Literature DB >> 29775224

Circular RNAs are differentially expressed in liver ischemia/reperfusion injury model.

Zhiqiang Ye1, Qinglei Kong1, Jianhua Han1, Jingyi Deng1, Miaolue Wu1, Hong Deng2,3.   

Abstract

Liver ischemia/reperfusion (I/R) injury has high mortality due to the intense inflammatory process occurs in the liver. However, the pathological mechanism underlying I/R injury is still not clear. Recent works showed that circular RNAs play critical roles in many human diseases. In this study, the occurrence of liver I/R injury was validated by an analysis of the blood samples and hematoxylin-eosin (HE) staining of liver tissues. Total RNA was purified and followed by RNA-seq in the purpose of screening the circRNAs in significant differentially expression, which were validated by quantitative PCR. GO and KEGG analysis were performed to determine the function of these differentially expressed circular RNAs. The circular structure of the circRNA was validated with gel electrophoresis and RNase R treatment. We found that some circular RNAs were differentially expressed in Liver I/R mouse models through bioinformatics analysis. These circular RNAs play roles in biological process, cellular component, and molecular function through GO analysis. Meanwhile, Hippo signaling pathway was found to be correlated with circular RNAs function in I/R models by KEGG analysis. To further validate bioinformatics data, two up-regulated and three down-regulated circular RNAs were confirmed in I/R models. The circularity of these differentially expressed circular RNAs was validated through gel electrophoresis and RNase R treatment. In summary, this work provides new insights into the mechanism underlying pathogenesis of liver I/R injury, providing new and potentially efficient targets against I/R injury.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  bioinformatics analysis; circular RNA; circularity; liver ischemia/reperfusion injury

Mesh:

Substances:

Year:  2018        PMID: 29775224     DOI: 10.1002/jcb.27047

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  5 in total

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Authors:  Yan Liu; Xiao Ke; Wenyu Guo; Xiaoqing Wang; Changnong Peng; Zhiyong Liao; Qiang Liu; Yingling Zhou
Journal:  Arch Med Sci       Date:  2019-08-07       Impact factor: 3.707

2.  Evaluation of expression of common genes in the intestine and peripheral blood mononuclear cells (PBMC) associated with celiac disease.

Authors:  Ensieh Khalkhal; Fatemeh Nobakht; Mohammad Hossain Haidari; Zahra Razaghi; Mahsa Ghasemzad; Melika Sheikhan; Mohammad Rostami Nejad
Journal:  Gastroenterol Hepatol Bed Bench       Date:  2020

3.  Identification of circular RNA biomarkers for Pien Tze Huang treatment of CCl4‑induced liver fibrosis using RNA‑sequencing.

Authors:  Ting Wang; Jinhang Zhu; Longhui Gao; Muyun Wei; Di Zhang; Luan Chen; Hao Wu; Jingsong Ma; Lixing Li; Na Zhang; Yanjing Wang; Qinghe Xing; Lin He; Fei Hong; Shengying Qin
Journal:  Mol Med Rep       Date:  2022-08-25       Impact factor: 3.423

4.  Celiac disease microarray analysis based on System Biology Approach.

Authors:  Mostafa Rezaei Tavirani; Davood Bashash; Fatemeh Tajik Rostami; Sina Rezaei Tavirani; Abdolrahim Nikzamir; Majid Rezaei Tavirani; Mohammad Hossain Haidary
Journal:  Gastroenterol Hepatol Bed Bench       Date:  2018

5.  Microarray Analysis For Expression Profiles of lncRNAs and circRNAs in Rat Liver after Brain-Dead Donor Liver Transplantation.

Authors:  Sanyang Chen; Hongbo Fang; Jie Li; Jihua Shi; Jiakai Zhang; Peihao Wen; Zhihui Wang; Han Yang; Shengli Cao; Huapeng Zhang; Hongwei Tang; Wenzhi Guo; Shuijun Zhang
Journal:  Biomed Res Int       Date:  2019-11-07       Impact factor: 3.411

  5 in total

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