Literature DB >> 29770256

Network Inference via the Time-Varying Graphical Lasso.

David Hallac1, Youngsuk Park1, Stephen Boyd1, Jure Leskovec1.   

Abstract

Many important problems can be modeled as a system of interconnected entities, where each entity is recording time-dependent observations or measurements. In order to spot trends, detect anomalies, and interpret the temporal dynamics of such data, it is essential to understand the relationships between the different entities and how these relationships evolve over time. In this paper, we introduce the time-varying graphical lasso (TVGL), a method of inferring time-varying networks from raw time series data. We cast the problem in terms of estimating a sparse time-varying inverse covariance matrix, which reveals a dynamic network of interdependencies between the entities. Since dynamic network inference is a computationally expensive task, we derive a scalable message-passing algorithm based on the Alternating Direction Method of Multipliers (ADMM) to solve this problem in an efficient way. We also discuss several extensions, including a streaming algorithm to update the model and incorporate new observations in real time. Finally, we evaluate our TVGL algorithm on both real and synthetic datasets, obtaining interpretable results and outperforming state-of-the-art baselines in terms of both accuracy and scalability.

Entities:  

Year:  2017        PMID: 29770256      PMCID: PMC5951186          DOI: 10.1145/3097983.3098037

Source DB:  PubMed          Journal:  KDD        ISSN: 2154-817X


  9 in total

1.  Network Lasso: Clustering and Optimization in Large Graphs.

Authors:  David Hallac; Jure Leskovec; Stephen Boyd
Journal:  KDD       Date:  2015-08

2.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

3.  Recovering time-varying networks of dependencies in social and biological studies.

Authors:  Amr Ahmed; Eric P Xing
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

4.  The joint graphical lasso for inverse covariance estimation across multiple classes.

Authors:  Patrick Danaher; Pei Wang; Daniela M Witten
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2014-03       Impact factor: 4.488

5.  Covariance-regularized regression and classification for high-dimensional problems.

Authors:  Daniela M Witten; Robert Tibshirani
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2009-02-20       Impact factor: 4.488

6.  Node-Based Learning of Multiple Gaussian Graphical Models.

Authors:  Karthik Mohan; Palma London; Maryam Fazel; Daniela Witten; Su-In Lee
Journal:  J Mach Learn Res       Date:  2014-01-01       Impact factor: 3.654

7.  SnapVX: A Network-Based Convex Optimization Solver.

Authors:  David Hallac; Christopher Wong; Steven Diamond; Abhijit Sharang; Rok Sosič; Stephen Boyd; Jure Leskovec
Journal:  J Mach Learn Res       Date:  2017       Impact factor: 3.654

8.  Estimating time-varying brain connectivity networks from functional MRI time series.

Authors:  Ricardo Pio Monti; Peter Hellyer; David Sharp; Robert Leech; Christoforos Anagnostopoulos; Giovanni Montana
Journal:  Neuroimage       Date:  2014-08-06       Impact factor: 6.556

9.  Inferring slowly-changing dynamic gene-regulatory networks.

Authors:  Ernst C Wit; Antonino Abbruzzo
Journal:  BMC Bioinformatics       Date:  2015-04-17       Impact factor: 3.169

  9 in total
  5 in total

1.  Analyzing spatial mobility patterns with time-varying graphical lasso: Application to COVID-19 spread.

Authors:  Iván L Degano; Pablo A Lotito
Journal:  Trans GIS       Date:  2021-07-12

2.  Capturing Dynamic Connectivity from Resting State fMRI using Time-Varying Graphical Lasso.

Authors:  Biao Cai; Gemeng Zhang; Aiying Zhang; Julia M Stephen; Tony W Wilson; Vince D Calhoun; Yuping Wang
Journal:  IEEE Trans Biomed Eng       Date:  2018-11-09       Impact factor: 4.538

3.  Efficient Proximal Gradient Algorithms for Joint Graphical Lasso.

Authors:  Jie Chen; Ryosuke Shimmura; Joe Suzuki
Journal:  Entropy (Basel)       Date:  2021-12-02       Impact factor: 2.524

4.  Automated, high-dimensional evaluation of physiological aging and resilience in outbred mice.

Authors:  Zhenghao Chen; Anil Raj; G V Prateek; Andrea Di Francesco; Justin Liu; Brice E Keyes; Ganesh Kolumam; Vladimir Jojic; Adam Freund
Journal:  Elife       Date:  2022-04-11       Impact factor: 8.713

5.  Where Do We Stand in Regularization for Life Science Studies?

Authors:  Veronica Tozzo; Chloé-Agathe Azencott; Samuele Fiorini; Emanuele Fava; Andrea Trucco; Annalisa Barla
Journal:  J Comput Biol       Date:  2021-04-29       Impact factor: 1.479

  5 in total

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