Literature DB >> 29796005

Molecular Characterization and Directed Evolution of a Metagenome-Derived l-Cysteine Sulfinate Decarboxylase.

Jie Deng1,2, Qiaofen Wu2, Hua Gao2, Qian Ou2, Bo Wu2, Bing Yan1, Chengjian Jiang1,2.   

Abstract

l-Cysteine sulfinate decarboxylase (CSD, EC 4.1.1.29), the rate-limiting enzyme in taurine synthesis pathway, catalyzes l-cysteine sulfinic acid to form hypotaurine. Identification of the novel CSD that could improve the biosynthetic efficiency of taurine is important. An unexplored decarboxylase gene named undec1A was identified in a previous work through sequence-based screening of uncultured soil microorganisms. Random mutagenesis through sequential error-prone polymerase chain reaction was used in Undec1A. A mutant Undec1A-1180, which was obtained from mutagenesis library, had 5.62-fold higher specific activity than Undec1A at 35 °C and pH=7.0. Molecular docking results indicated that amino acid residues Ala235, Val237, Asp239, Ile267, Ala268, and Lys298 in the Undec1A-1180 protein helped recognize and catalyze the substrate molecules of l-cysteine sulfinic acid. These results could serve as a basis for elucidating the characteristics of the Undec1A-1180. Directed evolution technology is a convenient way to improve the biotechnological applications of metagenome-derived genes.

Entities:  

Keywords:  l-cysteine sulfinate decarboxylase; metagenomic library; sequential error-prone PCR; taurine

Year:  2018        PMID: 29796005      PMCID: PMC5956266          DOI: 10.17113/ftb.56.01.18.5415

Source DB:  PubMed          Journal:  Food Technol Biotechnol        ISSN: 1330-9862            Impact factor:   3.918


  29 in total

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3.  Gene expressions of taurine transporter and taurine biosynthetic enzyme during mouse and chicken embryonic development.

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Review 4.  Isolation of membrane protein complexes by blue native electrophoresis.

Authors:  Veronika Reisinger; Lutz A Eichacker
Journal:  Methods Mol Biol       Date:  2008

Review 5.  Metagenomic exploration of antibiotic resistance in soil.

Authors:  Jean-Michel Monier; Sandrine Demanèche; Tom O Delmont; Alban Mathieu; Timothy M Vogel; Pascal Simonet
Journal:  Curr Opin Microbiol       Date:  2011-05-23       Impact factor: 7.934

6.  Characterization of a metagenome-derived protease from contaminated agricultural soil microorganisms and its random mutagenesis.

Authors:  Chengjian Jiang; Liang Zhang; Fajia Li; Can Meng; Rong Zeng; Jie Deng; Peihong Shen; Qian Ou; Bo Wu
Journal:  Folia Microbiol (Praha)       Date:  2017-04-05       Impact factor: 2.099

7.  Cysteine dioxygenase and cysteine sulfinate decarboxylase genes of the deep-sea mussel Bathymodiolus septemdierum: possible involvement in hypotaurine synthesis and adaptation to hydrogen sulfide.

Authors:  Toshihiro Nagasaki; Yuki Hongo; Tomoko Koito; Ikumi Nakamura-Kusakabe; Shigeru Shimamura; Yoshihiro Takaki; Takao Yoshida; Tadashi Maruyama; Koji Inoue
Journal:  Amino Acids       Date:  2014-12-16       Impact factor: 3.520

Review 8.  Metagenomics for studying unculturable microorganisms: cutting the Gordian knot.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Genome Biol       Date:  2005-08-01       Impact factor: 13.583

9.  Local structural differences in homologous proteins: specificities in different SCOP classes.

Authors:  Agnel Praveen Joseph; Hélène Valadié; Narayanaswamy Srinivasan; Alexandre G de Brevern
Journal:  PLoS One       Date:  2012-06-22       Impact factor: 3.240

10.  Differential regulation of taurine biosynthesis in rainbow trout and Japanese flounder.

Authors:  Xuan Wang; Gen He; Kangsen Mai; Wei Xu; Huihui Zhou
Journal:  Sci Rep       Date:  2016-02-16       Impact factor: 4.379

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