Literature DB >> 29800904

Recent advances in FRET for the study of protein interactions and dynamics.

Kenji Okamoto1, Yasushi Sako2.   

Abstract

Förster/fluorescence resonance energy transfer (FRET) has been extensively used to detect the binding state or conformation of biomolecules. In the past few decades, various in vitro and in vivo applications of FRET measurement have been developed, including FRET probes, in-cell measurements, single-molecule measurements, and combination with computer simulation. In this review, we describe recent advances in FRET methods for examining biomolecular interactions and dynamics: (i) phasor plot analysis for quantitative analysis of protein interactions, (ii) single-molecule FRET measurement for detecting conformational dynamics in live cells, and (iii) data assimilation using molecular dynamics simulation to evaluate conformation of the whole protein.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29800904     DOI: 10.1016/j.sbi.2017.03.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  Ligand-Activatable BRET9 Probes for Imaging Molecular Events in Living Mammalian Cells.

Authors:  Sung-Bae Kim; Rika Fujii; Ramasamy Paulmurugan
Journal:  Methods Mol Biol       Date:  2021

2.  Paired Simulations and Experimental Investigations into the Calcium-Dependent Conformation of Albumin.

Authors:  Dharmeshkumar Patel; Stephanie L Haag; Jagdish Suresh Patel; F Marty Ytreberg; Matthew T Bernards
Journal:  J Chem Inf Model       Date:  2022-02-23       Impact factor: 4.956

3.  Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.

Authors:  Masahiro Shimizu; Aya Okuda; Ken Morishima; Rintaro Inoue; Nobuhiro Sato; Yasuhiro Yunoki; Reiko Urade; Masaaki Sugiyama
Journal:  Sci Rep       Date:  2022-06-15       Impact factor: 4.996

4.  In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function.

Authors:  Rajni Verma; Katie Mitchell-Koch
Journal:  Catalysts       Date:  2017-07-14       Impact factor: 4.146

5.  Determination of oligomerization state of Drp1 protein in living cells at nanomolar concentrations.

Authors:  Karina Kwapiszewska; Tomasz Kalwarczyk; Bernadeta Michalska; Krzysztof Szczepański; Jędrzej Szymański; Paulina Patalas-Krawczyk; Tomasz Andryszewski; Michalina Iwan; Jerzy Duszyński; Robert Hołyst
Journal:  Sci Rep       Date:  2019-04-11       Impact factor: 4.379

6.  Advanced FRET normalization allows quantitative analysis of protein interactions including stoichiometries and relative affinities in living cells.

Authors:  Bernhard Hochreiter; Markus Kunze; Bernhard Moser; Johannes A Schmid
Journal:  Sci Rep       Date:  2019-06-03       Impact factor: 4.379

7.  Functional dynamics of a single tryptophan residue in a BLUF protein revealed by fluorescence spectroscopy.

Authors:  Kristof Karadi; Sofia M Kapetanaki; Katalin Raics; Ildiko Pecsi; Robert Kapronczai; Zsuzsanna Fekete; James N Iuliano; Jinnette Tolentino Collado; Agnieszka A Gil; Jozsef Orban; Miklos Nyitrai; Greg M Greetham; Marten H Vos; Peter J Tonge; Stephen R Meech; Andras Lukacs
Journal:  Sci Rep       Date:  2020-02-06       Impact factor: 4.379

8.  Extracellular CIRP induces macrophage endotoxin tolerance through IL-6R-mediated STAT3 activation.

Authors:  Mian Zhou; Monowar Aziz; Naomi-Liza Denning; Hao-Ting Yen; Gaifeng Ma; Ping Wang
Journal:  JCI Insight       Date:  2020-03-12

9.  Sensitive Label-Free Thermal Stability Assay for Protein Denaturation and Protein-Ligand Interaction Studies.

Authors:  Emmiliisa Vuorinen; Salla Valtonen; Ville Eskonen; Taru Kariniemi; Jelena Jakovleva; Kari Kopra; Harri Härmä
Journal:  Anal Chem       Date:  2020-02-12       Impact factor: 6.986

Review 10.  Large-Scale Conformational Changes and Protein Function: Breaking the in silico Barrier.

Authors:  Laura Orellana
Journal:  Front Mol Biosci       Date:  2019-11-05
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