Literature DB >> 29799158

Osmium Tag for Post-transcriptionally Modified RNA.

Turja Kanti Debnath1, Akimitsu Okamoto1,2.   

Abstract

5-Methylcytidine (m5 C) and 5-methyluridine (m5 U) are highly abundant post-transcriptionally modified nucleotides that are observed in various natural RNAs. Such nucleotides were labeled through a chemical approach, as both underwent oxidation at the C5=C6 double bond, leading to the formation of osmium-bipyridine complexes, which could be identified by mass spectrometry. This osmium tag made it possible to distinguished m5 C and m5 U from their isomers, 2'-O-methylcytidine and 2'-O-methyluridine, respectively. Queuosine and 2-methylthio-N6 -isopentenyladenosine in tRNA were also tagged through complex formation.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA; mass spectrometry; nucleotides; osmium; oxidation

Mesh:

Substances:

Year:  2018        PMID: 29799158     DOI: 10.1002/cbic.201800274

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  4 in total

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2.  Nanopore device-based fingerprinting of RNA oligos and microRNAs enhanced with an Osmium tag.

Authors:  Madiha Sultan; Anastassia Kanavarioti
Journal:  Sci Rep       Date:  2019-10-02       Impact factor: 4.379

3.  Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL).

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Journal:  Angew Chem Int Ed Engl       Date:  2020-02-28       Impact factor: 15.336

4.  Ready-to-use nanopore platform for the detection of any DNA/RNA oligo at attomole range using an Osmium tagged complementary probe.

Authors:  Albert S W Kang; Janette G Bernasconi; William Jack; Anastassia Kanavarioti
Journal:  Sci Rep       Date:  2020-11-13       Impact factor: 4.379

  4 in total

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