Literature DB >> 29782925

The developmental-genetics of canalization.

Benedikt Hallgrimsson1, Rebecca M Green2, David C Katz2, Jennifer L Fish3, Francois P Bernier4, Charles C Roseman5, Nathan M Young6, James M Cheverud7, Ralph S Marcucio8.   

Abstract

Canalization, or robustness to genetic or environmental perturbations, is fundamental to complex organisms. While there is strong evidence for canalization as an evolved property that varies among genotypes, the developmental and genetic mechanisms that produce this phenomenon are very poorly understood. For evolutionary biology, understanding how canalization arises is important because, by modulating the phenotypic variation that arises in response to genetic differences, canalization is a determinant of evolvability. For genetics of disease in humans and for economically important traits in agriculture, this subject is important because canalization is a potentially significant cause of missing heritability that confounds genomic prediction of phenotypes. We review the major lines of thought on the developmental-genetic basis for canalization. These fall into two groups. One proposes specific evolved molecular mechanisms while the other deals with robustness or canalization as a more general feature of development. These explanations for canalization are not mutually exclusive and they overlap in several ways. General explanations for canalization are more likely to involve emergent features of development than specific molecular mechanisms. Disentangling these explanations is also complicated by differences in perspectives between genetics and developmental biology. Understanding canalization at a mechanistic level will require conceptual and methodological approaches that integrate quantitative genetics and developmental biology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Canalization; Epistasis; Genotype-phenotype maps; Nonlinearity; Robustness

Mesh:

Year:  2018        PMID: 29782925      PMCID: PMC6251770          DOI: 10.1016/j.semcdb.2018.05.019

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  121 in total

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Authors:  Benedikt Hallgrímsson; Barra O Donnabháin; Deborah E Blom; Maria C Lozada; Katherine T Willmore
Journal:  Am J Phys Anthropol       Date:  2005-09       Impact factor: 2.868

2.  The brachymorph mouse and the developmental-genetic basis for canalization and morphological integration.

Authors:  Benedikt Hallgrímsson; Jevon J Y Brown; Alice F Ford-Hutchinson; H David Sheets; Miriam L Zelditch; Frank R Jirik
Journal:  Evol Dev       Date:  2006 Jan-Feb       Impact factor: 1.930

3.  Hsp90 canalizes developmental perturbation.

Authors:  Despina Samakovli; Aggeliki Thanou; Charalampos Valmas; Polydefkis Hatzopoulos
Journal:  J Exp Bot       Date:  2007       Impact factor: 6.992

4.  Plasticity, canalization, and developmental stability of the Drosophila wing: joint effects of mutations and developmental temperature.

Authors:  Vincent Debat; Allan Debelle; Ian Dworkin
Journal:  Evolution       Date:  2009-07-16       Impact factor: 3.694

Review 5.  Transition states and cell fate decisions in epigenetic landscapes.

Authors:  Naomi Moris; Cristina Pina; Alfonso Martinez Arias
Journal:  Nat Rev Genet       Date:  2016-09-12       Impact factor: 53.242

6.  The large scale structure and dynamics of gene control circuits: an ensemble approach.

Authors:  S Kauffman
Journal:  J Theor Biol       Date:  1974-03       Impact factor: 2.691

Review 7.  Evolution in health and medicine Sackler colloquium: Consanguinity, human evolution, and complex diseases.

Authors:  A H Bittles; M L Black
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-23       Impact factor: 11.205

8.  A Network Model to Describe the Terminal Differentiation of B Cells.

Authors:  Akram Méndez; Luis Mendoza
Journal:  PLoS Comput Biol       Date:  2016-01-11       Impact factor: 4.475

9.  NetLand: quantitative modeling and visualization of Waddington's epigenetic landscape using probabilistic potential.

Authors:  Jing Guo; Feng Lin; Xiaomeng Zhang; Vivek Tanavde; Jie Zheng
Journal:  Bioinformatics       Date:  2017-05-15       Impact factor: 6.937

10.  Network hubs buffer environmental variation in Saccharomyces cerevisiae.

Authors:  Sasha F Levy; Mark L Siegal
Journal:  PLoS Biol       Date:  2008-11-04       Impact factor: 8.029

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  16 in total

1.  A Registration and Deep Learning Approach to Automated Landmark Detection for Geometric Morphometrics.

Authors:  Jay Devine; Jose D Aponte; David C Katz; Wei Liu; Lucas D Lo Vercio; Nils D Forkert; Ralph Marcucio; Christopher J Percival; Benedikt Hallgrímsson
Journal:  Evol Biol       Date:  2020-07-09       Impact factor: 3.119

2.  The effect of automated landmark identification on morphometric analyses.

Authors:  Christopher J Percival; Jay Devine; Benjamin C Darwin; Wei Liu; Matthijs van Eede; R Mark Henkelman; Benedikt Hallgrimsson
Journal:  J Anat       Date:  2019-03-22       Impact factor: 2.610

3.  Relating multivariate shapes to genescapes using phenotype-biological process associations for craniofacial shape.

Authors:  Jose D Aponte; David C Katz; Daniela M Roth; Marta Vidal-García; Wei Liu; Fernando Andrade; Charles C Roseman; Steven A Murray; James Cheverud; Daniel Graf; Ralph S Marcucio; Benedikt Hallgrímsson
Journal:  Elife       Date:  2021-11-15       Impact factor: 8.140

4.  Variable paralog expression underlies phenotype variation.

Authors:  Raisa Bailon-Zambrano; Juliana Sucharov; Abigail Mumme-Monheit; Matthew Murry; Amanda Stenzel; Anthony T Pulvino; Jennyfer M Mitchell; Kathryn L Colborn; James T Nichols
Journal:  Elife       Date:  2022-09-22       Impact factor: 8.713

5.  Weak genetic signal for phenotypic integration implicates developmental processes as major regulators of trait covariation.

Authors:  Andrew J Conith; Sylvie A Hope; Brian H Chhouk; R Craig Albertson
Journal:  Mol Ecol       Date:  2020-12-06       Impact factor: 6.185

6.  Redundancy, Feedback, and Robustness in the Arabidopsis thaliana BZR/BEH Gene Family.

Authors:  Jennifer Lachowiec; G Alex Mason; Karla Schultz; Christine Queitsch
Journal:  Front Genet       Date:  2018-11-13       Impact factor: 4.599

7.  Mouse Skull Mean Shape and Shape Robustness Rely on Different Genetic Architectures and Different Loci.

Authors:  Ceferino Varón-González; Luisa F Pallares; Vincent Debat; Nicolas Navarro
Journal:  Front Genet       Date:  2019-02-12       Impact factor: 4.599

8.  Embryonic geometry underlies phenotypic variation in decanalized conditions.

Authors:  Anqi Huang; Jean-François Rupprecht; Timothy E Saunders
Journal:  Elife       Date:  2020-02-12       Impact factor: 8.140

9.  A model of developmental canalization, applied to human cranial form.

Authors:  Philipp Mitteroecker; Ekaterina Stansfield
Journal:  PLoS Comput Biol       Date:  2021-02-16       Impact factor: 4.475

10.  CLAVATA Signaling Ensures Reproductive Development in Plants across Thermal Environments.

Authors:  Daniel S Jones; Amala John; Kylie R VanDerMolen; Zachary L Nimchuk
Journal:  Curr Biol       Date:  2020-11-05       Impact factor: 10.834

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