| Literature DB >> 29795636 |
Vivian Leung1, Frédérik Rousseau-Blass1, Guy Beauchamp1, Daniel S J Pang1.
Abstract
Poor research reporting is a major contributing factor to low study reproducibility, financial and animal waste. The ARRIVE (Animal Research: Reporting of In Vivo Experiments) guidelines were developed to improve reporting quality and many journals support these guidelines. The influence of this support is unknown. We hypothesized that papers published in journals supporting the ARRIVE guidelines would show improved reporting compared with those in non-supporting journals. In a retrospective, observational cohort study, papers from 5 ARRIVE supporting (SUPP) and 2 non-supporting (nonSUPP) journals, published before (2009) and 5 years after (2015) the ARRIVE guidelines, were selected. Adherence to the ARRIVE checklist of 20 items was independently evaluated by two reviewers and items assessed as fully, partially or not reported. Mean percentages of items reported were compared between journal types and years with an unequal variance t-test. Individual items and sub-items were compared with a chi-square test. From an initial cohort of 956, 236 papers were included: 120 from 2009 (SUPP; n = 52, nonSUPP; n = 68), 116 from 2015 (SUPP; n = 61, nonSUPP; n = 55). The percentage of fully reported items was similar between journal types in 2009 (SUPP: 55.3 ± 11.5% [SD]; nonSUPP: 51.8 ± 9.0%; p = 0.07, 95% CI of mean difference -0.3-7.3%) and 2015 (SUPP: 60.5 ± 11.2%; nonSUPP; 60.2 ± 10.0%; p = 0.89, 95%CI -3.6-4.2%). The small increase in fully reported items between years was similar for both journal types (p = 0.09, 95% CI -0.5-4.3%). No paper fully reported 100% of items on the ARRIVE checklist and measures associated with bias were poorly reported. These results suggest that journal support for the ARRIVE guidelines has not resulted in a meaningful improvement in reporting quality, contributing to ongoing waste in animal research.Entities:
Mesh:
Year: 2018 PMID: 29795636 PMCID: PMC5967836 DOI: 10.1371/journal.pone.0197882
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
The ARRIVE guidelines checklist: Operationalized items and sub-items to facilitate assessment of reporting [6].
| Item/sub-item | ARRIVE items and sub-items | Possible categories | Descriptor |
|---|---|---|---|
| 1 | Accurate and concise description of article content | ||
| 2 | Accurate summary of background, research objectives, species or strain of animal used, key methods, principle findings, and conclusions | ||
| Introduction | |||
| 3 | |||
| 3a | Motivation for and context of study | not reported; reported | Sufficient scientific background (with references) on motivation and context of study, with explanation of experimental approach and rationale |
| 3b | Animal species and models justified | not reported; reported | Explain how and why animal species and models were chosen |
| 4 | Objectives or hypotheses of study are clearly described | ||
| Methods | |||
| 5 | Statement to indicate ethical review permissions, relevant licenses and national or institutional guidelines for care and use of animals | ||
| 6 | |||
| 6a | Number of groups | not reported; reported; N/A | Number of experimental and control groups clearly stated; N/A if single group study |
| 6b | Randomization | not reported; reported; N/A | Statement that randomization was used or justification for no randomization; N/A if single group study |
| 6c | Blinding | not reported; reported; N/A | Statement that blinding was used or justification for no blinding; N/A if single group study. Classified as “reported” if blinding was mentioned for any step (e.g. blinding to allocation, blinding to outcome assessment, treatment administration etc.). |
| 6d | Experimental unit | not reported; reported | Reader is able to understand if comparisons were between a single animal or a group of animals |
| 7 | |||
| 7a | How | not reported; reported | Description of experiment performed and details of specialised equipment used can be replicated with the information present |
| 7b | When | not reported; reported; N/A | Statement of when during the day the procedures took place and when according to the experimental timeline; N/A if paper was assessing continuous assessment or if light cycle unlikely to affect assessment (e.g. lameness) |
| 7c | Where | not reported; reported | Some indication of where each procedure took place |
| 7d | Why | not reported; reported | Rationale for why chosen experimental procedures were performed |
| 7e | Drugs used | not reported; reported | Statement of the name, dose, route, and frequency of the analgesics or anesthetics used; N/A if procedures can be obviously performed without analgesic or anesthetics |
| 8 | |||
| 8a | Species | not reported; reported | Statement of species used |
| 8b | Strain | not reported; reported | Statement of strain used |
| 8c | Sex | not reported; reported | Statement of sex used |
| 8d | Developmental stage | not reported; reported | Statement of age of animals used |
| 8e | Weight | not reported; reported; N/A | Statement of the animals’ weight; N/A for zoo animals |
| 8f | Source | not reported; reported; N/A | Statement of animals’ source; N/A for zoo animals |
| 8g | Health/immune status | not reported; reported | Statement of animals’ heath (i.e. screening of tested animals or sentinel animals for lab animals) or general statement that animals were healthy for farm, companion, and zoo animals |
| 9 | |||
| 9a | Type of cage/housing | not reported; reported; N/A | Statement of cage dimensions and product source for lab animals and a general description for companion and zoo animals; N/A if paper was on animals being process for slaughter (e.g. study at abattoir) |
| 9b | Bedding material | not reported; reported; N/A | Statement of bedding type and source for lab animals and a general description for non-lab animals; N/A for fish species or animals being processed for slaughter |
| 9c | Type of facility | not reported; reported; N/A | Statement of facility type and a general description for non-lab animal; N/A if paper was on animals being process for slaughter |
| 9d | Number of cage companions | not reported; reported; N/A | Statement of number of animals housed together or individually; N/A if paper was on animals being processed for slaughter |
| 9e | Light/dark cycle | not reported; reported; N/A | Statement of time lights were on/off for lab animals; information of place of facility and time of experiment is accepted as an alternative for farm and zoo animals |
| 9f | Temperature | not reported; reported; N/A | Statement of temperature animals were housed in; information of place of facility and time of experiment is acceptable as an alternative for farm and zoo animals |
| 9g | Type of food | not reported; reported; N/A | Statement of food type and sources for lab animals; general description (e.g. hay for cattle) acceptable for non-lab animals; N/A if paper was on animals being process for slaughter |
| 9h | Water access | not reported; reported; N/A | Statement that water was provided; N/A for fish species or animals being processed for slaughter |
| 9i | Environmental enrichment | not reported; reported; N/A | Statement that a form of enrichment was provided; N/A if paper was on animals being processed for slaughter |
| 9j | Humidity | not reported; reported; N/A | Statement of humidity for lab animals; information of place and time of experiments is acceptable as an alternative for farm and zoo animals |
| 9k | Welfare assessment | not reported; reported; N/A | Statement that a form of welfare assessment was in place; point was awarded by default if the paper was a welfare paper; N/A if the intervention performed was not for the benefit of the animals involved |
| 9l | Welfare interventions | not reported; reported; N/A | Statement of what type of welfare intervention prepared; intervention must be in response to animals’ well-being and not from an outcome of the experiment e.g. Eye issues from eye procedure vs. Weight loss; N/A if no adverse event is expected (i.e. animal assessed after death) |
| 9m | Time of welfare assessment or intervention | not reported; reported; N/A | Statement of when welfare assessment or intervention occurred; N/A if no adverse event expected (e.g. study was assessing a new enrichment) |
| 10 | |||
| 10a | Total number of animals used | not reported; reported | Statement specifying in absolute numbers of the total number of animals used in each experiment and treatment groups |
| 10b | Sample size calculation | not reported; reported; N/A | Statement that sample size calculation was performed; N/A if pilot study |
| 10c | Number of independent replications | reported; N/A | Statement of the number of independent replications performed |
| 11 | |||
| 11a | Allocation method | not reported; reported; N/A | Statement of how animals were allocated to groups, including randomization or matching if done; N/A if single treatment group |
| 11b | Treatment and assessment of animals | not reported; reported | Describe the order in which the animals in the different experimental groups were treated and assessed |
| 12 | Define the primary and secondary experimental outcomes assessed | ||
| 13 | |||
| 13a | Details of statistical methods used | not reported; reported | Statistical tests performed for each analysis was clear |
| 13b | Specify unit of analysis | not reported; reported | Unit of analysis was clear for each data set |
| 13c | Assess normality | not reported; reported | Statement that assessment of normality was performed |
| Results | |||
| 14 | Statement to report relevant characteristics and health status of animals were collected | ||
| 15 | |||
| 15a | Animals included | not reported; reported | Statement of the number of animals included/excluded in absolute numbers |
| 15b | Reasons for animal exclusion | not reported; reported; N/A | Statement detailing why animals were excluded; N/A if no animals excluded |
| 16 | Results for each analysis was clear with a measure of precision (e.g. standard error or confidence interval) | ||
| 17 | |||
| 17a | Details of adverse events | not reported; reported; N/A | Reported details of adverse events that occurred or a statement to report no adverse events occurred; N/A if no adverse events expected |
| 17b | Modifications to reduce adverse events | not reported; reported; N/A | Modifications to experimental procedures made to reduce adverse events were described; N/A if no adverse event expected |
| Discussion | |||
| 18 | |||
| 18a | Interpretation | not reported; reported | Interpret results, taking into account study objectives and hypotheses, current theory and other relevant studies in literature |
| 18b | Study limitations | not reported; reported | Commented on the study limitations including potential sources of bias, any limitations of the animal model and the imprecision associated with results |
| 18c | Implications for 3Rs of animal use | not reported; reported; N/A | Described any implications of experimental methods or findings for the replacement, refinement or reduction (3Rs) of the use of animals in research; point was awarded if it was a welfare paper; N/A if assessing anatomic response to an analgesic or anesthetic (e.g. buprenorphine effects on limb volume) |
| 19 | Commented on whether the findings of this study are likely to translate to other species or systems, including any relevance to human biology; N/A for welfare paper unless specified in discussion | ||
| 20 | List all funding sources and the role of the funder(s) in the study |
Items are bolded and listed with a number. Sub-items are listed with a number and letter.
*Acceptable to report only place and time of year for 9e) light/dark cycle; 9f) temperature; 9j) humidity as this information can be inferred if animals (production and zoo types) are housed outdoors
** Number of independent replications was scored as not applicable (N/A) when not reported as this sub-item was not required for a complete study.
Fig 1Flow diagram of paper selection process.
Papers were selected from studies reporting research in anesthesia, analgesia and animal welfare from 5 veterinary journals.
Overall reporting quality in journals supporting (SUPP) and not supporting (nonSUPP) the ARRIVE guidelines for 2009 and 2015.
| 2009 (%) | 2015 (%) | ||
|---|---|---|---|
| SUPP | 55.3 ± 11.5 | 60.5 ± 11.2 | 0.02 [1.0–9.4] |
| Non-SUPP | 51.8 ± 9.0 | 60.2 ± 10.0 | 0.0001 [5.0–11.8] |
| 0.07 [-0.3–7.3] | 0.89 [-3.6–4.2] |
Values are mean percentages of fully reported items. The numbers of papers examined were: SUPP 2009; n = 52, SUPP 2015; n = 61, nonSUPP 2009; n = 68, nonSUPP 2015; n = 55.
ap values of differences between journal types within the same year.
bp-values of differences between years for the same journal type. 95% confidence interval (95% CI) is for the mean difference.
Papers fully reporting ARRIVE checklist items in supporting (SUPP) and non-supporting (nonSUPP) journals in 2009 and 2015.
| Item | SUPP | NonSUPP | |||||
|---|---|---|---|---|---|---|---|
| 2009 (N = 52) | 2015 (N = 61) | 2009 (N = 68) | 2015 (N = 55) | ||||
| n/N (% reported) | n/N (% reported) | p-value | n/N (% reported) | n/N (% reported) | p-value | ||
| 1 | Title | 52/52 (100) | 61/61 (100) | 1 | 68/68 (100) | 55/55 (100) | 1 |
| 2 | Abstract | 36/52 (69.2) | 56/61 (91.8) | 45/68 (66.2) | 44/55 (80.0) | 0.11 | |
| 3 | Background | 52/52 (100) | 60/61 (98.4) | 1 | 68/68 (100) | 55/55 (100) | 1 |
| 4 | Objectives | 47/52 (90.2) | 60/61 (98.4) | 0.09 | 68/68 (100) | 55/55 (100) | 1 |
| 5 | Ethical statement | 39/52 (75.0) | 52/61 (85.2) | 0.23 | 25/68 (36.8) | 45/55 (81.8) | |
| 6 | Study design | 10/52 (19.2) | 19/61 (31.1) | 0.20 | 10/68 (14.7) | 15/55 (27.3) | 0.12 |
| 7 | Experimental procedure | 34/52 (65.4) | 30/61 (49.2) | 0.09 | 45/68 (66.2) | 42/55 (76.4) | 0.24 |
| 8 | Experimental animals | 8/52 (15.4) | 18/61 (29.5) | 0.12 | 1/68 (1.5) | 6/55 (10.9) | |
| 9 | Housing and husbandry | 2/51 (3.9) | 13/61 (21.3) | 3/67 (4.5) | 8/54 (14.8) | 0.06 | |
| 10 | Sample size | 2/52 (3.8) | 13/61 (21.3) | 1/68 (1.5) | 3/55 (5.5) | 0.32 | |
| 11 | Allocating animals | 11/52 (21.2) | 16/61 (26.2) | 0.66 | 14/68 (20.6) | 17/55 (30.9) | 0.22 |
| 12 | Experimental outcomes | 52/52 (100) | 61/61 (100) | 1 | 66/67 (98.5) | 55/55 (100) | 1 |
| 13 | Statistical methods | 23/52 (44.2) | 29/61 (47.5) | 0.85 | 38/68 (55.9) | 32/55 (58.2) | 0.86 |
| 14 | Baseline data | 24/41 (58.5) | 27/50 (54.0) | 0.68 | 20/30 (66.7) | 18/35 (51.4) | 0.31 |
| 15 | Numbers analysed | 29/52 (55.8) | 39/61 (63.9) | 0.44 | 37/68 (54.4) | 25/55 (45.5) | 0.37 |
| 16 | Outcomes and estimation | 45/52 (86.5) | 49/61 (80.3) | 0.45 | 55/68 (80.9) | 49/55 (89.1) | 0.32 |
| 17 | Adverse events | 18/29 (62.1) | 17/41 (41.5) | 0.15 | 4/18 (22.2) | 8/23 (34.8) | 0.50 |
| 17a | Details of adverse events | 25/29 (86.2) | 25/41 (61.0) | 8/18 (44.4) | 20/24 (83.3) | ||
| 18 | Interpretation/scientific implications | 15/52 (28.8) | 20/61 (32.8) | 0.69 | 7/68 (10.3) | 21/55 (38.2) | |
| 19 | Generalisability/translation | - | - | - | - | - | - |
| 20 | Funding | 29/52 (55.8) | 43/61 (70.5) | 0.12 | 48/68 (70.6) | 44/55 (80) | 0.30 |
N = total number of papers where the item was applicable. n = total number of papers reporting the item. p values are for comparisons between years for each journal type.
Fig 2Bar graph of papers fully reporting individual items from the ARRIVE checklist.
Data from papers published in 2015 were pooled from ARRIVE supporting (SUPP, n = 61 papers) and non-supporting (nonSUPP, n = 55 papers) journals. Broken horizontal lines indicate reporting quality thresholds: excellent (> 80%), average (50–80%) and poor (< 50%) [12].
Fig 3Radar plot of ARRIVE checklist sub-items associated with bias reported in ARRIVE supporting (SUPP) and non-supporting (nonSUPP) journals in 2015.