Literature DB >> 29779657

Collection, Culturing, and Genome Analyses of Tropical Marine Filamentous Benthic Cyanobacteria.

Nathan A Moss1, Tiago Leao1, Evgenia Glukhov1, Lena Gerwick1, William H Gerwick2.   

Abstract

Decreasing sequencing costs has sparked widespread investigation of the use of microbial genomics to accelerate the discovery and development of natural products for therapeutic uses. Tropical marine filamentous cyanobacteria have historically produced many structurally novel natural products, and therefore present an excellent opportunity for the systematic discovery of new metabolites via the information derived from genomics and molecular genetics. Adequate knowledge transfer and institutional know-how are important to maintain the capability for studying filamentous cyanobacteria due to their unusual microbial morphology and characteristics. Here, we describe workflows, procedures, and commentary on sample collection, cultivation, genomic DNA generation, bioinformatics tools, and biosynthetic pathway analysis concerning filamentous cyanobacteria.
© 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Assembly; Culturing; Cyanobacteria; DNA extraction; Expression; Field collection; Filamentous; Genome assembly; Genome mining; Genomics

Mesh:

Substances:

Year:  2018        PMID: 29779657     DOI: 10.1016/bs.mie.2018.02.014

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  6 in total

1.  Pagoamide A, a Cyclic Depsipeptide Isolated from a Cultured Marine Chlorophyte, Derbesia sp., Using MS/MS-Based Molecular Networking.

Authors:  Yueying Li; Hao-Bing Yu; Yi Zhang; Tiago Leao; Evgenia Glukhov; Marsha L Pierce; Chen Zhang; Hyunwoo Kim; Huanru Henry Mao; Fang Fang; Garrison W Cottrell; Thomas F Murray; Lena Gerwick; Huashi Guan; William H Gerwick
Journal:  J Nat Prod       Date:  2020-01-09       Impact factor: 4.050

2.  Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouillonii.

Authors:  Christopher A Leber; C Benjamin Naman; Lena Keller; Jehad Almaliti; Eduardo J E Caro-Diaz; Evgenia Glukhov; Valsamma Joseph; T P Sajeevan; Andres Joshua Reyes; Jason S Biggs; Te Li; Ye Yuan; Shan He; Xiaojun Yan; William H Gerwick
Journal:  Mar Drugs       Date:  2020-10-14       Impact factor: 5.118

Review 3.  The Chemistry, Biochemistry and Pharmacology of Marine Natural Products from Leptolyngbya, a Chemically Endowed Genus of Cyanobacteria.

Authors:  Yueying Li; C Benjamin Naman; Kelsey L Alexander; Huashi Guan; William H Gerwick
Journal:  Mar Drugs       Date:  2020-10-06       Impact factor: 5.118

4.  A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria.

Authors:  Tiago Leão; Mingxun Wang; Nathan Moss; Ricardo da Silva; Jon Sanders; Sergey Nurk; Alexey Gurevich; Gregory Humphrey; Raphael Reher; Qiyun Zhu; Pedro Belda-Ferre; Evgenia Glukhov; Syrena Whitner; Kelsey L Alexander; Robert Rex; Pavel Pevzner; Pieter C Dorrestein; Rob Knight; Nuno Bandeira; William H Gerwick; Lena Gerwick
Journal:  Mar Drugs       Date:  2021-01-06       Impact factor: 5.118

Review 5.  Marine Biocompounds for Neuroprotection-A Review.

Authors:  Adrian Florian Bălașa; Cristina Chircov; Alexandru Mihai Grumezescu
Journal:  Mar Drugs       Date:  2020-05-31       Impact factor: 5.118

6.  Metabolomic Characterization of a cf. Neolyngbya Cyanobacterium from the South China Sea Reveals Wenchangamide A, a Lipopeptide with In Vitro Apoptotic Potential in Colon Cancer Cells.

Authors:  Lijian Ding; Rinat Bar-Shalom; Dikla Aharonovich; Naoaki Kurisawa; Gaurav Patial; Shuang Li; Shan He; Xiaojun Yan; Arihiro Iwasaki; Kiyotake Suenaga; Chengcong Zhu; Haixi Luo; Fuli Tian; Fuad Fares; C Benjamin Naman; Tal Luzzatto-Knaan
Journal:  Mar Drugs       Date:  2021-07-16       Impact factor: 5.118

  6 in total

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