Literature DB >> 29794332

Theory of pore-driven and end-pulled polymer translocation dynamics through a nanopore: an overview.

Jalal Sarabadani1, Tapio Ala-Nissila.   

Abstract

We review recent progress on the theory of dynamics of polymer translocation through a nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore-driven translocation of flexible and a semi-flexible polymers, and the end-pulled case of flexible chains by means of the IFTP theory and extensive molecular dynamics (MD) simulations. The validity of the IFTP theory can be quantified by the waiting time distributions of the monomers which reveal the details of the dynamics of the translocation process. The IFTP theory allows a parameter-free description of the translocation process and can be used to derive exact analytic scaling forms in the appropriate limits, including the influence due to the pore friction that appears as a finite-size correction to asymptotic scaling. We show that in the case of pore-driven semi-flexible and end-pulled polymer chains the IFTP theory must be augmented with an explicit trans side friction term for a quantitative description of the translocation process.

Entities:  

Year:  2018        PMID: 29794332     DOI: 10.1088/1361-648X/aac796

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  3 in total

1.  Electronic Mapping of a Bacterial Genome with Dual Solid-State Nanopores and Active Single-Molecule Control.

Authors:  Arthur Rand; Philip Zimny; Roland Nagel; Chaitra Telang; Justin Mollison; Aaron Bruns; Emily Leff; Walter W Reisner; William B Dunbar
Journal:  ACS Nano       Date:  2022-03-18       Impact factor: 18.027

2.  RNA Pore Translocation with Static and Periodic Forces: Effect of Secondary and Tertiary Elements on Process Activation and Duration.

Authors:  Matteo Becchi; Pietro Chiarantoni; Antonio Suma; Cristian Micheletti
Journal:  J Phys Chem B       Date:  2021-01-26       Impact factor: 2.991

3.  Simulation Study of Chain-like Body Translocation through Conical Pores in Thick Membranes.

Authors:  Zbigniew Domański; Andrzej Z Grzybowski
Journal:  Membranes (Basel)       Date:  2022-01-24
  3 in total

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