| Literature DB >> 29765738 |
Ana Paula Lopes de Melo1, Leandro Bresolin1, Bianca Barreto Martins1, Vanessa Carratu Gervini1, Adriano Bof de Oliveira2.
Abstract
The reaction in methanol of CuII acetate monohydrate with 5-fluoro-isatin 3-oxime deprotonated with KOH in a 1:2 molar ratio and recrystallization from pyridine yielded the title compound, [Cu(C8H4FN2O2)2(C5H5N)2]. In the centrosymmetric complex, the anionic form of the isatin oxime acts as a κ2N,O donor, building five-membered metallarings. The CuII cation is sixfold coordinated in a slightly distorted octa-hedral environment by two trans, equatorial, anionic isatin derivatives and two trans pyridine ligands in axial positions. The complexes are linked by hydrogen bonding into a three-dimensional network, which is also stabilized by π-π stacking inter-actions [centroid-to-centroid distance = 3.7352 (9) Å] and C-H⋯π contacts. The Hirshfeld surface analysis indicates that the major contributions for the crystal packing are H⋯H (31.80%), H⋯C (24.30%), H⋯O (15.20%) and H⋯F (10.80%). This work is the second report in the literature of a crystal structure of a coordination compound with isatin 3-oxime ligands (coordination chemistry).Entities:
Keywords: 5-fluoroisatin 3-oxime copper complex; Hirshfeld surface analysis; crystal structure
Year: 2018 PMID: 29765738 PMCID: PMC5946960 DOI: 10.1107/S2056989018003365
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling and displacement ellipsoids drawn at the 40% probability level. [Symmetry code: (i) −x + , −y + , −z + 1.]
Figure 2The intramolecular C—H⋯O hydrogen interactions of the title compound (dashed lines) forming a ring of S(5) graph-set motif.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N3/C9–C13 ring
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C9—H5⋯O1i | 0.95 | 2.54 | 3.1424 (18) | 121 |
| C12—H8⋯F1ii | 0.95 | 2.49 | 3.287 (2) | 142 |
| C13—H9⋯O1 | 0.95 | 2.54 | 3.1077 (19) | 119 |
| N1—H4⋯O2iii | 0.88 | 2.00 | 2.7529 (14) | 143 |
| C6—H2⋯ | 0.95 | 2.79 | 3.7076 (17) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 3Partial crystal packing of the title compound, viewed down the c axis, showing the C—H⋯F interactions (dashed lines) forming rings of (22) graph-set motif connecting the molecules into a chain along the [110] direction.
Figure 4Partial crystal packing of the title compound, viewed down the a axis, showing the C—H⋯O interactions (dashed lines) organized in a C(8) graph-set motif along the [001] direction.
Figure 5Partial crystal packing of the title compound, viewed along the c axis, showing the C—H⋯O interactions (dashed lines) forming rings of (14) graph-set motif connecting the molecules into a chain along the [010] direction.
Figure 6Hirshfeld surface two-dimensional fingerprint plot for the title compound showing (a) H⋯H, (b) H⋯C, (c) O⋯H and (d) H⋯F, (e) C⋯C and (f) H⋯N contacts in detail (cyan dots). The contribution of the interactions to the crystal packing amounts to 31.80, 24.30, 15.20, 10.80, 06.20 and 04.30%, respectively. The d e (y axis) and d i (x axis) values are the closest external and internal distances (values in Å) from given points on the Hirshfeld surface contacts.
Figure 7Graphical representation of the Hirshfeld surface (d norm) for the title compound. The surface is drawn with transparency and simplified for clarity. The surface regions with strongest intermolecular interactions are drawn in magenta and the respective atoms are labelled. [Symmetry code: (i) −x + , −y + , −z + 1.]
Figure 8Partial view of the structure of catena-poly[[[aquasodium]-di-μ-aqua-[aquasodium]-bis(μ-2-oxoindoline-2,3-dione 3-oximato)] tetrakis(oxoindoline-2,3-dione 3-oxime)].
Experimental details
| Crystal data | |
| Chemical formula | [Cu(C8H4FN2O2)2(C5H5N)2] |
|
| 580.00 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 200 |
|
| 19.9709 (14), 7.2155 (5), 17.1989 (12) |
| β (°) | 98.579 (2) |
|
| 2450.6 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.95 |
| Crystal size (mm) | 0.40 × 0.24 × 0.20 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.674, 0.746 |
| No. of measured, independent and observed [ | 18806, 4481, 3966 |
|
| 0.017 |
| (sin θ/λ)max (Å−1) | 0.760 |
| Refinement | |
|
| 0.033, 0.086, 1.12 |
| No. of reflections | 4481 |
| No. of parameters | 178 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.40, −0.34 |
Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸), WinGX (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸), CrystalExplorer (Wolff et al., 2012 ▸), publCIF (Westrip, 2010 ▸) and enCIFer (Allen et al., 2004 ▸).
| [Cu(C8H4FN2O2)2(C5H5N)2] | |
| Monoclinic, | Mo |
| Cell parameters from 9537 reflections | |
| θ = 2.4–32.7° | |
| µ = 0.95 mm−1 | |
| β = 98.579 (2)° | |
| Prismatic, purple | |
| 0.40 × 0.24 × 0.20 mm |
| Bruker APEXII CCD diffractometer | 3966 reflections with |
| Radiation source: fine-focus sealed X-ray tube, Bruker APEX2 CCD | |
| φ and ω scans | θmax = 32.7°, θmin = 2.1° |
| Absorption correction: multi-scan (SADABS; Krause | |
| 18806 measured reflections | |
| 4481 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4481 reflections | (Δ/σ)max < 0.001 |
| 178 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.66193 (6) | 0.43044 (17) | 0.51144 (7) | 0.0202 (2) | |
| C2 | 0.62981 (6) | 0.59529 (16) | 0.54136 (7) | 0.0179 (2) | |
| C3 | 0.57200 (6) | 0.53285 (17) | 0.57616 (7) | 0.0190 (2) | |
| C4 | 0.52421 (7) | 0.6220 (2) | 0.61397 (8) | 0.0252 (2) | |
| H1 | 0.524139 | 0.752687 | 0.620565 | 0.030* | |
| C5 | 0.47665 (7) | 0.5092 (2) | 0.64150 (10) | 0.0308 (3) | |
| C6 | 0.47458 (7) | 0.3189 (2) | 0.63286 (10) | 0.0330 (3) | |
| H2 | 0.440637 | 0.248844 | 0.652851 | 0.040* | |
| C7 | 0.52236 (8) | 0.2300 (2) | 0.59479 (10) | 0.0292 (3) | |
| H3 | 0.521610 | 0.099354 | 0.587721 | 0.035* | |
| C8 | 0.57102 (6) | 0.33887 (17) | 0.56761 (8) | 0.0213 (2) | |
| C9 | 0.79324 (7) | 0.8070 (2) | 0.66905 (8) | 0.0271 (3) | |
| H5 | 0.778142 | 0.929489 | 0.656022 | 0.033* | |
| C10 | 0.81834 (9) | 0.7655 (3) | 0.74669 (9) | 0.0361 (3) | |
| H6 | 0.820299 | 0.858192 | 0.786181 | 0.043* | |
| C11 | 0.84039 (8) | 0.5880 (3) | 0.76578 (9) | 0.0374 (4) | |
| H7 | 0.857425 | 0.556392 | 0.818653 | 0.045* | |
| C12 | 0.83737 (9) | 0.4571 (3) | 0.70703 (10) | 0.0359 (3) | |
| H8 | 0.852688 | 0.334216 | 0.718775 | 0.043* | |
| C13 | 0.81167 (8) | 0.5072 (2) | 0.63051 (9) | 0.0285 (3) | |
| H9 | 0.809607 | 0.416673 | 0.590100 | 0.034* | |
| Cu1 | 0.750000 | 0.750000 | 0.500000 | 0.01704 (6) | |
| F1 | 0.42924 (6) | 0.59199 (17) | 0.67886 (8) | 0.0505 (3) | |
| N1 | 0.62487 (6) | 0.28139 (15) | 0.52904 (8) | 0.0242 (2) | |
| H4 | 0.633443 | 0.165583 | 0.517849 | 0.029* | |
| N2 | 0.65751 (5) | 0.75711 (14) | 0.53373 (6) | 0.01704 (17) | |
| N3 | 0.78961 (5) | 0.67952 (17) | 0.61181 (6) | 0.0208 (2) | |
| O1 | 0.71204 (5) | 0.42959 (14) | 0.47722 (6) | 0.02501 (19) | |
| O2 | 0.62959 (5) | 0.90531 (12) | 0.55624 (6) | 0.02333 (18) |
| C1 | 0.0261 (5) | 0.0133 (5) | 0.0219 (5) | 0.0016 (4) | 0.0052 (4) | 0.0011 (4) |
| C2 | 0.0209 (5) | 0.0130 (5) | 0.0204 (5) | 0.0011 (4) | 0.0051 (4) | 0.0007 (4) |
| C3 | 0.0205 (5) | 0.0150 (5) | 0.0215 (5) | −0.0005 (4) | 0.0041 (4) | 0.0022 (4) |
| C4 | 0.0254 (6) | 0.0219 (6) | 0.0299 (6) | 0.0018 (5) | 0.0092 (5) | 0.0011 (5) |
| C5 | 0.0246 (6) | 0.0335 (8) | 0.0367 (7) | 0.0022 (5) | 0.0131 (5) | 0.0036 (6) |
| C6 | 0.0254 (6) | 0.0329 (8) | 0.0420 (8) | −0.0059 (6) | 0.0098 (6) | 0.0092 (7) |
| C7 | 0.0292 (6) | 0.0201 (6) | 0.0386 (7) | −0.0053 (5) | 0.0057 (5) | 0.0062 (5) |
| C8 | 0.0237 (5) | 0.0145 (5) | 0.0255 (5) | −0.0007 (4) | 0.0036 (4) | 0.0033 (4) |
| C9 | 0.0295 (6) | 0.0297 (7) | 0.0220 (6) | 0.0023 (5) | 0.0034 (5) | −0.0005 (5) |
| C10 | 0.0398 (8) | 0.0476 (10) | 0.0199 (6) | −0.0019 (7) | 0.0009 (5) | −0.0030 (6) |
| C11 | 0.0345 (7) | 0.0532 (11) | 0.0230 (6) | −0.0028 (7) | −0.0006 (5) | 0.0120 (6) |
| C12 | 0.0375 (8) | 0.0367 (8) | 0.0327 (7) | 0.0066 (7) | 0.0026 (6) | 0.0141 (6) |
| C13 | 0.0322 (6) | 0.0278 (7) | 0.0262 (6) | 0.0071 (5) | 0.0069 (5) | 0.0045 (5) |
| Cu1 | 0.01925 (10) | 0.01681 (10) | 0.01575 (9) | 0.00118 (7) | 0.00488 (6) | 0.00176 (7) |
| F1 | 0.0404 (5) | 0.0492 (7) | 0.0705 (8) | 0.0048 (5) | 0.0367 (5) | 0.0016 (6) |
| N1 | 0.0325 (6) | 0.0093 (4) | 0.0326 (6) | 0.0007 (4) | 0.0108 (5) | 0.0011 (4) |
| N2 | 0.0204 (4) | 0.0131 (4) | 0.0179 (4) | 0.0018 (3) | 0.0040 (3) | 0.0000 (3) |
| N3 | 0.0203 (4) | 0.0249 (5) | 0.0182 (4) | 0.0027 (4) | 0.0064 (3) | 0.0029 (4) |
| O1 | 0.0308 (5) | 0.0182 (4) | 0.0284 (5) | 0.0044 (4) | 0.0123 (4) | 0.0013 (4) |
| O2 | 0.0297 (4) | 0.0122 (4) | 0.0301 (5) | 0.0025 (3) | 0.0113 (4) | −0.0021 (3) |
| C1—O1 | 1.2342 (15) | C9—N3 | 1.3412 (19) |
| C1—N1 | 1.3649 (16) | C9—C10 | 1.387 (2) |
| C1—C2 | 1.4798 (17) | C9—H5 | 0.9500 |
| C2—N2 | 1.3070 (15) | C10—C11 | 1.378 (3) |
| C2—C3 | 1.4493 (16) | C10—H6 | 0.9500 |
| C3—C4 | 1.3901 (18) | C11—C12 | 1.378 (3) |
| C3—C8 | 1.4072 (17) | C11—H7 | 0.9500 |
| C4—C5 | 1.386 (2) | C12—C13 | 1.387 (2) |
| C4—H1 | 0.9500 | C12—H8 | 0.9500 |
| C5—F1 | 1.3591 (17) | C13—N3 | 1.3423 (19) |
| C5—C6 | 1.382 (2) | C13—H9 | 0.9500 |
| C6—C7 | 1.392 (2) | Cu1—N2 | 2.0176 (10) |
| C6—H2 | 0.9500 | Cu1—N3 | 2.0319 (11) |
| C7—C8 | 1.3841 (18) | N1—H4 | 0.8800 |
| C7—H3 | 0.9500 | N2—O2 | 1.2917 (13) |
| C8—N1 | 1.4077 (17) | ||
| O1—C1—N1 | 127.37 (12) | N3—C9—H5 | 119.0 |
| O1—C1—C2 | 126.46 (12) | C10—C9—H5 | 119.0 |
| N1—C1—C2 | 106.18 (11) | C11—C10—C9 | 119.13 (15) |
| N2—C2—C3 | 133.98 (11) | C11—C10—H6 | 120.4 |
| N2—C2—C1 | 118.12 (10) | C9—C10—H6 | 120.4 |
| C3—C2—C1 | 107.89 (10) | C10—C11—C12 | 119.00 (14) |
| C4—C3—C8 | 120.61 (12) | C10—C11—H7 | 120.5 |
| C4—C3—C2 | 133.96 (12) | C12—C11—H7 | 120.5 |
| C8—C3—C2 | 105.40 (11) | C11—C12—C13 | 119.13 (15) |
| C5—C4—C3 | 116.20 (13) | C11—C12—H8 | 120.4 |
| C5—C4—H1 | 121.9 | C13—C12—H8 | 120.4 |
| C3—C4—H1 | 121.9 | N3—C13—C12 | 122.02 (15) |
| F1—C5—C6 | 118.42 (13) | N3—C13—H9 | 119.0 |
| F1—C5—C4 | 117.69 (14) | C12—C13—H9 | 119.0 |
| C6—C5—C4 | 123.89 (14) | N2—Cu1—N3 | 88.75 (4) |
| C5—C6—C7 | 119.82 (13) | O1—Cu1—N3 | 89.01 (4) |
| C5—C6—H2 | 120.1 | C1—N1—C8 | 110.49 (10) |
| C7—C6—H2 | 120.1 | C1—N1—H4 | 124.8 |
| C8—C7—C6 | 117.53 (13) | C8—N1—H4 | 124.8 |
| C8—C7—H3 | 121.2 | O2—N2—C2 | 120.09 (10) |
| C6—C7—H3 | 121.2 | O2—N2—Cu1 | 124.18 (8) |
| C7—C8—C3 | 121.93 (13) | C2—N2—Cu1 | 115.18 (8) |
| C7—C8—N1 | 128.03 (12) | C9—N3—C13 | 118.66 (12) |
| C3—C8—N1 | 110.04 (11) | C9—N3—Cu1 | 119.59 (10) |
| N3—C9—C10 | 122.06 (15) | C13—N3—Cu1 | 121.74 (10) |
| O1—C1—C2—N2 | −2.32 (19) | C4—C3—C8—N1 | −178.83 (12) |
| N1—C1—C2—N2 | 177.94 (12) | C2—C3—C8—N1 | −0.40 (14) |
| O1—C1—C2—C3 | 179.09 (13) | N3—C9—C10—C11 | 0.1 (2) |
| N1—C1—C2—C3 | −0.65 (14) | C9—C10—C11—C12 | 0.5 (3) |
| N2—C2—C3—C4 | 0.5 (3) | C10—C11—C12—C13 | −0.6 (3) |
| C1—C2—C3—C4 | 178.76 (14) | C11—C12—C13—N3 | 0.0 (2) |
| N2—C2—C3—C8 | −177.63 (14) | O1—C1—N1—C8 | −179.33 (13) |
| C1—C2—C3—C8 | 0.63 (13) | C2—C1—N1—C8 | 0.41 (14) |
| C8—C3—C4—C5 | −0.3 (2) | C7—C8—N1—C1 | 179.97 (14) |
| C2—C3—C4—C5 | −178.20 (14) | C3—C8—N1—C1 | −0.01 (16) |
| C3—C4—C5—F1 | 179.91 (13) | C3—C2—N2—O2 | −4.6 (2) |
| C3—C4—C5—C6 | −0.4 (2) | C1—C2—N2—O2 | 177.27 (11) |
| F1—C5—C6—C7 | 179.92 (15) | C3—C2—N2—Cu1 | 167.30 (11) |
| C4—C5—C6—C7 | 0.2 (3) | C1—C2—N2—Cu1 | −10.83 (14) |
| C5—C6—C7—C8 | 0.6 (2) | C10—C9—N3—C13 | −0.7 (2) |
| C6—C7—C8—C3 | −1.3 (2) | C10—C9—N3—Cu1 | 178.48 (12) |
| C6—C7—C8—N1 | 178.68 (14) | C12—C13—N3—C9 | 0.6 (2) |
| C4—C3—C8—C7 | 1.2 (2) | C12—C13—N3—Cu1 | −178.54 (12) |
| C2—C3—C8—C7 | 179.62 (13) |
| H··· | ||||
| C9—H5···O1i | 0.95 | 2.54 | 3.1424 (18) | 121 |
| C12—H8···F1ii | 0.95 | 2.49 | 3.287 (2) | 142 |
| C13—H9···O1 | 0.95 | 2.54 | 3.1077 (19) | 119 |
| N1—H4···O2iii | 0.88 | 2.00 | 2.7529 (14) | 143 |
| C6—H2··· | 0.95 | 2.79 | 3.7076 (17) | 162 |