| Literature DB >> 29808834 |
Peng Wang1, Linbo Zhang1, Chunxia Huang1, Ping Huang1, Jianquan Zhang2.
Abstract
BACKGROUND Non-small cell lung cancer (NSCLC) is a leading cause of cancer-related death worldwide. The relationships of alcohol dehydrogenase (ADH) enzymes, encoded by the genes ADH1 (1A), ADH1B (ADH2), ADH1C (ADH3), ADH4, ADH5, ADH6, and ADH7, with NSCLC have not been studied. The aim of this study was to explore the associations between NSCLC prognosis and the expression patterns of ADH family members. MATERIAL AND METHODS The online resource Metabolic gEne RApid Visualizer was used to assess the expression patterns of ADH family members in normal and primary lung tumor tissues. The GeneMANIA plugin of Cytoscape software and STRING website were used to evaluate the relationships of the 7 ADH family members at the gene and protein levels. Gene ontology enrichment analysis and KEGG pathway analysis were performed using DAVID. The online website Kaplan-Meier Plotter was used to construct survival curves between NSCLC and ADH isoforms. RESULTS The prognosis of patients with high expression levels of the ADH1B, ADH1C, ADH4, and ADH5 genes was better than those with low expression in adenocarcinoma and all (containing adenocarcinoma and squamous cell cancer) histological types (all P<0.05). Low expression of ADH7 was associated with a better prognosis in patients with both the adenocarcinoma and squamous cell cancer histological types (P=9e-05). Moreover, expression of ADH family members was associated with smoking status, clinical stage, and chemotherapy status. CONCLUSIONS ADH1B, ADH1C, ADH4, ADH5, and ADH7 appear to be useful biomarkers for the prognosis of NSCLC patients.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29808834 PMCID: PMC6003262 DOI: 10.12659/MSM.910026
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Figure 1Expression levels of ADH family members in normal and primary lung tumor tissues. (A) Expression levels of ADH1A in normal and primary lung tumor tissues; (B) Expression levels of ADH1B in normal and primary lung tumor tissues; (C) Expression levels of ADH1C in normal and primary lung tumor tissues; (D) Expression levels of ADH4 in normal and primary lung tumor tissues; (E) Expression levels of ADH5 in normal and primary lung tumor tissues; (F) Expression levels of ADH6 in normal and primary lung tumor tissues; (G) Expression levels of ADH7 in normal and primary lung tumor tissues.
Figure 2Interaction analysis of ADH family members. (A) Pearson correlation of ADH family members in lung adenocarcinoma; (B) Pearson correlation of ADH family members in lung SCC; (C) Gene-gene interaction network among ADH family members; (D) Protein-protein interaction network among ADH family members.
Correlation analysis between ADH family members and smoking status.
| Isoenzymes | Smoking status | Cases | HR | 95% CI | |
|---|---|---|---|---|---|
| ADH1A/ADH1 | Yes | 820 | 1.19 | 0.97–1.47 | 0.095 |
| No | 205 | 1.24 | 0.71–2.16 | 0.449 | |
| ADH1B/ADH2 | Yes | 820 | 0.77 | 0.62–0.94 | |
| No | 205 | 0.33 | 0.18–0.61 | ||
| ADH1C/ADH3 | Yes | 820 | 0.72 | 0.58–0.88 | |
| No | 205 | 0.84 | 0.38–1.88 | 0.672 | |
| ADH4 | Yes | 300 | 0.57 | 0.37–0.87 | |
| No | 141 | 0.84 | 0.38–1.88 | 0.672 | |
| ADH5 | Yes | 820 | 0.83 | 0.67–1.02 | 0.075 |
| No | 205 | 0.36 | 0.2–0.66 | ||
| ADH6 | Yes | 820 | 1.26 | 1.03–1.55 | |
| No | 205 | 1.89 | 1.07–3.33 | ||
| ADH7 | Yes | 820 | 1.44 | 1.17–1.78 | |
| No | 205 | 1.72 | 0.98–3.04 | 0.057 |
ADH – alcohol dehydrogenase; ADH1A – alcohol dehydrogenase 1A; ADH1B – alcohol dehydrogenase 1B; ADH1C – alcohol dehydrogenase 1C; ADH2 – alcohol dehydrogenase 2; ADH3 – alcohol dehydrogenase 3; ADH4 – alcohol dehydrogenase 4; ADH5 – alcohol dehydrogenase 5; ADH6 – alcohol dehydrogenase 6; ADH7 – alcohol dehydrogenase 7.
Correlation analysis between ADH family members of clinical stage of NSCLC.
| Isoenzymes | Clinical stage | Cases | HR | 95% CI | |
|---|---|---|---|---|---|
| ADH1A/ADH1 | I | 577 | 0.82 | 0.62–1.08 | 0.163 |
| II | 244 | 1.46 | 1.01–2.11 | ||
| III | 70 | 0.61 | 0.36–1.06 | 0.077 | |
| ADH1B/ADH2 | I | 577 | 0.38 | 0.28–0.51 | |
| II | 244 | 0.93 | 0.64–1.34 | 0.691 | |
| III | 70 | 1.32 | 0.77–2.27 | 0.318 | |
| ADH1C/ADH3 | I | 577 | 0.45 | 0.34–0.59 | |
| II | 244 | 0.68 | 0.47–0.98 | ||
| III | 70 | 1.35 | 0.77–2.35 | 0.295 | |
| ADH4 | I | 449 | 0.29 | 0.2–0.42 | |
| II | 161 | 0.48 | 0.33–0.77 | ||
| III | 44 | 0.81 | 0.4–1.64 | 0.553 | |
| ADH5 | I | 577 | 0.52 | 0.39–0.68 | |
| II | 244 | 0.83 | 0.57–1.19 | 0.305 | |
| III | 70 | 0.72 | 0.41–1.24 | 0.230 | |
| ADH6 | I | 577 | 1.08 | 0.83–1.42 | 0.55 |
| II | 244 | 1.27 | 0.83–1.83 | 0.2009 | |
| III | 70 | 0.82 | 0.48–1.41 | 0.476 | |
| ADH7 | I | 577 | 1.5 | 1.14–1.96 | |
| II | 244 | 1.14 | 0.79–1.64 | 0.489 | |
| III | 70 | 1.37 | 0.79–2.35 | 0.257 |
ADH – alcohol dehydrogenase; ADH1A – alcohol dehydrogenase 1A; ADH1B – alcohol dehydrogenase 1B; ADH1C – alcohol dehydrogenase 1C; ADH2 – alcohol dehydrogenase 2; ADH3 – alcohol dehydrogenase 3; ADH4 – alcohol dehydrogenase 4; ADH5 – alcohol dehydrogenase 5; ADH6 – alcohol dehydrogenase 6; ADH7 – alcohol dehydrogenase 7; NSCLC – non-small cell lung cancer; HR – hazard ratio; 95%CI – 95% confidence interval.
Correlation analysis between ADH family members and chemotherapy outcomes of NSCLC.
| Isoenzymes | Smoking status | Cases | HR | 95% CI | |
|---|---|---|---|---|---|
| ADH1A/ADH1 | Yes | 176 | 1.09 | 0.72–1.64 | 0.682 |
| No | 310 | 0.93 | 0.67–1.31 | 0.685 | |
| ADH1B/ADH2 | Yes | 176 | 1.23 | 0.82–1.85 | 0.31 |
| No | 310 | 0.72 | 0.52–1.01 | 0.056 | |
| ADH1C/ADH3 | Yes | 176 | 1.04 | 0.69–1.55 | 0.861 |
| No | 310 | 0.63 | 0.45–0.88 | ||
| ADH4 | Yes | 34 | 0.42 | 0.12–1.39 | 0.140 |
| No | 21 | 1.66 | 0.3–9.19 | 0.555 | |
| ADH5 | Yes | 176 | 1.11 | 0.73–1.66 | 0.632 |
| No | 310 | 0.94 | 0.67–1.31 | 0.708 | |
| ADH6 | Yes | 176 | 0.55 | 0.36–0.82 | |
| No | 310 | 0.99 | 0.71–1.39 | 0.972 | |
| ADH7 | Yes | 176 | 1.26 | 0.84–1.90 | 0.271 |
| No | 310 | 1.18 | 0.84–1.65 | 0.342 |
ADH – alcohol dehydrogenase; ADH1A – alcohol dehydrogenase 1A; ADH1B – alcohol dehydrogenase 1B; ADH1C – alcohol dehydrogenase 1C; ADH2 – alcohol dehydrogenase 2; ADH3 – alcohol dehydrogenase 3; ADH4 – alcohol dehydrogenase 4; ADH5 – alcohol dehydrogenase 5; ADH6 – alcohol dehydrogenase 6; ADH7 – alcohol dehydrogenase 7; NSCLC – non-small cell lung cancer; HR – hazard ratio; 95%CI – 95% confidence interval.
Enrichment analysis of gene ontology of ADH family members.
| Category | Term | Count | % | FDR | |
|---|---|---|---|---|---|
| GOTERM_BP_FAT | GO: 0006067~ethanol metabolic process | 5 | 100 | 3.58E-15 | 3.34E-12 |
| GOTERM_BP_FAT | GO: 0034308~monohydric alcohol metabolic process | 5 | 100 | 3.58E-15 | 3.34E-12 |
| GOTERM_BP_FAT | GO: 0006069~ethanol oxidation | 5 | 100 | 3.58E-15 | 3.34E-12 |
| GOTERM_MF_FAT | GO: 0004022~alcohol dehydrogenase (NAD) activity | 5 | 100 | 2.96E-14 | 2.73E-11 |
| GOTERM_MF_FAT | GO: 0004024~alcohol dehydrogenase activity, zinc-dependent | 4 | 80 | 4.39E-11 | 4.06E-08 |
| GOTERM_BP_FAT | GO: 0055114~oxidation reduction | 5 | 100 | 4.93E-06 | 0.00463976 |
| GOTERM_BP_FAT | GO: 0001523~retinoid metabolic process | 3 | 60 | 1.66E-05 | 0.01556916 |
| GOTERM_BP_FAT | GO: 0016101~diterpenoid metabolic process | 3 | 60 | 1.66E-05 | 0.01556916 |
| GOTERM_BP_FAT | GO: 0006721~terpenoid metabolic process | 3 | 60 | 1.96E-05 | 0.01845758 |
| GOTERM_BP_FAT | GO: 0006720~isoprenoid metabolic process | 3 | 60 | 6.18E-05 | 0.05808355 |
| GOTERM_BP_FAT | GO: 0019748~secondary metabolic process | 3 | 60 | 2.01E-04 | 0.18840753 |
| GOTERM_MF_FAT | GO: 0035276~ethanol binding | 2 | 40 | 6.16E-04 | 0.56876933 |
| GOTERM_MF_FAT | GO: 0008270~zinc ion binding | 5 | 100 | 0.001002 | 0.92332089 |
| GOTERM_MF_FAT | GO: 0046914~transition metal ion binding | 5 | 100 | 0.002114 | 1.93934293 |
| GOTERM_MF_FAT | GO: 0004745~retinol dehydrogenase activity | 2 | 40 | 0.003078 | 2.81253478 |
| GOTERM_MF_FAT | GO: 0019841~retinol binding | 2 | 40 | 0.003692 | 3.36573224 |
| GOTERM_MF_FAT | GO: 0005501~retinoid binding | 2 | 40 | 0.006455 | 5.8174382 |
| GOTERM_MF_FAT | GO: 0008289~lipid binding | 3 | 60 | 0.006866 | 6.17736413 |
| GOTERM_MF_FAT | GO: 0019840~isoprenoid binding | 2 | 40 | 0.007068 | 6.35398528 |
| GOTERM_MF_FAT | GO: 0016620~oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2 | 40 | 0.007068 | 6.35398528 |
| GOTERM_MF_FAT | GO: 0043178~alcohol binding | 2 | 40 | 0.007681 | 6.88755783 |
| GOTERM_BP_FAT | GO: 0006081~cellular aldehyde metabolic process | 2 | 40 | 0.008254 | 7.49884376 |
| GOTERM_MF_FAT | GO: 0046872~metal ion binding | 5 | 100 | 0.010329 | 9.162224 |
| GOTERM_MF_FAT | GO: 0043169~cation binding | 5 | 100 | 0.010724 | 9.49713106 |
| GOTERM_MF_FAT | GO: 0043167~ion binding | 5 | 100 | 0.011375 | 10.0467972 |
| GOTERM_MF_FAT | GO: 0051287~NAD or NADH binding | 2 | 40 | 0.014404 | 12.5650629 |
| GOTERM_BP_FAT | GO: 0010033~response to organic substance | 3 | 60 | 0.015839 | 13.9415732 |
| GOTERM_BP_FAT | GO: 0045471~response to ethanol | 2 | 40 | 0.018792 | 16.339828 |
| GOTERM_MF_FAT | GO: 0019842~vitamin binding | 2 | 40 | 0.039459 | 31.1056241 |
| GOTERM_MF_FAT | GO: 0050662~coenzyme binding | 2 | 40 | 0.054616 | 40.5359414 |
| GOTERM_MF_FAT | GO: 0009055~electron carrier activity | 2 | 40 | 0.066378 | 47.0415213 |
| GOTERM_MF_FAT | GO: 0048037~cofactor binding | 2 | 40 | 0.074545 | 51.1777008 |
ADH – alcohol dehydrogenase; FDR – false discovery rate.
Enrichment analysis of KEGG pathways of ADH family members.
| Term | Count | % | P value | FDR | Genes |
|---|---|---|---|---|---|
| hsa00071: Fatty acid metabolism | 5 | 100 | 3.28E-09 | 1.69E-06 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
| hsa00350: Tyrosine metabolism | 5 | 100 | 4.88E-09 | 2.52E-06 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
| hsa00830: Retinol metabolism | 5 | 100 | 1.14E-08 | 5.86E-06 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
| hsa00980: Metabolism of xenobiotics by cytochrome P450 | 5 | 100 | 1.75E-08 | 9.03E-06 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
| hsa00010: Glycolysis/Gluconeogenesis | 5 | 100 | 1.75E-08 | 9.03E-06 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
| hsa00982: Drug metabolism | 5 | 100 | 2.00E-08 | 1.03E-05 | ADH4, ADH1C, ADH5, ADH6, ADH1B, ADH7, ADH1A |
ADH – alcohol dehydrogenase; ADH1A – alcohol dehydrogenase 1A; ADH1B – alcohol dehydrogenase 1B; ADH1C – alcohol dehydrogenase 1C; ADH2 – alcohol dehydrogenase 2; ADH3 – alcohol dehydrogenase 3; ADH4 – alcohol dehydrogenase 4; ADH5 – alcohol dehydrogenase 5; ADH6 – alcohol dehydrogenase 6; ADH7 – alcohol dehydrogenase 7; FDR – false discovery rate.
Figure 3Survival analysis of ADH1A (207820_at) in NSCLC. (A) Survival analysis of ADH1A in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH1A in adenocarcinoma; (C) Survival analysis of ADH1A in squamous cell cancer.
Figure 4Survival analysis of ADH1B (209612_at) in NSCLC. (A) Survival analysis of ADH1B in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH1B in adenocarcinoma; (C) Survival analysis of ADH1B in squamous cell cancer.
Figure 5Survival analysis of ADH1C (206262_at) in NSCLC. (A) Survival analysis of ADH1C in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH1C in adenocarcinoma; (C) Survival analysis of ADH1C in squamous cell cancer.
Figure 6Survival analysis of ADH4 (223781_at) in NSCLC. (A) Survival analysis of ADH4 in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH4 in adenocarcinoma; (C) Survival analysis of ADH4 in squamous cell cancer.
Figure 7Survival analysis of ADH5 (208847_at) in NSCLC. (A) Survival analysis of ADH5 in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH5 in adenocarcinoma; (C) Survival analysis of ADH5 in squamous cell cancer.
Figure 8Survival analysis of ADH6 (207544_at) in NSCLC. (A) Survival analysis of ADH6 in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH6 in adenocarcinoma; (C) Survival analysis of ADH6 in squamous cell cancer.
Figure 9Survival analysis of ADH7 (210505_at) in NSCLC. (A) Survival analysis of ADH7 in both adenocarcinoma and squamous cell cancer; (B) Survival analysis of ADH7 in adenocarcinoma; (C) Survival analysis of ADH7 in squamous cell cancer.