| Literature DB >> 29765746 |
Abstract
The asymmetric unit of the title compound, [Ag(C24H46N6O2)](NO3)2 [C24H46N6O2 is (5,16-dimethyl-2,6,13,17-tetra-aza-tri-cyclo-[16.4.0.07,12]docosane-2,13-di-yl)diacetamide, L], consists of one independent half of the [Ag(C24H46N6O2)]2+ cation and one nitrate anion. The Ag atom, lying on an inversion centre, has a square-planar geometry and the complex adopts a stable trans-III conformation. Inter-estingly, the two O atoms of the pendant acetamide groups are not coordinated to the AgII ion. The longer distance of 2.227 (2) Å for Ag-N(tertiary) compared to 2.134 (2) Å for Ag-N(secondary) may be due to the effects of the attached acetamide group on the tertiary N atom. Two nitrate anions are very weakly bound to the AgII ion in the axial sites and are further connected to the ligand of the cation by N-H⋯O hydrogen bonds. The crystal packing is stabilized by hydrogen-bonding inter-actions among the N-H donor groups of the macrocycle and its actetamide substituents, and the O atoms of the nitrate anions and of an acetamide group as the acceptor atoms.Entities:
Keywords: nitrate ion; crystal structure; hydrogen bonding; macrocycle; silver(II) complex; synchrotron radiation; trans-III conformation
Year: 2018 PMID: 29765746 PMCID: PMC5946968 DOI: 10.1107/S2056989018003560
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A perspective view (50% probability) of complex (I). The primed atoms are related by the symmetry operation (−x + 1, −y + 1, −z + 1). Hydrogen bonds are drawn as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O1 | 1.00 | 2.59 | 3.214 (4) | 121 |
| N2—H2⋯O3 | 1.00 | 1.93 | 2.925 (4) | 172 |
| N3—H3 | 0.88 | 2.03 | 2.913 (4) | 177 |
| N3—H3 | 0.88 | 2.06 | 2.930 (4) | 168 |
| N3—H3 | 0.88 | 2.59 | 3.281 (4) | 136 |
Symmetry codes: (i) ; (ii) .
Figure 2The crystal packing in complex (I), viewed along the b-axis direction. Dashed lines represent N—H⋯O hydrogen-bonding interactions.
Experimental details
| Crystal data | |
| Chemical formula | [Ag(C24H46N6O2)](NO3)2 |
|
| 682.56 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 173 |
|
| 8.3460 (17), 9.2874 (19), 10.171 (2) |
| α, β, γ (°) | 104.32 (3), 90.28 (3), 109.60 (3) |
|
| 716.3 (3) |
|
| 1 |
| Radiation type | Synchrotron, λ = 0.610 Å |
| μ (mm−1) | 0.51 |
| Crystal size (mm) | 0.02 × 0.02 × 0.01 |
| Data collection | |
| Diffractometer | ADSC Q210 CCD area detector |
| Absorption correction | Empirical (using intensity measurements) ( |
|
| 0.937, 1.000 |
| No. of measured, independent and observed [ | 7431, 3750, 3418 |
|
| 0.034 |
| (sin θ/λ)max (Å−1) | 0.693 |
| Refinement | |
|
| 0.043, 0.115, 1.05 |
| No. of reflections | 3750 |
| No. of parameters | 189 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.71, −2.17 |
Computer programs: PAL BL2D-SMDC Program (Shin et al., 2016 ▸), HKL3000sm (Otwinowski & Minor, 1997 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), DIAMOND 4 (Putz & Brandenburg, 2014 ▸) and publCIF (Westrip, 2010 ▸).
| [Ag(C24H46N6O2)](NO3)2 | |
| Triclinic, | |
| Synchrotron radiation, λ = 0.610 Å | |
| Cell parameters from 46429 reflections | |
| θ = 0.4–33.7° | |
| α = 104.32 (3)° | µ = 0.51 mm−1 |
| β = 90.28 (3)° | |
| γ = 109.60 (3)° | Block, dark orange |
| 0.02 × 0.02 × 0.01 mm |
| ADSC Q210 CCD area detector diffractometer | 3418 reflections with |
| Radiation source: PLSII 2D bending magnet | |
| ω scan | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: empirical (using intensity measurements) ( | |
| 7431 measured reflections | |
| 3750 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.71 e Å−3 | |
| 3750 reflections | Δρmin = −2.17 e Å−3 |
| 189 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.065 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ag1 | 0.500000 | 0.500000 | 0.500000 | 0.01559 (13) | |
| O1 | 0.2273 (3) | 0.5401 (3) | 0.0700 (3) | 0.0332 (6) | |
| N1 | 0.3945 (3) | 0.4502 (3) | 0.2855 (2) | 0.0138 (4) | |
| N2 | 0.3842 (3) | 0.2496 (3) | 0.4657 (2) | 0.0141 (4) | |
| H2 | 0.480698 | 0.207953 | 0.460293 | 0.017* | |
| N3 | −0.0231 (4) | 0.4445 (4) | 0.1558 (3) | 0.0287 (6) | |
| H3A | −0.082643 | 0.448023 | 0.085766 | 0.034* | |
| H3B | −0.075649 | 0.410273 | 0.222782 | 0.034* | |
| C1 | 0.5320 (4) | 0.5522 (4) | 0.2206 (3) | 0.0190 (6) | |
| H1A | 0.491733 | 0.531956 | 0.123804 | 0.023* | |
| H1AB | 0.633336 | 0.519689 | 0.222357 | 0.023* | |
| C2 | 0.2334 (4) | 0.4871 (4) | 0.2920 (3) | 0.0200 (6) | |
| H2A | 0.258145 | 0.591883 | 0.357970 | 0.024* | |
| H2AB | 0.149558 | 0.408176 | 0.330418 | 0.024* | |
| C3 | 0.1459 (4) | 0.4909 (4) | 0.1604 (3) | 0.0223 (6) | |
| C4 | 0.3680 (4) | 0.2774 (3) | 0.2288 (3) | 0.0167 (5) | |
| H4 | 0.483624 | 0.268837 | 0.217142 | 0.020* | |
| C5 | 0.2651 (4) | 0.2038 (4) | 0.0888 (3) | 0.0218 (6) | |
| H5A | 0.148066 | 0.206799 | 0.096639 | 0.026* | |
| H5B | 0.319617 | 0.266303 | 0.024804 | 0.026* | |
| C6 | 0.2561 (5) | 0.0326 (4) | 0.0329 (3) | 0.0296 (7) | |
| H6A | 0.186557 | −0.013650 | −0.056301 | 0.035* | |
| H6B | 0.372603 | 0.030416 | 0.018612 | 0.035* | |
| C7 | 0.1776 (5) | −0.0665 (4) | 0.1307 (3) | 0.0318 (8) | |
| H7A | 0.179869 | −0.175056 | 0.095173 | 0.038* | |
| H7B | 0.056864 | −0.074055 | 0.137454 | 0.038* | |
| C8 | 0.2763 (5) | 0.0082 (4) | 0.2717 (3) | 0.0249 (6) | |
| H8A | 0.393756 | 0.005616 | 0.265973 | 0.030* | |
| H8B | 0.220186 | −0.054797 | 0.334862 | 0.030* | |
| C9 | 0.2852 (4) | 0.1794 (3) | 0.3284 (3) | 0.0148 (5) | |
| H9 | 0.166364 | 0.180502 | 0.337656 | 0.018* | |
| C10 | 0.2906 (4) | 0.2024 (3) | 0.5819 (3) | 0.0182 (5) | |
| H10 | 0.252172 | 0.084275 | 0.560973 | 0.022* | |
| C11 | 0.4128 (4) | 0.2696 (4) | 0.7127 (3) | 0.0207 (6) | |
| H11A | 0.357944 | 0.213455 | 0.780635 | 0.025* | |
| H11B | 0.517100 | 0.243381 | 0.692138 | 0.025* | |
| C12 | 0.1312 (4) | 0.2481 (4) | 0.5968 (3) | 0.0269 (7) | |
| H12A | 0.159371 | 0.357672 | 0.591454 | 0.040* | |
| H12B | 0.088753 | 0.238874 | 0.685098 | 0.040* | |
| H12C | 0.042823 | 0.177157 | 0.523376 | 0.040* | |
| O1N | 0.7629 (4) | 0.3507 (3) | 0.3690 (3) | 0.0343 (6) | |
| O2N | 0.8673 (3) | 0.1611 (3) | 0.3122 (3) | 0.0338 (6) | |
| O3N | 0.6869 (3) | 0.1576 (3) | 0.4643 (3) | 0.0328 (6) | |
| N1N | 0.7737 (3) | 0.2225 (3) | 0.3815 (3) | 0.0237 (5) |
| Ag1 | 0.01841 (18) | 0.01836 (19) | 0.00929 (16) | 0.00500 (12) | −0.00143 (10) | 0.00443 (10) |
| O1 | 0.0323 (13) | 0.0502 (16) | 0.0254 (12) | 0.0174 (12) | 0.0029 (10) | 0.0203 (11) |
| N1 | 0.0189 (11) | 0.0161 (11) | 0.0080 (9) | 0.0073 (9) | −0.0004 (8) | 0.0043 (8) |
| N2 | 0.0177 (11) | 0.0149 (11) | 0.0100 (10) | 0.0054 (9) | 0.0004 (8) | 0.0042 (8) |
| N3 | 0.0271 (14) | 0.0434 (18) | 0.0213 (13) | 0.0161 (13) | 0.0001 (11) | 0.0132 (12) |
| C1 | 0.0216 (14) | 0.0232 (14) | 0.0102 (11) | 0.0044 (11) | 0.0030 (10) | 0.0058 (10) |
| C2 | 0.0248 (15) | 0.0243 (15) | 0.0128 (12) | 0.0118 (12) | −0.0022 (10) | 0.0038 (10) |
| C3 | 0.0306 (16) | 0.0216 (15) | 0.0172 (13) | 0.0127 (13) | −0.0030 (11) | 0.0045 (11) |
| C4 | 0.0200 (13) | 0.0201 (14) | 0.0084 (11) | 0.0068 (11) | −0.0012 (9) | 0.0013 (9) |
| C5 | 0.0291 (16) | 0.0251 (15) | 0.0103 (12) | 0.0110 (13) | −0.0036 (10) | 0.0007 (10) |
| C6 | 0.0408 (19) | 0.0286 (17) | 0.0162 (14) | 0.0164 (15) | −0.0059 (13) | −0.0056 (12) |
| C7 | 0.044 (2) | 0.0203 (16) | 0.0237 (16) | 0.0103 (15) | −0.0127 (14) | −0.0049 (12) |
| C8 | 0.0338 (17) | 0.0178 (14) | 0.0194 (14) | 0.0074 (13) | −0.0060 (12) | 0.0006 (11) |
| C9 | 0.0177 (13) | 0.0165 (13) | 0.0112 (11) | 0.0079 (10) | −0.0011 (9) | 0.0028 (9) |
| C10 | 0.0211 (14) | 0.0175 (13) | 0.0153 (12) | 0.0036 (11) | 0.0023 (10) | 0.0073 (10) |
| C11 | 0.0275 (15) | 0.0233 (15) | 0.0136 (12) | 0.0078 (12) | 0.0017 (11) | 0.0106 (11) |
| C12 | 0.0206 (15) | 0.0370 (19) | 0.0193 (14) | 0.0072 (13) | 0.0040 (11) | 0.0046 (13) |
| O1N | 0.0386 (15) | 0.0353 (14) | 0.0385 (14) | 0.0187 (12) | 0.0114 (11) | 0.0183 (11) |
| O2N | 0.0326 (14) | 0.0448 (16) | 0.0263 (12) | 0.0211 (12) | 0.0051 (10) | 0.0027 (11) |
| O3N | 0.0376 (14) | 0.0359 (14) | 0.0388 (14) | 0.0232 (12) | 0.0152 (11) | 0.0195 (11) |
| N1N | 0.0222 (13) | 0.0297 (15) | 0.0203 (12) | 0.0137 (11) | −0.0037 (10) | 0.0021 (10) |
| Ag1—N2i | 2.134 (2) | C5—H5A | 0.9900 |
| Ag1—N2 | 2.134 (2) | C5—H5B | 0.9900 |
| Ag1—N1 | 2.227 (2) | C6—C7 | 1.523 (5) |
| Ag1—N1i | 2.227 (2) | C6—H6A | 0.9900 |
| O1—C3 | 1.234 (4) | C6—H6B | 0.9900 |
| N1—C2 | 1.493 (4) | C7—C8 | 1.527 (4) |
| N1—C1 | 1.496 (4) | C7—H7A | 0.9900 |
| N1—C4 | 1.504 (4) | C7—H7B | 0.9900 |
| N2—C9 | 1.494 (3) | C8—C9 | 1.527 (4) |
| N2—C10 | 1.495 (3) | C8—H8A | 0.9900 |
| N2—H2 | 1.0000 | C8—H8B | 0.9900 |
| N3—C3 | 1.326 (4) | C9—H9 | 1.0000 |
| N3—H3A | 0.8800 | C10—C12 | 1.524 (4) |
| N3—H3B | 0.8800 | C10—C11 | 1.532 (4) |
| C1—C11i | 1.530 (4) | C10—H10 | 1.0000 |
| C1—H1A | 0.9900 | C11—H11A | 0.9900 |
| C1—H1AB | 0.9900 | C11—H11B | 0.9900 |
| C2—C3 | 1.535 (4) | C12—H12A | 0.9800 |
| C2—H2A | 0.9900 | C12—H12B | 0.9800 |
| C2—H2AB | 0.9900 | C12—H12C | 0.9800 |
| C4—C5 | 1.531 (4) | O1N—N1N | 1.261 (4) |
| C4—C9 | 1.540 (4) | O2N—N1N | 1.240 (4) |
| C4—H4 | 1.0000 | O3N—N1N | 1.249 (4) |
| C5—C6 | 1.526 (5) | ||
| N2i—Ag1—N2 | 180.0 | H5A—C5—H5B | 108.1 |
| N2i—Ag1—N1 | 96.57 (9) | C7—C6—C5 | 111.1 (3) |
| N2—Ag1—N1 | 83.43 (9) | C7—C6—H6A | 109.4 |
| N2i—Ag1—N1i | 83.43 (9) | C5—C6—H6A | 109.4 |
| N2—Ag1—N1i | 96.57 (9) | C7—C6—H6B | 109.4 |
| N1—Ag1—N1i | 180.0 (2) | C5—C6—H6B | 109.4 |
| C2—N1—C1 | 114.7 (2) | H6A—C6—H6B | 108.0 |
| C2—N1—C4 | 114.1 (2) | C6—C7—C8 | 110.4 (3) |
| C1—N1—C4 | 111.6 (2) | C6—C7—H7A | 109.6 |
| C2—N1—Ag1 | 106.66 (16) | C8—C7—H7A | 109.6 |
| C1—N1—Ag1 | 105.59 (17) | C6—C7—H7B | 109.6 |
| C4—N1—Ag1 | 102.92 (15) | C8—C7—H7B | 109.6 |
| C9—N2—C10 | 115.8 (2) | H7A—C7—H7B | 108.1 |
| C9—N2—Ag1 | 109.76 (16) | C7—C8—C9 | 111.9 (3) |
| C10—N2—Ag1 | 113.18 (17) | C7—C8—H8A | 109.2 |
| C9—N2—H2 | 105.7 | C9—C8—H8A | 109.2 |
| C10—N2—H2 | 105.7 | C7—C8—H8B | 109.2 |
| Ag1—N2—H2 | 105.7 | C9—C8—H8B | 109.2 |
| C3—N3—H3A | 120.0 | H8A—C8—H8B | 107.9 |
| C3—N3—H3B | 120.0 | N2—C9—C8 | 110.5 (2) |
| H3A—N3—H3B | 120.0 | N2—C9—C4 | 110.5 (2) |
| N1—C1—C11i | 115.2 (2) | C8—C9—C4 | 109.6 (2) |
| N1—C1—H1A | 108.5 | N2—C9—H9 | 108.7 |
| C11i—C1—H1A | 108.5 | C8—C9—H9 | 108.7 |
| N1—C1—H1AB | 108.5 | C4—C9—H9 | 108.7 |
| C11i—C1—H1AB | 108.5 | N2—C10—C12 | 111.9 (2) |
| H1A—C1—H1AB | 107.5 | N2—C10—C11 | 109.9 (2) |
| N1—C2—C3 | 119.0 (2) | C12—C10—C11 | 113.0 (2) |
| N1—C2—H2A | 107.6 | N2—C10—H10 | 107.3 |
| C3—C2—H2A | 107.6 | C12—C10—H10 | 107.3 |
| N1—C2—H2AB | 107.6 | C11—C10—H10 | 107.3 |
| C3—C2—H2AB | 107.6 | C1i—C11—C10 | 117.6 (2) |
| H2A—C2—H2AB | 107.0 | C1i—C11—H11A | 107.9 |
| O1—C3—N3 | 123.2 (3) | C10—C11—H11A | 107.9 |
| O1—C3—C2 | 122.4 (3) | C1i—C11—H11B | 107.9 |
| N3—C3—C2 | 114.3 (3) | C10—C11—H11B | 107.9 |
| N1—C4—C5 | 113.8 (2) | H11A—C11—H11B | 107.2 |
| N1—C4—C9 | 111.8 (2) | C10—C12—H12A | 109.5 |
| C5—C4—C9 | 109.8 (2) | C10—C12—H12B | 109.5 |
| N1—C4—H4 | 107.0 | H12A—C12—H12B | 109.5 |
| C5—C4—H4 | 107.0 | C10—C12—H12C | 109.5 |
| C9—C4—H4 | 107.0 | H12A—C12—H12C | 109.5 |
| C6—C5—C4 | 110.7 (3) | H12B—C12—H12C | 109.5 |
| C6—C5—H5A | 109.5 | O2N—N1N—O3N | 120.6 (3) |
| C4—C5—H5A | 109.5 | O2N—N1N—O1N | 120.7 (3) |
| C6—C5—H5B | 109.5 | O3N—N1N—O1N | 118.6 (3) |
| C4—C5—H5B | 109.5 | ||
| C2—N1—C1—C11i | 57.5 (3) | C6—C7—C8—C9 | 56.2 (4) |
| C4—N1—C1—C11i | −170.8 (2) | C10—N2—C9—C8 | −78.2 (3) |
| Ag1—N1—C1—C11i | −59.7 (3) | Ag1—N2—C9—C8 | 152.1 (2) |
| C1—N1—C2—C3 | 53.5 (3) | C10—N2—C9—C4 | 160.3 (2) |
| C4—N1—C2—C3 | −77.0 (3) | Ag1—N2—C9—C4 | 30.6 (3) |
| Ag1—N1—C2—C3 | 170.0 (2) | C7—C8—C9—N2 | −179.4 (3) |
| N1—C2—C3—O1 | −35.8 (4) | C7—C8—C9—C4 | −57.4 (4) |
| N1—C2—C3—N3 | 147.4 (3) | N1—C4—C9—N2 | −52.8 (3) |
| C2—N1—C4—C5 | 54.2 (3) | C5—C4—C9—N2 | 179.9 (2) |
| C1—N1—C4—C5 | −77.8 (3) | N1—C4—C9—C8 | −174.8 (2) |
| Ag1—N1—C4—C5 | 169.4 (2) | C5—C4—C9—C8 | 57.9 (3) |
| C2—N1—C4—C9 | −70.9 (3) | C9—N2—C10—C12 | −59.3 (3) |
| C1—N1—C4—C9 | 157.1 (2) | Ag1—N2—C10—C12 | 68.7 (3) |
| Ag1—N1—C4—C9 | 44.3 (2) | C9—N2—C10—C11 | 174.3 (2) |
| N1—C4—C5—C6 | 175.4 (3) | Ag1—N2—C10—C11 | −57.7 (3) |
| C9—C4—C5—C6 | −58.5 (3) | N2—C10—C11—C1i | 73.2 (3) |
| C4—C5—C6—C7 | 57.5 (4) | C12—C10—C11—C1i | −52.5 (3) |
| C5—C6—C7—C8 | −55.6 (4) |
| H··· | ||||
| N2—H2···O1 | 1.00 | 2.59 | 3.214 (4) | 121 |
| N2—H2···O3 | 1.00 | 1.93 | 2.925 (4) | 172 |
| N3—H3 | 0.88 | 2.03 | 2.913 (4) | 177 |
| N3—H3 | 0.88 | 2.06 | 2.930 (4) | 168 |
| N3—H3 | 0.88 | 2.59 | 3.281 (4) | 136 |