Literature DB >> 29795936

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization.

Danilo Bzdok1,2,3, Gaël Varoquaux3, Bertrand Thirion3.   

Abstract

Brain-imaging technology has boosted the quantification of neurobiological phenomena underlying human mental operations and their disturbances. Since its inception, drawing inference on neurophysiological effects hinged on classical statistical methods, especially, the general linear model. The tens of thousands of variables per brain scan were routinely tackled by independent statistical tests on each voxel. This circumvented the curse of dimensionality in exchange for neurobiologically imperfect observation units, a challenging multiple comparisons problem, and limited scaling to currently growing data repositories. Yet, the always bigger information granularity of neuroimaging data repositories has lunched a rapidly increasing adoption of statistical learning algorithms. These scale naturally to high-dimensional data, extract models from data rather than prespecifying them, and are empirically evaluated for extrapolation to unseen data. The present article portrays commonalities and differences between long-standing classical inference and upcoming generalization inference relevant for conducting neuroimaging research.

Entities:  

Keywords:  cross-validation; epistemology; hypothesis testing; neuroscience; statistical inference

Year:  2016        PMID: 29795936      PMCID: PMC5965634          DOI: 10.1177/0013164416667982

Source DB:  PubMed          Journal:  Educ Psychol Meas        ISSN: 0013-1644            Impact factor:   2.821


  41 in total

1.  Voxel-based lesion-symptom mapping.

Authors:  Elizabeth Bates; Stephen M Wilson; Ayse Pinar Saygin; Frederic Dick; Martin I Sereno; Robert T Knight; Nina F Dronkers
Journal:  Nat Neurosci       Date:  2003-05       Impact factor: 24.884

Review 2.  Ten ironic rules for non-statistical reviewers.

Authors:  Karl Friston
Journal:  Neuroimage       Date:  2012-04-13       Impact factor: 6.556

3.  The human brain project.

Authors:  Henry Markram
Journal:  Sci Am       Date:  2012-06       Impact factor: 2.142

4.  Why significant variables aren't automatically good predictors.

Authors:  Adeline Lo; Herman Chernoff; Tian Zheng; Shaw-Hwa Lo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

5.  False discovery rate revisited: FDR and topological inference using Gaussian random fields.

Authors:  Justin R Chumbley; Karl J Friston
Journal:  Neuroimage       Date:  2008-05-23       Impact factor: 6.556

Review 6.  Machine learning: Trends, perspectives, and prospects.

Authors:  M I Jordan; T M Mitchell
Journal:  Science       Date:  2015-07-17       Impact factor: 47.728

7.  Focal physiological uncoupling of cerebral blood flow and oxidative metabolism during somatosensory stimulation in human subjects.

Authors:  P T Fox; M E Raichle
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

8.  Sharing the wealth: Neuroimaging data repositories.

Authors:  Simon Eickhoff; Thomas E Nichols; John D Van Horn; Jessica A Turner
Journal:  Neuroimage       Date:  2016-01-01       Impact factor: 6.556

9.  Large-scale automated synthesis of human functional neuroimaging data.

Authors:  Tal Yarkoni; Russell A Poldrack; Thomas E Nichols; David C Van Essen; Tor D Wager
Journal:  Nat Methods       Date:  2011-06-26       Impact factor: 28.547

Review 10.  How machine learning is shaping cognitive neuroimaging.

Authors:  Gael Varoquaux; Bertrand Thirion
Journal:  Gigascience       Date:  2014-11-17       Impact factor: 6.524

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  4 in total

1.  Interpretability of Multivariate Brain Maps in Linear Brain Decoding: Definition, and Heuristic Quantification in Multivariate Analysis of MEG Time-Locked Effects.

Authors:  Seyed Mostafa Kia; Sandro Vega Pons; Nathan Weisz; Andrea Passerini
Journal:  Front Neurosci       Date:  2017-01-23       Impact factor: 4.677

2.  Data-driven, voxel-based analysis of brain PET images: Application of PCA and LASSO methods to visualize and quantify patterns of neurodegeneration.

Authors:  Ivan S Klyuzhin; Jessie F Fu; Andy Hong; Matthew Sacheli; Nikolay Shenkov; Michele Matarazzo; Arman Rahmim; A Jon Stoessl; Vesna Sossi
Journal:  PLoS One       Date:  2018-11-05       Impact factor: 3.240

3.  Functional specialization within the inferior parietal lobes across cognitive domains.

Authors:  Danilo Bzdok; Gesa Hartwigsen; Ole Numssen
Journal:  Elife       Date:  2021-03-02       Impact factor: 8.140

4.  Probabilistic Prediction of Nonadherence to Psychiatric Disorder Medication from Mental Health Forum Data: Developing and Validating Bayesian Machine Learning Classifiers.

Authors:  Meng Ji; Wenxiu Xie; Mengdan Zhao; Xiaobo Qian; Chi-Yin Chow; Kam-Yiu Lam; Jun Yan; Tianyong Hao
Journal:  Comput Intell Neurosci       Date:  2022-04-15
  4 in total

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