Literature DB >> 29780197

TRAFIC: Fiber Tract Classification Using Deep Learning.

Prince D Ngattai Lam1, Gaetan Belhomme1, Jessica Ferrall1, Billie Patterson1, Martin Styner1, Juan C Prieto1.   

Abstract

We present TRAFIC, a fully automated tool for the labeling and classification of brain fiber tracts. TRAFIC classifies new fibers using a neural network trained using shape features computed from previously traced and manually corrected fiber tracts. It is independent from a DTI Atlas as it is applied to already traced fibers. This work is motivated by medical applications where the process of extracting fibers from a DTI atlas, or classifying fibers manually is time consuming and requires knowledge about brain anatomy. With this new approach we were able to classify traced fiber tracts obtaining encouraging results. In this report we will present in detail the methods used and the results achieved with our approach.

Entities:  

Keywords:  Classification; DTI; DWI; deep learning; diffusion; fibers; neural networks; tractography

Year:  2018        PMID: 29780197      PMCID: PMC5956534          DOI: 10.1117/12.2293931

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  7 in total

1.  The arcuate fasciculus and the disconnection theme in language and aphasia: history and current state.

Authors:  Marco Catani; Marsel Mesulam
Journal:  Cortex       Date:  2008-05-23       Impact factor: 4.027

2.  Unbiased diffeomorphic atlas construction for computational anatomy.

Authors:  S Joshi; Brad Davis; Matthieu Jomier; Guido Gerig
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

3.  Group analysis of DTI fiber tract statistics with application to neurodevelopment.

Authors:  Casey B Goodlett; P Thomas Fletcher; John H Gilmore; Guido Gerig
Journal:  Neuroimage       Date:  2008-11-14       Impact factor: 6.556

4.  Autotract: Automatic cleaning and tracking of fibers.

Authors:  Juan C Prieto; Jean Y Yang; François Budin; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

5.  Arcuate fasciculus asymmetry has a hand in language function but not handedness.

Authors:  Jane B Allendorfer; Kathleen A Hernando; Shyla Hossain; Rodolphe Nenert; Scott K Holland; Jerzy P Szaflarski
Journal:  Hum Brain Mapp       Date:  2016-05-04       Impact factor: 5.038

6.  UNC-Utah NA-MIC framework for DTI fiber tract analysis.

Authors:  Audrey R Verde; Francois Budin; Jean-Baptiste Berger; Aditya Gupta; Mahshid Farzinfar; Adrien Kaiser; Mihye Ahn; Hans Johnson; Joy Matsui; Heather C Hazlett; Anuja Sharma; Casey Goodlett; Yundi Shi; Sylvain Gouttard; Clement Vachet; Joseph Piven; Hongtu Zhu; Guido Gerig; Martin Styner
Journal:  Front Neuroinform       Date:  2014-01-09       Impact factor: 4.081

7.  DTIPrep: quality control of diffusion-weighted images.

Authors:  Ipek Oguz; Mahshid Farzinfar; Joy Matsui; Francois Budin; Zhexing Liu; Guido Gerig; Hans J Johnson; Martin Styner
Journal:  Front Neuroinform       Date:  2014-01-30       Impact factor: 4.081

  7 in total
  9 in total

1.  Deep white matter analysis: fast, consistent tractography segmentation across populations and dMRI acquisitions.

Authors:  Fan Zhang; Nico Hoffmann; Suheyla Cetin Karayumak; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  Deep white matter analysis (DeepWMA): Fast and consistent tractography segmentation.

Authors:  Fan Zhang; Suheyla Cetin Karayumak; Nico Hoffmann; Yogesh Rathi; Alexandra J Golby; Lauren J O'Donnell
Journal:  Med Image Anal       Date:  2020-06-24       Impact factor: 8.545

3.  CONTINUITY: CONnectivity Tool with INtegration of sUbcortical regions, regIstration and visualization of TractographY.

Authors:  Elodie Piot; Maria Bagonis; Juan C Prieto; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2022-04-04

4.  Exposure to prenatal maternal distress and infant white matter neurodevelopment.

Authors:  Catherine H Demers; Maria M Bagonis; Khalid Al-Ali; Sarah E Garcia; Martin A Styner; John H Gilmore; M Camille Hoffman; Benjamin L Hankin; Elysia Poggi Davis
Journal:  Dev Psychopathol       Date:  2021-12-07

Review 5.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

6.  Novel Deep Learning Network Analysis of Electrical Stimulation Mapping-Driven Diffusion MRI Tractography to Improve Preoperative Evaluation of Pediatric Epilepsy.

Authors:  Min-Hee Lee; Nolan O'Hara; Masaki Sonoda; Naoto Kuroda; Csaba Juhasz; Eishi Asano; Ming Dong; Jeong-Won Jeong
Journal:  IEEE Trans Biomed Eng       Date:  2020-03-02       Impact factor: 4.538

7.  Prediction of postoperative deficits using an improved diffusion-weighted imaging maximum a posteriori probability analysis in pediatric epilepsy surgery.

Authors:  Min-Hee Lee; Nolan B O'Hara; Yasuo Nakai; Aimee F Luat; Csaba Juhasz; Sandeep Sood; Eishi Asano; Jeong-Won Jeong
Journal:  J Neurosurg Pediatr       Date:  2019-02-22       Impact factor: 2.713

8.  Objective Detection of Eloquent Axonal Pathways to Minimize Postoperative Deficits in Pediatric Epilepsy Surgery using Diffusion Tractography and Convolutional Neural Networks.

Authors:  Haotian Xu; Ming Dong; Min-Hee Lee; Nolan OrHara; Eishi Asano; Jeong-Won Jeong
Journal:  IEEE Trans Med Imaging       Date:  2019-02-27       Impact factor: 11.037

9.  Diffusion Tensor Based White Matter Tract Atlases for Pediatric Populations.

Authors:  Sarah J Short; Dae Kun Jang; Rachel J Steiner; Rebecca L Stephens; Jessica B Girault; Martin Styner; John H Gilmore
Journal:  Front Neurosci       Date:  2022-03-23       Impact factor: 4.677

  9 in total

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