representing two-thirds of randomly selected patients from each of 4 molecular subgroups, to generate binary nomograms. Validation of these nomograms was performed on the remaining 35 patients as the validation cohort (VC).
Results: Medulloblastoma subgroups could be accurately predicted by preoperative MRI features in 74% of cases. Predictive accuracy was excellent for SHH (95%), acceptably high for Group 4 (78%), modest for Group 3 (56%) and worst for WNT (41%) subgroup medulloblastoma. SHH-specific nomogram was associated with excellent correlation between TC and VC, with area under the curve (AUC) of 0.939 and 0.991, respectively. AUC for Group 4 was acceptable at 0.851 and 0.788 in TC and VC, respectively; however, these values were consistently suboptimal in WNT and Group 3 medulloblastoma.
Conclusion: The predictive accuracy of MRI-based nomograms was excellent for SHH and encouraging for Group 4 medulloblastoma. Further work is needed for Group 3 and WNT-pathway medulloblastoma.

Entities:  

Year:  2019        PMID: 29846693      PMCID: PMC6303469          DOI: 10.1093/neuonc/noy093

Source DB:  PubMed          Journal:  Neuro Oncol        ISSN: 1522-8517            Impact factor:   12.300


  25 in total

1.  Real-time PCR assay based on the differential expression of microRNAs and protein-coding genes for molecular classification of formalin-fixed paraffin embedded medulloblastomas.

Authors:  Ratika Kunder; Rakesh Jalali; Epari Sridhar; Aliasgar Moiyadi; Naina Goel; Atul Goel; Tejpal Gupta; Rahul Krishnatry; Sadhana Kannan; Purna Kurkure; Chandrashekhar Deopujari; Prakash Shetty; Naresh Biyani; Andrey Korshunov; Stefan M Pfister; Paul A Northcott; Neelam Vishwanath Shirsat
Journal:  Neuro Oncol       Date:  2013-11-07       Impact factor: 12.300

2.  Medulloblastoma Genotype Dictates Blood Brain Barrier Phenotype.

Authors:  Timothy N Phoenix; Deanna M Patmore; Scott Boop; Nidal Boulos; Megan O Jacus; Yogesh T Patel; Martine F Roussel; David Finkelstein; Liliana Goumnerova; Sebastien Perreault; Elizabeth Wadhwa; Yoon-Jae Cho; Clinton F Stewart; Richard J Gilbertson
Journal:  Cancer Cell       Date:  2016-03-31       Impact factor: 31.743

3.  Behind the numbers: Decoding molecular phenotypes with radiogenomics--guiding principles and technical considerations.

Authors:  Michael D Kuo; Neema Jamshidi
Journal:  Radiology       Date:  2014-02       Impact factor: 11.105

4.  Distinctive microRNA signature of medulloblastomas associated with the WNT signaling pathway.

Authors:  Amit Gokhale; Ratika Kunder; Atul Goel; Rajiv Sarin; Aliasgar Moiyadi; Asha Shenoy; Chandrasekhar Mamidipally; Santosh Noronha; Sadhana Kannan; Neelam Vishwanath Shirsat
Journal:  J Cancer Res Ther       Date:  2010 Oct-Dec       Impact factor: 1.805

5.  Medulloblastoma comprises four distinct molecular variants.

Authors:  Paul A Northcott; Andrey Korshunov; Hendrik Witt; Thomas Hielscher; Charles G Eberhart; Stephen Mack; Eric Bouffet; Steven C Clifford; Cynthia E Hawkins; Pim French; James T Rutka; Stefan Pfister; Michael D Taylor
Journal:  J Clin Oncol       Date:  2010-09-07       Impact factor: 44.544

6.  Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition.

Authors:  Marcel Kool; David T W Jones; Natalie Jäger; Paul A Northcott; Trevor J Pugh; Volker Hovestadt; Rosario M Piro; L Adriana Esparza; Shirley L Markant; Marc Remke; Till Milde; Franck Bourdeaut; Marina Ryzhova; Dominik Sturm; Elke Pfaff; Sebastian Stark; Sonja Hutter; Huriye Seker-Cin; Pascal Johann; Sebastian Bender; Christin Schmidt; Tobias Rausch; David Shih; Jüri Reimand; Laura Sieber; Andrea Wittmann; Linda Linke; Hendrik Witt; Ursula D Weber; Marc Zapatka; Rainer König; Rameen Beroukhim; Guillaume Bergthold; Peter van Sluis; Richard Volckmann; Jan Koster; Rogier Versteeg; Sabine Schmidt; Stephan Wolf; Chris Lawerenz; Cynthia C Bartholomae; Christof von Kalle; Andreas Unterberg; Christel Herold-Mende; Silvia Hofer; Andreas E Kulozik; Andreas von Deimling; Wolfram Scheurlen; Jörg Felsberg; Guido Reifenberger; Martin Hasselblatt; John R Crawford; Gerald A Grant; Nada Jabado; Arie Perry; Cynthia Cowdrey; Sydney Croul; Gelareh Zadeh; Jan O Korbel; Francois Doz; Olivier Delattre; Gary D Bader; Martin G McCabe; V Peter Collins; Mark W Kieran; Yoon-Jae Cho; Scott L Pomeroy; Olaf Witt; Benedikt Brors; Michael D Taylor; Ulrich Schüller; Andrey Korshunov; Roland Eils; Robert J Wechsler-Reya; Peter Lichter; Stefan M Pfister
Journal:  Cancer Cell       Date:  2014-03-17       Impact factor: 31.743

7.  Molecular subgroups of medulloblastoma identification using noninvasive magnetic resonance spectroscopy.

Authors:  Stefan Blüml; Ashley S Margol; Richard Sposto; Rebekah J Kennedy; Nathan J Robison; Marzieh Vali; Long T Hung; Sakunthala Muthugounder; Jonathan L Finlay; Anat Erdreich-Epstein; Floyd H Gilles; Alexander R Judkins; Mark D Krieger; Girish Dhall; Marvin D Nelson; Shahab Asgharzadeh
Journal:  Neuro Oncol       Date:  2015-08-08       Impact factor: 12.300

Review 8.  Risk stratification of childhood medulloblastoma in the molecular era: the current consensus.

Authors:  Vijay Ramaswamy; Marc Remke; Eric Bouffet; Simon Bailey; Steven C Clifford; Francois Doz; Marcel Kool; Christelle Dufour; Gilles Vassal; Till Milde; Olaf Witt; Katja von Hoff; Torsten Pietsch; Paul A Northcott; Amar Gajjar; Giles W Robinson; Laetitia Padovani; Nicolas André; Maura Massimino; Barry Pizer; Roger Packer; Stefan Rutkowski; Stefan M Pfister; Michael D Taylor; Scott L Pomeroy
Journal:  Acta Neuropathol       Date:  2016-04-04       Impact factor: 17.088

9.  Global incidence of malignant brain and other central nervous system tumors by histology, 2003-2007.

Authors:  Rebecca Leece; Jordan Xu; Quinn T Ostrom; Yanwen Chen; Carol Kruchko; Jill S Barnholtz-Sloan
Journal:  Neuro Oncol       Date:  2017-10-19       Impact factor: 12.300

10.  Molecular subgroups of medulloblastoma: the current consensus.

Authors:  Michael D Taylor; Paul A Northcott; Andrey Korshunov; Marc Remke; Yoon-Jae Cho; Steven C Clifford; Charles G Eberhart; D Williams Parsons; Stefan Rutkowski; Amar Gajjar; David W Ellison; Peter Lichter; Richard J Gilbertson; Scott L Pomeroy; Marcel Kool; Stefan M Pfister
Journal:  Acta Neuropathol       Date:  2011-12-02       Impact factor: 17.088

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  15 in total

1.  Radiogenomics in Medulloblastoma: Can the Human Brain Compete with Artificial Intelligence and Machine Learning?

Authors:  A Dasgupta; T Gupta
Journal:  AJNR Am J Neuroradiol       Date:  2019-04-11       Impact factor: 3.825

2.  Imaging Characteristics of Wingless Pathway Subgroup Medulloblastomas: Results from the German HIT/SIOP-Trial Cohort.

Authors:  A Stock; M Mynarek; T Pietsch; S M Pfister; S C Clifford; T Goschzik; D Sturm; E C Schwalbe; D Hicks; S Rutkowski; B Bison; M Pham; M Warmuth-Metz
Journal:  AJNR Am J Neuroradiol       Date:  2019-10-24       Impact factor: 3.825

3.  Renal cell carcinoma: predicting RUNX3 methylation level and its consequences on survival with CT features.

Authors:  Dongzhi Cen; Li Xu; Siwei Zhang; Zhiguang Chen; Yan Huang; Ziqi Li; Bo Liang
Journal:  Eur Radiol       Date:  2019-03-15       Impact factor: 5.315

4.  Multidisciplinary Management of Medulloblastoma: Consensus, Challenges, and Controversies.

Authors:  Abhishek Chatterjee; Madan Maitre; Archya Dasgupta; Epari Sridhar; Tejpal Gupta
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Magnetic Resonance Imaging in the Contemporary Management of Medulloblastoma: Current and Emerging Applications.

Authors:  Archya Dasgupta; Madan Maitre; Sona Pungavkar; Tejpal Gupta
Journal:  Methods Mol Biol       Date:  2022

Review 6.  Radiomics and radiogenomics in pediatric neuro-oncology: A review.

Authors:  Rachel Madhogarhia; Debanjan Haldar; Sina Bagheri; Ariana Familiar; Hannah Anderson; Sherjeel Arif; Arastoo Vossough; Phillip Storm; Adam Resnick; Christos Davatzikos; Anahita Fathi Kazerooni; Ali Nabavizadeh
Journal:  Neurooncol Adv       Date:  2022-05-27

7.  Molecular subgrouping of medulloblastoma based on few-shot learning of multitasking using conventional MR images: a retrospective multicenter study.

Authors:  Xi Chen; Zhen Fan; Kay Ka-Wai Li; Guoqing Wu; Zhong Yang; Xin Gao; Yingchao Liu; Haibo Wu; Hong Chen; Qisheng Tang; Liang Chen; Yuanyuan Wang; Ying Mao; Ho-Keung Ng; Zhifeng Shi; Jinhua Yu; Liangfu Zhou
Journal:  Neurooncol Adv       Date:  2020-06-22

8.  Prognostic impact of semantic MRI features on survival outcomes in molecularly subtyped medulloblastoma.

Authors:  Archya Dasgupta; Tejpal Gupta; Madan Maitre; Babusha Kalra; Abhishek Chatterjee; Rahul Krishnatry; Jayant Sastri Goda; Neelam Shirsat; Sridhar Epari; Ayushi Sahay; Amit Janu; Sona Pungavkar; Girish Chinnaswamy; Vijay Patil; Aliasgar Moiyadi; Prakash Shetty; Rakesh Jalali
Journal:  Strahlenther Onkol       Date:  2022-01-21       Impact factor: 3.621

9.  The clinical treatment and outcome of cerebellopontine angle medulloblastoma: a retrospective study of 15 cases.

Authors:  Tao Wu; Pei-Ran Qu; Shun Zhang; Shi-Wei Li; Jing Zhang; Bo Wang; Pinan Liu; Chun-de Li; Fu Zhao
Journal:  Sci Rep       Date:  2020-06-17       Impact factor: 4.379

10.  Arterial spin labelling and diffusion-weighted imaging in paediatric brain tumours.

Authors:  Patrick W Hales; Felice d'Arco; Jessica Cooper; Josef Pfeuffer; Darren Hargrave; Kshitij Mankad; Chris Clark
Journal:  Neuroimage Clin       Date:  2019-01-29       Impact factor: 4.881

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