Literature DB >> 29779787

A Thermodynamic Funnel Drives Bacterial Lipopolysaccharide Transfer in the TLR4 Pathway.

Roland G Huber1, Nils A Berglund2, Vasileios Kargas3, Jan K Marzinek4, Daniel A Holdbrook1, Syma Khalid5, Thomas J Piggot6, Artur Schmidtchen7, Peter J Bond8.   

Abstract

The Gram-negative bacterial outer membrane contains lipopolysaccharide, which potently stimulates the mammalian innate immune response. This involves a relay of specialized complexes culminating in transfer of lipopolysaccharide from CD14 to Toll-like receptor 4 (TLR4) and its co-receptor MD-2 on the cell surface, leading to activation of downstream inflammatory responses. In this study we develop computational models to trace the TLR4 cascade in near-atomic detail. We demonstrate through rigorous thermodynamic calculations that lipopolysaccharide molecules traversing the receptor cascade fall into a thermodynamic funnel. An affinity gradient for lipopolysaccharide is revealed upon extraction from aggregates or realistic bacterial outer membrane models and transfer through CD14 to the terminal TLR4/MD-2 receptor-co-receptor complex. We subsequently assemble viable CD14/TLR4/MD-2 oligomers at the plasma membrane surface, and observe lipopolysaccharide exchange between CD14 and TLR4/MD-2. Collectively, this work helps to unravel the key structural determinants governing endotoxin recognition in the TLR4 innate immune pathway.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  OmpF porin; cluster of differentiation 14 (CD14); coarse-grained (CG) models; free-energy calculations; lipopolysaccharide (LPS); molecular dynamics (MD) simulations; myeloid differentiation factor 2 (MD-2); oligomerization; toll-like receptor 4 (TLR4)

Mesh:

Substances:

Year:  2018        PMID: 29779787     DOI: 10.1016/j.str.2018.04.007

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  13 in total

1.  Lipid A Mimetics Based on Unnatural Disaccharide Scaffold as Potent TLR4 Agonists for Prospective Immunotherapeutics and Adjuvants.

Authors:  Sebastian Strobl; Karin Hofbauer; Holger Heine; Alla Zamyatina
Journal:  Chemistry       Date:  2022-05-11       Impact factor: 5.020

Review 2.  Computational Modeling of Realistic Cell Membranes.

Authors:  Siewert J Marrink; Valentina Corradi; Paulo C T Souza; Helgi I Ingólfsson; D Peter Tieleman; Mark S P Sansom
Journal:  Chem Rev       Date:  2019-01-09       Impact factor: 72.087

3.  Thrombin-derived C-terminal fragments aggregate and scavenge bacteria and their proinflammatory products.

Authors:  Jitka Petrlova; Ganna Petruk; Roland G Huber; Eilish W McBurnie; Mariena J A van der Plas; Peter J Bond; Manoj Puthia; Artur Schmidtchen
Journal:  J Biol Chem       Date:  2020-02-07       Impact factor: 5.157

4.  Characterizing Membrane Association and Periplasmic Transfer of Bacterial Lipoproteins through Molecular Dynamics Simulations.

Authors:  Shanlin Rao; George T Bates; Callum R Matthews; Thomas D Newport; Owen N Vickery; Phillip J Stansfeld
Journal:  Structure       Date:  2020-02-12       Impact factor: 5.006

Review 5.  Recent Advances in Lipopolysaccharide Recognition Systems.

Authors:  Lalita Mazgaeen; Prajwal Gurung
Journal:  Int J Mol Sci       Date:  2020-01-07       Impact factor: 5.923

6.  Key residues in TLR4-MD2 tetramer formation identified by free energy simulations.

Authors:  Alireza Tafazzol; Yong Duan
Journal:  PLoS Comput Biol       Date:  2019-10-14       Impact factor: 4.475

7.  SARS-CoV-2 spike protein binds to bacterial lipopolysaccharide and boosts proinflammatory activity.

Authors:  Ganna Petruk; Manoj Puthia; Jitka Petrlova; Firdaus Samsudin; Ann-Charlotte Strömdahl; Samuel Cerps; Lena Uller; Sven Kjellström; Peter J Bond; And Artur Schmidtchen
Journal:  J Mol Cell Biol       Date:  2020-10-12       Impact factor: 6.216

8.  Epigallocatechin Gallate Can Protect Mice From Acute Stress Induced by LPS While Stabilizing Gut Microbes and Serum Metabolites Levels.

Authors:  Yong Ma; Gang Liu; Muyang Tang; Jun Fang; Hongmei Jiang
Journal:  Front Immunol       Date:  2021-04-01       Impact factor: 7.561

Review 9.  Increasing the Chemical Variety of Small-Molecule-Based TLR4 Modulators: An Overview.

Authors:  Alessio Romerio; Francesco Peri
Journal:  Front Immunol       Date:  2020-07-10       Impact factor: 7.561

10.  Structural basis for endotoxin neutralisation and anti-inflammatory activity of thrombin-derived C-terminal peptides.

Authors:  Rathi Saravanan; Daniel A Holdbrook; Jitka Petrlova; Shalini Singh; Nils A Berglund; Yeu Khai Choong; Sven Kjellström; Peter J Bond; Martin Malmsten; Artur Schmidtchen
Journal:  Nat Commun       Date:  2018-07-17       Impact factor: 14.919

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