Literature DB >> 29793809

DNA-Based Dynamic Reaction Networks.

Ting Fu1, Yifan Lyu2, Hui Liu3, Ruizi Peng3, Xiaobing Zhang3, Mao Ye4, Weihong Tan5.   

Abstract

Deriving from logical and mechanical interactions between DNA strands and complexes, DNA-based artificial reaction networks (RNs) are attractive for their high programmability, as well as cascading and fan-out ability, which are similar to the basic principles of electronic logic gates. Arising from the dream of creating novel computing mechanisms, researchers have placed high hopes on the development of DNA-based dynamic RNs and have strived to establish the basic theories and operative strategies of these networks. This review starts by looking back on the evolution of DNA dynamic RNs; in particular' the most significant applications in biochemistry occurring in recent years. Finally, we discuss the perspectives of DNA dynamic RNs and give a possible direction for the development of DNA circuits.
Copyright © 2018. Published by Elsevier Ltd.

Entities:  

Keywords:  computation; dynamic reaction network; logic circuits; strand-displacement

Mesh:

Substances:

Year:  2018        PMID: 29793809      PMCID: PMC6522144          DOI: 10.1016/j.tibs.2018.04.010

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  10 in total

Review 1.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

Review 2.  DNA nanostructures: A versatile lab-bench for interrogating biological reactions.

Authors:  Andrew J Lee; Christoph Wälti
Journal:  Comput Struct Biotechnol J       Date:  2019-06-14       Impact factor: 7.271

Review 3.  Supramolecular Architectures of Nucleic Acid/Peptide Hybrids.

Authors:  Sayuri L Higashi; Normazida Rozi; Sharina Abu Hanifah; Masato Ikeda
Journal:  Int J Mol Sci       Date:  2020-12-12       Impact factor: 5.923

4.  Development of a neuron model based on DNAzyme regulation.

Authors:  Cong Chen; Ranfeng Wu; Bin Wang
Journal:  RSC Adv       Date:  2021-03-08       Impact factor: 3.361

5.  DNA circuits driven by conformational changes in DNAzyme recognition arms.

Authors:  Xinyi Sun; Xuedong Zheng; Sue Zhao; Yuan Liu; Bin Wang
Journal:  RSC Adv       Date:  2020-02-24       Impact factor: 4.036

6.  DNA circuits compatible encoder and demultiplexer based on a single biomolecular platform with DNA strands as outputs.

Authors:  Tianci Xie; Yuhan Deng; Jiarui Zhang; Zhen Zhang; Zhe Hu; Tongbo Wu
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

7.  DNA Strand Displacement Driven by Host-Guest Interactions.

Authors:  Dilanka V D Walpita Kankanamalage; Jennifer H T Tran; Noah Beltrami; Kun Meng; Xiao Zhou; Pravin Pathak; Lyle Isaacs; Alexander L Burin; Mehnaaz F Ali; Janarthanan Jayawickramarajah
Journal:  J Am Chem Soc       Date:  2022-09-05       Impact factor: 16.383

8.  Integration of photocatalytic and dark-operating catalytic biomimetic transformations through DNA-based constitutional dynamic networks.

Authors:  Chen Wang; Michael P O'Hagan; Ehud Neumann; Rachel Nechushtai; Itamar Willner
Journal:  Nat Commun       Date:  2021-07-09       Impact factor: 14.919

9.  Construction of Multiple Switchable Sensors and Logic Gates Based on Carboxylated Multi-Walled Carbon Nanotubes/Poly(N,N-Diethylacrylamide).

Authors:  Xuemei Wu; Xiaoqing Bai; Yang Ma; Jie Wei; Juan Peng; Keren Shi; Huiqin Yao
Journal:  Sensors (Basel)       Date:  2018-10-08       Impact factor: 3.576

10.  A kinetically controlled platform for ligand-oligonucleotide transduction.

Authors:  Qiu-Long Zhang; Liang-Liang Wang; Yan Liu; Jiao Lin; Liang Xu
Journal:  Nat Commun       Date:  2021-08-02       Impact factor: 14.919

  10 in total

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