Literature DB >> 29765736

Crystal structure of 2-isopropyl-4-meth-oxy-5-methyl-phenyl 4-methyl-benzene-sulfonate.

Yassine Laamari1, Aziz Auhmani1, My Youssef Ait Itto1, Jean-Claude Daran2, Abdelwahed Auhmani1, Mostafa Kouili3.   

Abstract

The title compound, C18H22O4S, an hemisynthetic product, was obtained by the tosyl-ation reaction of the naturally occurring meroterpene p-meth-oxy-thymol. The mol-ecule comprises a tetra-substitued phenyl ring linked to a toluene-sulfonate through one of its O atoms. In the crystal, C-H⋯O and C-H⋯π inter-actions link the mol-ecules, forming a three-dimensional network.

Entities:  

Keywords:  crystal structure; drug synthesis; organic synthesis; tosyl­ation of alcohols

Year:  2018        PMID: 29765736      PMCID: PMC5947816          DOI: 10.1107/S2056989018003110

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Tosyl­ation of alcohols is an important transformation in organic synthesis. This transformation is usually achieved with p-toluene sulfonyl chloride, which is very reactive (Greene & Wuts, 1999 ▸; Yoshida et al., 1999 ▸). Tosyl­ate is an important functional group in organic synthesis as it makes a good leaving group (Wagner & Zokk, 1955 ▸; Sandler & Karo, 1983 ▸). Indeed, tosyl­ates are used as inter­mediates in the synthesis of several drugs (Kim et al., 1995 ▸; Morgan et al., 1997 ▸). Furthermore, they have also been found to possess important biological activities (Kacem et al., 2002 ▸; Kaleemullah et al., 2012 ▸). The hemisynthesis of 2-isopropyl-4-meth­oxy-5-methyl­phenyl 4-methyl­benzene­sulfonate 2 from naturally occurring p-meth­oxy­thymol 1 was undertaken with the aim of preparing meroterpenic tosyl­ate. X-ray single-crystal structure analysis allowed its full structure to be confirmed unambiguously.

Structural commentary

Compound 2 is built up from a tetra­substituted phenyl ring linked to a toluene­sulfonate unit through one of its oxygen atoms (Fig. 1 ▸). The two phenyl rings form a dihedral angle of 60.03 (9)°. Atoms S1 and C5′ are coplanar with the C1′–C6′ phenyl ring, their distances from the plane being 0.057 (3) and 0.031 (3) Å, respectively. Considering the connected atoms of the four substituents on the C1–C6 phenyl ring, three of them O2, C8 and C11 are roughly in the plane of the phenyl ring, deviating by only 0.011 (3), 0.014 (3) and 0.012 (3) Å, respectively, from the mean plane, whereas atom O1 is displaced slightly out of the plane by 0.101 (3) Å. This slight distortion might be related to the occurrence of a weak C—H⋯π inter­action between the C9 atom and the centroid Cg2 of the C1′–C6′ phenyl ring (Table 1 ▸).
Figure 1

Mol­ecular view of compound 2 with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the phenyl rings C1–C6 and C1′–C6′, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C3′—H3′⋯O1i 0.952.673.610 (2)169
C5′—H5′3⋯O3ii 0.982.663.589 (3)159
C7—H7A⋯O4iii 0.982.723.693 (3)175
C10—H10B⋯O3iv 0.982.613.317 (3)130
C10—H10A⋯O4iii 0.982.703.521 (3)142
C5′—H5′2⋯Cg2v 0.982.843.706148
C11—H11BCg1iv 0.982.753.635150
C9—H9ACg20.982.703.5373144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Supra­molecular features

In the crystal, pairs of mol­ecules are linked though C—H⋯O inter­actions (Table 1 ▸), forming pseudo-dimer arranged around inversion centers (Fig. 2 ▸). Further C—H⋯O hydrogen bonds and C—H⋯π inter­actions (Table 1 ▸, Fig. 2 ▸) lead to the formation of a three-dimensional network.
Figure 2

Partial packing view showing the C—H⋯O and C—H⋯π inter­actions (dotted lines). Only H atoms involved in hydrogen bonding are shown.

Database survey

A search of the Cambridge Structural Database (CSD, version 5.38, last update May 2017; Groom et al., 2016 ▸) for a tosyl­ate fragment bearing an organic substituent on one of its oxygen atoms revealed only three hits. Two of these compounds are closely related to compound 2. The first, 5-bromo-2,3-di­methyl­phenol-1-(4-methyl­phenyl­sulfon­yloxy)benzene (KAWDAN; Niestroj et al., 1998 ▸), is built up from a tosyl­ate attached to a phenyl ring substituted by two methyl groups and one bromine atom whereas the second, tetra­methyl-p-phenyl­ene p-di­toluene­sulfonate (TMPDTS; Wieczorek et al., 1975 ▸), is built up from a tetra­methyl-substituted phenyl ring attached to two tosyl­ate units. A comparison of selected distances in compound 2 with those of two structures reveals that the geometries are very similar for all three compounds (Table 2 ▸). The most marked difference is the dihedral angle between the phenyl rings, 60.03 (9)° in 2 and 15.32 and 43.02° in KAWDAN and TMPDTS, respectively. The large dihedral angle in TMPDTS might be related to the occurrence of two bulky substituents on the central phenyl ring.
Table 2

Selected structural parameters of compound 2 compared with closely related structures

  2 KAWDANa TMPDTSb
C1′—S11.749 (2)1.7481.732
S1—O11.597 (1)1.5981.599
O1—C11.428 (2)1.4251.428
C1′—S1—O1104.76 (8)98.83102.37
S1—O1—C1120.71 (11)116.07119.84
Dihedral angle60.03 (9)15.3243.02

References: a Niestroj et al. (1998 ▸); b Wieczorek et al. (1975 ▸).

Synthesis and crystallization

In a 100mL flask, 430 mg (2.33mmol) of p-meth­oxy­thymol 1 were dissolved in 15 mL of pyridine and then 908 mg (4.66 mmol) of para-toluene­sulfonyl chloride were added. The reaction mixture was heated to reflux for two h. The end of the reaction was controlled by TLC. The reaction mixture was washed with a hydro­chloric acid solution (0.1 M) to neutral pH, extracted three times with ethyl ether (3 × 20 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. The crude product was purified by silica gel column chromatography using hexa­ne/ethyl acetate (94:6) as eluent to give 360 mg (1.07 mmol, 46% yield) of 2-isopropyl-4-meth­oxy-5-methyl­phenyl 4-methyl­benzene­sulfonate 2. X-ray quality colourless crystals were obtained by slow evaporation of a petroleum ether solution of the title compound. NMR data for compound 2: 1H NMR (300 MHz, CDCl3): 6.66 (s, H-6), 6.84 (s, H-3), 3.45 (sept, H-8), 1.09 (d, H-9,H-10), 2.13 (s, H-7), 3.72 (s, H-10), 7.33 (d, H-3′), 7.75 (d, H-2′), 2.43 (s, H-5′) ppm. 13C NMR (75 MHz, CDCl3): 156.4 (C-1), 124.0 (C-2), 107.5 (C-3), 145.2 (C-4), 139.8 (C-5), 124.1 (C-6),15.7 (C-7), 26.8 (C-8), 23.1 (C-9, C-10), 55.4 (OCH3), 145.2 (C-1′), 129.7 (C-2′), 128.4 (C-3′), 139.7 (C-4′), 21.5 (C-5′) ppm.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. All H atoms were fixed geometrically and treated as riding with C—H = 1.0 (methine), 0.98 (meth­yl) or 0.95 Å (aromatic) with U iso(H) = 1.2U eq(CH and CH2) or U iso(H) = 1.5U eq(CH3).
Table 3

Experimental details

Crystal data
Chemical formulaC18H22O4S
M r 334.41
Crystal system, space groupMonoclinic, P21/n
Temperature (K)173
a, b, c (Å)8.2226 (6), 14.5382 (9), 14.7230 (8)
β (°)100.020 (6)
V3)1733.17 (19)
Z 4
Radiation typeMo Kα
μ (mm−1)0.20
Crystal size (mm)0.35 × 0.25 × 0.10
 
Data collection
DiffractometerRigaku Oxford Diffraction Xcalibur Eos Gemini ultra
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2015)
T min, T max 0.791, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections18172, 3532, 2777
R int 0.044
(sin θ/λ)max−1)0.625
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.042, 0.110, 1.06
No. of reflections3532
No. of parameters213
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.34, −0.34

Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SIR97 (Altomare et al., 1999 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 1997 ▸) and Mercury (Macrae et al., 2008 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989018003110/xu5919sup1.cif Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989018003110/xu5919Isup3.cml Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018003110/xu5919Isup3.hkl CCDC reference: 1825267 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H22O4SF(000) = 712
Mr = 334.41Dx = 1.282 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.2226 (6) ÅCell parameters from 4433 reflections
b = 14.5382 (9) Åθ = 3.8–28.5°
c = 14.7230 (8) ŵ = 0.20 mm1
β = 100.020 (6)°T = 173 K
V = 1733.17 (19) Å3Box, colourless
Z = 40.35 × 0.25 × 0.10 mm
Rigaku Oxford Diffraction Xcalibur Eos Gemini ultra diffractometer3532 independent reflections
Radiation source: Enhance (Mo) X-ray Source2777 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
Detector resolution: 16.1978 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2015)k = −18→16
Tmin = 0.791, Tmax = 1.000l = −18→18
18172 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0459P)2 + 0.814P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3532 reflectionsΔρmax = 0.34 e Å3
213 parametersΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.95 Å (aromatic), 0.98 Å (methyl), 1.0Å (methine) with Uiso(H) = 1.2Ueq(CH and C=CH) or Uiso(H) = 1.5Ueq(CH3).
xyzUiso*/Ueq
C10.0729 (2)0.19454 (12)0.12387 (12)0.0244 (4)
C1'0.2295 (2)0.11565 (13)0.32646 (12)0.0273 (4)
C2'0.2423 (2)0.02563 (13)0.29895 (13)0.0319 (4)
H2'0.150817−0.0043940.2626200.038*
C20.2184 (2)0.20290 (12)0.08959 (12)0.0253 (4)
C3'0.3907 (3)−0.02031 (14)0.32514 (13)0.0351 (5)
H3'0.400221−0.0822690.3062380.042*
C30.2171 (2)0.16786 (13)0.00089 (12)0.0281 (4)
H30.3140490.172671−0.0257400.034*
C40.0786 (2)0.12650 (13)−0.04881 (12)0.0283 (4)
C4'0.5259 (2)0.02225 (14)0.37844 (12)0.0323 (4)
C5−0.0681 (2)0.11891 (13)−0.01288 (13)0.0293 (4)
C5'0.6862 (3)−0.02793 (16)0.40828 (15)0.0414 (5)
H5'10.674385−0.0918120.3869050.062*
H5'20.714962−0.0268640.4757240.062*
H5'30.7736180.0021850.3816670.062*
C6−0.0682 (2)0.15452 (13)0.07405 (13)0.0284 (4)
H6−0.1660240.1515930.1000700.034*
C6'0.5098 (2)0.11365 (15)0.40381 (13)0.0356 (5)
H6'0.6017350.1443170.4390070.043*
C70.4269 (3)0.32911 (16)0.09104 (15)0.0451 (6)
H7A0.4594460.3084520.0334160.068*
H7B0.5208070.3595050.1295710.068*
H7C0.3347860.3725160.0770950.068*
C7'0.3633 (2)0.16037 (14)0.37888 (13)0.0325 (4)
H7'0.3536640.2224830.3972710.039*
C80.3736 (2)0.24634 (14)0.14252 (13)0.0310 (4)
H80.3490500.2684050.2030200.037*
C90.5123 (3)0.17540 (18)0.16200 (16)0.0483 (6)
H9A0.4748040.1224970.1940850.072*
H9B0.6087700.2031730.2007590.072*
H9C0.5423090.1550010.1036580.072*
C100.2226 (3)0.08648 (18)−0.17038 (15)0.0526 (7)
H10A0.2617780.149089−0.1785480.079*
H10B0.2039270.054579−0.2299200.079*
H10C0.3056330.053107−0.1268490.079*
C11−0.2193 (3)0.07531 (15)−0.06830 (14)0.0388 (5)
H11A−0.3073730.073020−0.0312370.058*
H11B−0.1928800.012726−0.0857260.058*
H11C−0.2562900.111763−0.1240590.058*
O10.06333 (15)0.23611 (8)0.21065 (8)0.0269 (3)
O20.07192 (18)0.09037 (10)−0.13523 (9)0.0391 (4)
O3−0.08697 (16)0.10974 (10)0.27106 (10)0.0378 (3)
O40.02806 (17)0.24132 (10)0.36634 (9)0.0386 (4)
S10.04212 (6)0.17449 (3)0.29760 (3)0.02896 (14)
U11U22U33U12U13U23
C10.0260 (9)0.0203 (9)0.0269 (9)0.0030 (7)0.0041 (7)0.0025 (7)
C1'0.0316 (9)0.0231 (10)0.0270 (9)0.0023 (8)0.0049 (7)0.0001 (7)
C2'0.0354 (10)0.0247 (10)0.0349 (10)−0.0030 (8)0.0038 (8)−0.0036 (8)
C20.0248 (9)0.0208 (9)0.0298 (9)−0.0004 (7)0.0029 (7)0.0022 (7)
C3'0.0445 (12)0.0226 (10)0.0392 (11)0.0032 (9)0.0098 (9)−0.0032 (8)
C30.0297 (9)0.0242 (10)0.0313 (9)−0.0007 (8)0.0084 (7)0.0022 (8)
C40.0363 (10)0.0210 (10)0.0262 (9)0.0000 (8)0.0016 (7)0.0025 (7)
C4'0.0379 (11)0.0306 (11)0.0287 (9)0.0052 (9)0.0067 (8)0.0033 (8)
C50.0301 (9)0.0206 (10)0.0349 (10)−0.0003 (8)−0.0013 (8)0.0063 (8)
C5'0.0415 (12)0.0441 (13)0.0398 (11)0.0126 (10)0.0103 (9)0.0081 (10)
C60.0230 (9)0.0255 (10)0.0366 (10)0.0030 (8)0.0045 (7)0.0067 (8)
C6'0.0355 (11)0.0355 (12)0.0331 (10)0.0002 (9)−0.0019 (8)−0.0039 (9)
C70.0464 (13)0.0481 (14)0.0418 (12)−0.0235 (11)0.0107 (10)−0.0079 (10)
C7'0.0395 (11)0.0236 (10)0.0327 (10)0.0021 (8)0.0017 (8)−0.0047 (8)
C80.0251 (9)0.0385 (12)0.0297 (9)−0.0050 (8)0.0057 (7)−0.0050 (8)
C90.0276 (10)0.0672 (17)0.0477 (13)0.0069 (11)0.0003 (9)−0.0045 (12)
C100.0641 (16)0.0617 (16)0.0368 (12)−0.0238 (13)0.0219 (11)−0.0168 (11)
C110.0359 (11)0.0347 (12)0.0416 (11)−0.0050 (9)−0.0046 (9)0.0020 (9)
O10.0272 (6)0.0225 (7)0.0322 (7)0.0011 (5)0.0083 (5)0.0012 (5)
O20.0473 (9)0.0394 (9)0.0305 (7)−0.0112 (7)0.0062 (6)−0.0057 (6)
O30.0309 (7)0.0380 (8)0.0450 (8)−0.0052 (6)0.0079 (6)0.0068 (6)
O40.0411 (8)0.0403 (8)0.0376 (8)0.0094 (7)0.0153 (6)−0.0038 (6)
S10.0277 (2)0.0285 (3)0.0323 (3)0.0020 (2)0.00963 (18)0.00179 (19)
C1—C21.382 (2)C6—H60.9500
C1—C61.388 (2)C6'—C7'1.376 (3)
C1—O11.428 (2)C6'—H6'0.9500
C1'—C2'1.379 (3)C7—C81.526 (3)
C1'—C7'1.390 (3)C7—H7A0.9800
C1'—S11.7486 (19)C7—H7B0.9800
C2'—C3'1.386 (3)C7—H7C0.9800
C2'—H2'0.9500C7'—H7'0.9500
C2—C31.400 (2)C8—C91.527 (3)
C2—C81.513 (2)C8—H81.0000
C3'—C4'1.389 (3)C9—H9A0.9800
C3'—H3'0.9500C9—H9B0.9800
C3—C41.380 (3)C9—H9C0.9800
C3—H30.9500C10—O21.424 (3)
C4—O21.369 (2)C10—H10A0.9800
C4—C51.403 (3)C10—H10B0.9800
C4'—C6'1.393 (3)C10—H10C0.9800
C4'—C5'1.504 (3)C11—H11A0.9800
C5—C61.381 (3)C11—H11B0.9800
C5—C111.503 (3)C11—H11C0.9800
C5'—H5'10.9800O1—S11.5967 (12)
C5'—H5'20.9800O3—S11.4216 (14)
C5'—H5'30.9800O4—S11.4221 (14)
C2—C1—C6122.74 (16)C8—C7—H7B109.5
C2—C1—O1118.38 (15)H7A—C7—H7B109.5
C6—C1—O1118.64 (15)C8—C7—H7C109.5
C2'—C1'—C7'120.86 (18)H7A—C7—H7C109.5
C2'—C1'—S1120.13 (15)H7B—C7—H7C109.5
C7'—C1'—S1119.00 (14)C6'—C7'—C1'119.26 (18)
C1'—C2'—C3'118.97 (18)C6'—C7'—H7'120.4
C1'—C2'—H2'120.5C1'—C7'—H7'120.4
C3'—C2'—H2'120.5C2—C8—C7111.27 (16)
C1—C2—C3116.24 (16)C2—C8—C9110.51 (17)
C1—C2—C8123.71 (16)C7—C8—C9110.87 (17)
C3—C2—C8120.05 (16)C2—C8—H8108.0
C2'—C3'—C4'121.44 (18)C7—C8—H8108.0
C2'—C3'—H3'119.3C9—C8—H8108.0
C4'—C3'—H3'119.3C8—C9—H9A109.5
C4—C3—C2121.63 (17)C8—C9—H9B109.5
C4—C3—H3119.2H9A—C9—H9B109.5
C2—C3—H3119.2C8—C9—H9C109.5
O2—C4—C3123.76 (17)H9A—C9—H9C109.5
O2—C4—C5114.99 (16)H9B—C9—H9C109.5
C3—C4—C5121.26 (17)O2—C10—H10A109.5
C3'—C4'—C6'118.20 (18)O2—C10—H10B109.5
C3'—C4'—C5'121.55 (18)H10A—C10—H10B109.5
C6'—C4'—C5'120.25 (18)O2—C10—H10C109.5
C6—C5—C4117.33 (16)H10A—C10—H10C109.5
C6—C5—C11121.84 (18)H10B—C10—H10C109.5
C4—C5—C11120.83 (18)C5—C11—H11A109.5
C4'—C5'—H5'1109.5C5—C11—H11B109.5
C4'—C5'—H5'2109.5H11A—C11—H11B109.5
H5'1—C5'—H5'2109.5C5—C11—H11C109.5
C4'—C5'—H5'3109.5H11A—C11—H11C109.5
H5'1—C5'—H5'3109.5H11B—C11—H11C109.5
H5'2—C5'—H5'3109.5C1—O1—S1120.71 (11)
C5—C6—C1120.79 (17)C4—O2—C10117.16 (15)
C5—C6—H6119.6O3—S1—O4119.91 (9)
C1—C6—H6119.6O3—S1—O1109.37 (8)
C7'—C6'—C4'121.25 (18)O4—S1—O1102.77 (8)
C7'—C6'—H6'119.4O3—S1—C1'109.08 (9)
C4'—C6'—H6'119.4O4—S1—C1'109.79 (9)
C8—C7—H7A109.5O1—S1—C1'104.76 (8)
D—H···AD—HH···AD···AD—H···A
C3′—H3′···O1i0.952.673.610 (2)169
C5′—H5′3···O3ii0.982.663.589 (3)159
C7—H7A···O4iii0.982.723.693 (3)175
C10—H10B···O3iv0.982.613.317 (3)130
C10—H10A···O4iii0.982.703.521 (3)142
C5′—H5′2···Cg2v0.982.843.706148
C11—H11B···Cg1iv0.982.753.635150
C9—H9A···Cg20.982.703.5373144
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