Literature DB >> 29790102

Classification of malignant and benign lung nodules using taxonomic diversity index and phylogenetic distance.

Robherson Wector de Sousa Costa1, Giovanni Lucca França da Silva2, Antonio Oseas de Carvalho Filho3, Aristófanes Corrêa Silva2, Anselmo Cardoso de Paiva2, Marcelo Gattass4.   

Abstract

Lung cancer presents the highest cause of death among patients around the world, in addition of being one of the smallest survival rates after diagnosis. Therefore, this study proposes a methodology for diagnosis of lung nodules in benign and malignant tumors based on image processing and pattern recognition techniques. Mean phylogenetic distance (MPD) and taxonomic diversity index (Δ) were used as texture descriptors. Finally, the genetic algorithm in conjunction with the support vector machine were applied to select the best training model. The proposed methodology was tested on computed tomography (CT) images from the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI), with the best sensitivity of 93.42%, specificity of 91.21%, accuracy of 91.81%, and area under the ROC curve of 0.94. The results demonstrate the promising performance of texture extraction techniques using mean phylogenetic distance and taxonomic diversity index combined with phylogenetic trees. Graphical Abstract Stages of the proposed methodology.

Entities:  

Keywords:  Lung nodules diagnosis; Mean phylogenetic distance; Medical image; Phylogenetic tree; Taxonomic diversity index

Mesh:

Year:  2018        PMID: 29790102     DOI: 10.1007/s11517-018-1841-0

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  12 in total

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Authors:  Campbell O Webb
Journal:  Am Nat       Date:  2000-08       Impact factor: 3.926

2.  The solitary pulmonary nodule.

Authors:  Johnsey L Leef; Jeffrey S Klein
Journal:  Radiol Clin North Am       Date:  2002-01       Impact factor: 2.303

3.  Probabilistic lung nodule classification with belief decision trees.

Authors:  Dmitriy Zinovev; Jonathan Feigenbaum; Jacob Furst; Daniela Raicu
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4.  Fleischner Society: glossary of terms for thoracic imaging.

Authors:  David M Hansell; Alexander A Bankier; Heber MacMahon; Theresa C McLoud; Nestor L Müller; Jacques Remy
Journal:  Radiology       Date:  2008-01-14       Impact factor: 11.105

5.  Performance analysis of a new computer aided detection system for identifying lung nodules on chest radiographs.

Authors:  Russell C Hardie; Steven K Rogers; Terry Wilson; Adam Rogers
Journal:  Med Image Anal       Date:  2007-10-25       Impact factor: 8.545

6.  Classification of breast regions as mass and non-mass based on digital mammograms using taxonomic indexes and SVM.

Authors:  Fernando Soares Sérvulo de Oliveira; Antonio Oseas de Carvalho Filho; Aristófanes Corrêa Silva; Anselmo Cardoso de Paiva; Marcelo Gattass
Journal:  Comput Biol Med       Date:  2014-12-10       Impact factor: 4.589

Review 7.  Current concepts on the molecular pathology of non-small cell lung carcinoma.

Authors:  Junya Fujimoto; Ignacio I Wistuba
Journal:  Semin Diagn Pathol       Date:  2014-06-12       Impact factor: 3.464

8.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans.

Authors:  Samuel G Armato; Geoffrey McLennan; Luc Bidaut; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Binsheng Zhao; Denise R Aberle; Claudia I Henschke; Eric A Hoffman; Ella A Kazerooni; Heber MacMahon; Edwin J R Van Beeke; David Yankelevitz; Alberto M Biancardi; Peyton H Bland; Matthew S Brown; Roger M Engelmann; Gary E Laderach; Daniel Max; Richard C Pais; David P Y Qing; Rachael Y Roberts; Amanda R Smith; Adam Starkey; Poonam Batrah; Philip Caligiuri; Ali Farooqi; Gregory W Gladish; C Matilda Jude; Reginald F Munden; Iva Petkovska; Leslie E Quint; Lawrence H Schwartz; Baskaran Sundaram; Lori E Dodd; Charles Fenimore; David Gur; Nicholas Petrick; John Freymann; Justin Kirby; Brian Hughes; Alessi Vande Casteele; Sangeeta Gupte; Maha Sallamm; Michael D Heath; Michael H Kuhn; Ekta Dharaiya; Richard Burns; David S Fryd; Marcos Salganicoff; Vikram Anand; Uri Shreter; Stephen Vastagh; Barbara Y Croft
Journal:  Med Phys       Date:  2011-02       Impact factor: 4.071

9.  Computer-aided classification of lung nodules on computed tomography images via deep learning technique.

Authors:  Kai-Lung Hua; Che-Hao Hsu; Shintami Chusnul Hidayati; Wen-Huang Cheng; Yu-Jen Chen
Journal:  Onco Targets Ther       Date:  2015-08-04       Impact factor: 4.147

10.  Computer-Aided Diagnosis with Deep Learning Architecture: Applications to Breast Lesions in US Images and Pulmonary Nodules in CT Scans.

Authors:  Jie-Zhi Cheng; Dong Ni; Yi-Hong Chou; Jing Qin; Chui-Mei Tiu; Yeun-Chung Chang; Chiun-Sheng Huang; Dinggang Shen; Chung-Ming Chen
Journal:  Sci Rep       Date:  2016-04-15       Impact factor: 4.379

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  2 in total

1.  Multi-model Ensemble Learning Architecture Based on 3D CNN for Lung Nodule Malignancy Suspiciousness Classification.

Authors:  Hong Liu; Haichao Cao; Enmin Song; Guangzhi Ma; Xiangyang Xu; Renchao Jin; Chuhua Liu; Chih-Cheng Hung
Journal:  J Digit Imaging       Date:  2020-10       Impact factor: 4.056

2.  A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer.

Authors:  Ahmed Shaffie; Ahmed Soliman; Xiao-An Fu; Michael Nantz; Guruprasad Giridharan; Victor van Berkel; Hadil Abu Khalifeh; Mohammed Ghazal; Adel Elmaghraby; Ayman El-Baz
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

  2 in total

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