| Literature DB >> 29765728 |
Luis F B Osorio1, Samir A Carvalho1, Edson F da Silva1, Carlos A M Fraga2, Solange M S V Wardell3, Bruce F Milne4, James L Wardell5, William T A Harrison5.
Abstract
The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyl-oxime, C12H12N4O3, (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carb-alde-hyde O-(4-fluoro-benz-yl) oxime, C12H11FN4O3, (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromo-benz-yl) oxime, C12H11BrN4O3, (III), are described. The dihedral angle between the ring systems in (I) is 49.66 (5)° and the linking Nm-C-C=N (m = methyl-ated) bond shows an anti conformation [torsion angle = 175.00 (15)°]. Compounds (II) and (III) are isostructural [dihedral angle between the aromatic rings = 8.31 (5)° in (II) and 5.34 (15)° in (III)] and differ from (I) in showing a near-syn conformation for the Nm-C-C=N linker [torsion angles for (II) and (III) = 17.64 (18) and 8.7 (5)°, respectively], which allows for the occurrence of a short intra-molecular C-H⋯N contact. In the crystal of (I), C-H⋯N hydrogen bonds link the mol-ecules into [010] chains, which are cross-linked by very weak C-H⋯O bonds into (100) sheets. Weak aromatic π-π stacking inter-actions occur between the sheets. The extended structures of (II) and (III) feature several C-H⋯N and C-H⋯O hydrogen bonds, which link the mol-ecules into three-dimensional networks, which are consolidated by aromatic π-π stacking inter-actions. Conformational energy calculations and Hirshfeld fingerprint analyses for (I), (II) and (III) are presented and discussed.Entities:
Keywords: Hirshfeld surface; benzoxathiol-2-one; crystal structure; hydrogen bonds
Year: 2018 PMID: 29765728 PMCID: PMC5947808 DOI: 10.1107/S2056989018002876
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.98 | 2.51 | 3.466 (2) | 165 |
| C5—H5⋯O3ii | 0.95 | 2.65 | 3.175 (2) | 115 |
Symmetry codes: (i) ; (ii) .
Figure 1The molecular structure of (I) showing 50% displacement ellipsoids.
Figure 2The molecular structure of (II) showing 50% displacement ellipsoids.
Figure 3The molecular structure of (III) showing 50% displacement ellipsoids.
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.98 | 2.29 | 3.0184 (15) | 131 |
| C4—H4 | 0.98 | 2.63 | 3.5693 (16) | 160 |
| C9—H9⋯N1ii | 0.95 | 2.58 | 3.4973 (16) | 163 |
| C2—H2⋯O3iii | 0.95 | 2.49 | 3.3165 (15) | 145 |
| C5—H5⋯O2iv | 0.95 | 2.63 | 3.1676 (14) | 116 |
| C6—H6 | 0.99 | 2.54 | 3.1376 (14) | 119 |
| C4—H4 | 0.98 | 2.77 | 3.353 (2) | 119 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Hydrogen-bond geometry (Å, °) for (III)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.98 | 2.24 | 2.997 (4) | 133 |
| C4—H4 | 0.98 | 2.62 | 3.499 (4) | 149 |
| C9—H9⋯N1ii | 0.95 | 2.77 | 3.681 (4) | 160 |
| C2—H2⋯O3iii | 0.95 | 2.44 | 3.282 (4) | 148 |
| C5—H5⋯O2iv | 0.95 | 2.64 | 3.341 (4) | 131 |
| C6—H6 | 0.99 | 2.63 | 3.254 (4) | 121 |
| C4—H4 | 0.98 | 2.85 | 3.491 (3) | 124 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Relative conformational energies (kJ mol−1)
The two values refer to a vacuum and methanol solvation, respectively. The energy of the syn conformer is arbitrarily set to zero in each case.
| Substituent | Compound |
|
|
|---|---|---|---|
| H | (I) | 14.90/5.91 | 0 |
| CH3 | Carvalho | 14.90/6.84 | 0 |
| F | (II) | 17.12/6.17 | 0 |
| Br | (III) | 16.84/6.17 | 0 |
Figure 4Fragment of an [010] hydrogen-bonded chain in the crystal of (I). Symmetry codes: (i) –x, + y, 1/2 – z; (iii) x, y + 1, z.
Hirshfeld contact interactions (%)
| Contact type | (I) | (II) | (III) |
|---|---|---|---|
| H⋯H | 34.6 | 30.3 | 28.3 |
| O⋯H/H⋯O | 24.6 | 24.4 | 23.2 |
| N⋯H/H⋯N | 14.7 | 9.4 | 8.1 |
| C⋯H/H⋯C | 12.4 | 6.0 | 6.5 |
| C⋯C | 4.6 | 5.8 | 5.9 |
|
| – | 11.7 | 15.0 |
Experimental details
| (I) | (II) | (III) | |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | C12H12N4O3 | C12H11FN4O3 | C12H11BrN4O3 |
|
| 260.26 | 278.25 | 339.16 |
| Crystal system, space group | Monoclinic, | Monoclinic, | Monoclinic, |
| Temperature (K) | 100 | 120 | 120 |
|
| 7.6399 (5), 10.5071 (7), 14.9243 (11) | 7.5484 (2), 12.6442 (4), 13.4150 (9) | 7.6024 (2), 12.7526 (3), 13.8954 (5) |
| β (°) | 97.942 (3) | 102.988 (7) | 104.869 (2) |
|
| 1186.53 (14) | 1247.62 (10) | 1302.05 (7) |
|
| 4 | 4 | 4 |
| Radiation type | Mo | Mo | Mo |
| μ (mm−1) | 0.11 | 0.12 | 3.17 |
| Crystal size (mm) | 0.11 × 0.07 × 0.03 | 0.19 × 0.13 × 0.10 | 0.66 × 0.52 × 0.24 |
| Data collection | |||
| Diffractometer | Rigaku Saturn724+ CCD | Rigaku Saturn724+ CCD | Rigaku Mercury CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( | Multi-scan ( |
|
| 0.618, 1.000 | 0.802, 1.000 | 0.438, 1.000 |
| No. of measured, independent and observed [ | 7757, 2705, 1891 | 8522, 2848, 2292 | 16791, 2974, 2835 |
|
| 0.055 | 0.021 | 0.065 |
| (sin θ/λ)max (Å−1) | 0.649 | 0.649 | 0.650 |
| Refinement | |||
|
| 0.047, 0.126, 0.95 | 0.034, 0.094, 1.09 | 0.051, 0.140, 1.11 |
| No. of reflections | 2705 | 2848 | 2974 |
| No. of parameters | 173 | 182 | 182 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.24, −0.22 | 0.29, −0.18 | 1.78, −1.03 |
Computer programs: CrystalClear (Rigaku, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).
| C12H12N4O3 | |
| Monoclinic, | Mo |
| Cell parameters from 7971 reflections | |
| θ = 2.4–27.5° | |
| µ = 0.11 mm−1 | |
| β = 97.942 (3)° | |
| Plate, colourless | |
| 0.11 × 0.07 × 0.03 mm |
| Rigaku Saturn724+ CCD diffractometer | 1891 reflections with |
| ω scans | |
| Absorption correction: multi-scan ( | θmax = 27.5°, θmin = 2.4° |
| 7757 measured reflections | |
| 2705 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2705 reflections | Δρmax = 0.24 e Å−3 |
| 173 parameters | Δρmin = −0.22 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | −0.2026 (2) | 0.18424 (17) | 0.08287 (11) | 0.0272 (4) | |
| C2 | −0.1242 (2) | 0.06989 (17) | 0.10516 (11) | 0.0302 (4) | |
| H2 | −0.1177 | 0.0010 | 0.0646 | 0.036* | |
| C3 | −0.0953 (2) | 0.18453 (17) | 0.22478 (11) | 0.0262 (4) | |
| C4 | −0.2593 (2) | 0.38590 (16) | 0.17211 (11) | 0.0295 (4) | |
| H4A | −0.3780 | 0.3918 | 0.1378 | 0.044* | |
| H4B | −0.1832 | 0.4512 | 0.1508 | 0.044* | |
| H4C | −0.2661 | 0.3991 | 0.2365 | 0.044* | |
| C5 | −0.0422 (2) | 0.23260 (16) | 0.31595 (11) | 0.0277 (4) | |
| H5 | −0.0610 | 0.3193 | 0.3300 | 0.033* | |
| C6 | 0.1846 (3) | 0.13647 (17) | 0.51983 (12) | 0.0353 (5) | |
| H6A | 0.2794 | 0.0969 | 0.4903 | 0.042* | |
| H6B | 0.1069 | 0.0680 | 0.5372 | 0.042* | |
| C7 | 0.2641 (2) | 0.20824 (16) | 0.60261 (11) | 0.0275 (4) | |
| C8 | 0.2637 (2) | 0.15343 (17) | 0.68727 (11) | 0.0296 (4) | |
| H8 | 0.2039 | 0.0751 | 0.6927 | 0.036* | |
| C9 | 0.3508 (2) | 0.21295 (18) | 0.76444 (12) | 0.0328 (4) | |
| H9 | 0.3522 | 0.1739 | 0.8220 | 0.039* | |
| C10 | 0.4346 (2) | 0.32796 (18) | 0.75770 (12) | 0.0336 (4) | |
| H10 | 0.4943 | 0.3680 | 0.8103 | 0.040* | |
| C11 | 0.4313 (2) | 0.38490 (17) | 0.67342 (12) | 0.0327 (4) | |
| H11 | 0.4865 | 0.4652 | 0.6686 | 0.039* | |
| C12 | 0.3475 (2) | 0.32503 (17) | 0.59602 (11) | 0.0293 (4) | |
| H12 | 0.3471 | 0.3639 | 0.5385 | 0.035* | |
| N1 | −0.05705 (18) | 0.06958 (14) | 0.19410 (9) | 0.0292 (4) | |
| N2 | −0.18520 (17) | 0.25946 (13) | 0.15896 (9) | 0.0257 (3) | |
| N3 | 0.03028 (18) | 0.15619 (14) | 0.37682 (9) | 0.0287 (3) | |
| N4 | −0.28663 (19) | 0.22404 (14) | −0.00435 (9) | 0.0308 (4) | |
| O1 | 0.08352 (16) | 0.22291 (11) | 0.45775 (7) | 0.0304 (3) | |
| O2 | −0.33264 (17) | 0.33549 (12) | −0.01644 (8) | 0.0382 (3) | |
| O3 | −0.30669 (18) | 0.14106 (13) | −0.06357 (8) | 0.0402 (4) |
| C1 | 0.0262 (8) | 0.0346 (9) | 0.0192 (8) | −0.0040 (7) | −0.0031 (6) | 0.0003 (7) |
| C2 | 0.0309 (9) | 0.0354 (9) | 0.0224 (9) | −0.0024 (8) | −0.0026 (7) | −0.0007 (7) |
| C3 | 0.0231 (8) | 0.0319 (9) | 0.0215 (8) | −0.0024 (7) | −0.0038 (6) | 0.0032 (7) |
| C4 | 0.0303 (9) | 0.0299 (8) | 0.0257 (9) | 0.0015 (7) | −0.0055 (7) | 0.0003 (7) |
| C5 | 0.0276 (9) | 0.0319 (8) | 0.0215 (8) | −0.0012 (7) | −0.0033 (7) | 0.0000 (7) |
| C6 | 0.0412 (10) | 0.0328 (9) | 0.0270 (9) | 0.0019 (8) | −0.0131 (8) | 0.0024 (8) |
| C7 | 0.0243 (8) | 0.0320 (9) | 0.0232 (8) | 0.0031 (7) | −0.0070 (6) | 0.0001 (7) |
| C8 | 0.0266 (8) | 0.0335 (9) | 0.0272 (9) | 0.0006 (7) | −0.0018 (7) | 0.0034 (7) |
| C9 | 0.0328 (9) | 0.0427 (10) | 0.0211 (9) | 0.0104 (8) | −0.0030 (7) | 0.0024 (8) |
| C10 | 0.0305 (9) | 0.0404 (10) | 0.0263 (9) | 0.0069 (8) | −0.0090 (7) | −0.0072 (8) |
| C11 | 0.0271 (9) | 0.0317 (9) | 0.0366 (10) | −0.0005 (7) | −0.0049 (7) | −0.0031 (8) |
| C12 | 0.0285 (9) | 0.0344 (9) | 0.0230 (9) | 0.0024 (8) | −0.0031 (7) | 0.0037 (7) |
| N1 | 0.0306 (7) | 0.0339 (8) | 0.0212 (7) | −0.0019 (6) | −0.0033 (6) | 0.0012 (6) |
| N2 | 0.0247 (7) | 0.0305 (7) | 0.0197 (7) | −0.0012 (6) | −0.0049 (6) | 0.0002 (6) |
| N3 | 0.0282 (7) | 0.0355 (8) | 0.0203 (7) | −0.0027 (6) | −0.0040 (6) | −0.0042 (6) |
| N4 | 0.0321 (8) | 0.0374 (8) | 0.0202 (7) | −0.0036 (7) | −0.0054 (6) | 0.0002 (7) |
| O1 | 0.0334 (7) | 0.0358 (6) | 0.0185 (6) | 0.0028 (5) | −0.0087 (5) | −0.0025 (5) |
| O2 | 0.0460 (8) | 0.0378 (7) | 0.0271 (7) | 0.0049 (6) | −0.0085 (6) | 0.0048 (6) |
| O3 | 0.0500 (8) | 0.0428 (7) | 0.0236 (7) | −0.0058 (6) | −0.0097 (6) | −0.0054 (6) |
| C1—C2 | 1.363 (2) | C6—H6A | 0.9900 |
| C1—N2 | 1.375 (2) | C6—H6B | 0.9900 |
| C1—N4 | 1.432 (2) | C7—C8 | 1.389 (2) |
| C2—N1 | 1.355 (2) | C7—C12 | 1.392 (2) |
| C2—H2 | 0.9500 | C8—C9 | 1.396 (2) |
| C3—N1 | 1.338 (2) | C8—H8 | 0.9500 |
| C3—N2 | 1.368 (2) | C9—C10 | 1.378 (3) |
| C3—C5 | 1.456 (2) | C9—H9 | 0.9500 |
| C4—N2 | 1.468 (2) | C10—C11 | 1.390 (3) |
| C4—H4A | 0.9800 | C10—H10 | 0.9500 |
| C4—H4B | 0.9800 | C11—C12 | 1.391 (2) |
| C4—H4C | 0.9800 | C11—H11 | 0.9500 |
| C5—N3 | 1.279 (2) | C12—H12 | 0.9500 |
| C5—H5 | 0.9500 | N3—O1 | 1.4071 (16) |
| C6—O1 | 1.4428 (19) | N4—O2 | 1.2287 (18) |
| C6—C7 | 1.502 (2) | N4—O3 | 1.2359 (18) |
| C2—C1—N2 | 108.43 (14) | C12—C7—C6 | 121.42 (15) |
| C2—C1—N4 | 127.30 (16) | C7—C8—C9 | 120.27 (17) |
| N2—C1—N4 | 124.26 (15) | C7—C8—H8 | 119.9 |
| N1—C2—C1 | 109.59 (15) | C9—C8—H8 | 119.9 |
| N1—C2—H2 | 125.2 | C10—C9—C8 | 120.40 (16) |
| C1—C2—H2 | 125.2 | C10—C9—H9 | 119.8 |
| N1—C3—N2 | 112.68 (14) | C8—C9—H9 | 119.8 |
| N1—C3—C5 | 125.95 (14) | C9—C10—C11 | 119.54 (16) |
| N2—C3—C5 | 121.28 (15) | C9—C10—H10 | 120.2 |
| N2—C4—H4A | 109.5 | C11—C10—H10 | 120.2 |
| N2—C4—H4B | 109.5 | C10—C11—C12 | 120.36 (17) |
| H4A—C4—H4B | 109.5 | C10—C11—H11 | 119.8 |
| N2—C4—H4C | 109.5 | C12—C11—H11 | 119.8 |
| H4A—C4—H4C | 109.5 | C11—C12—C7 | 120.16 (16) |
| H4B—C4—H4C | 109.5 | C11—C12—H12 | 119.9 |
| N3—C5—C3 | 118.90 (15) | C7—C12—H12 | 119.9 |
| N3—C5—H5 | 120.5 | C3—N1—C2 | 105.18 (14) |
| C3—C5—H5 | 120.5 | C3—N2—C1 | 104.12 (14) |
| O1—C6—C7 | 109.39 (14) | C3—N2—C4 | 126.14 (14) |
| O1—C6—H6A | 109.8 | C1—N2—C4 | 129.47 (13) |
| C7—C6—H6A | 109.8 | C5—N3—O1 | 110.01 (13) |
| O1—C6—H6B | 109.8 | O2—N4—O3 | 124.23 (14) |
| C7—C6—H6B | 109.8 | O2—N4—C1 | 119.68 (14) |
| H6A—C6—H6B | 108.2 | O3—N4—C1 | 116.09 (14) |
| C8—C7—C12 | 119.23 (15) | N3—O1—C6 | 107.65 (12) |
| C8—C7—C6 | 119.24 (16) | ||
| N2—C1—C2—N1 | 0.2 (2) | C1—C2—N1—C3 | −0.16 (19) |
| N4—C1—C2—N1 | 178.92 (15) | N1—C3—N2—C1 | 0.01 (19) |
| N1—C3—C5—N3 | −8.6 (3) | C5—C3—N2—C1 | 176.86 (15) |
| N2—C3—C5—N3 | 175.00 (15) | N1—C3—N2—C4 | 174.49 (15) |
| O1—C6—C7—C8 | 138.31 (16) | C5—C3—N2—C4 | −8.7 (2) |
| O1—C6—C7—C12 | −45.5 (2) | C2—C1—N2—C3 | −0.11 (18) |
| C12—C7—C8—C9 | −2.0 (3) | N4—C1—N2—C3 | −178.90 (15) |
| C6—C7—C8—C9 | 174.21 (16) | C2—C1—N2—C4 | −174.33 (16) |
| C7—C8—C9—C10 | 1.4 (3) | N4—C1—N2—C4 | 6.9 (3) |
| C8—C9—C10—C11 | 0.3 (3) | C3—C5—N3—O1 | 175.55 (14) |
| C9—C10—C11—C12 | −1.5 (3) | C2—C1—N4—O2 | −171.21 (18) |
| C10—C11—C12—C7 | 0.9 (3) | N2—C1—N4—O2 | 7.4 (3) |
| C8—C7—C12—C11 | 0.9 (3) | C2—C1—N4—O3 | 8.3 (3) |
| C6—C7—C12—C11 | −175.28 (16) | N2—C1—N4—O3 | −173.14 (16) |
| N2—C3—N1—C2 | 0.09 (19) | C5—N3—O1—C6 | −172.50 (15) |
| C5—C3—N1—C2 | −176.59 (16) | C7—C6—O1—N3 | 172.62 (14) |
| H··· | ||||
| C4—H4 | 0.98 | 2.51 | 3.466 (2) | 165 |
| C5—H5···O3ii | 0.95 | 2.65 | 3.175 (2) | 115 |
| C12H11FN4O3 | |
| Monoclinic, | Mo |
| Cell parameters from 7472 reflections | |
| θ = 3.1–27.5° | |
| µ = 0.12 mm−1 | |
| β = 102.988 (7)° | |
| Block, orange | |
| 0.19 × 0.13 × 0.10 mm |
| Rigaku Saturn724+ CCD diffractometer | 2292 reflections with |
| ω scans | |
| Absorption correction: multi-scan ( | θmax = 27.5°, θmin = 3.1° |
| 8522 measured reflections | |
| 2848 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2848 reflections | Δρmax = 0.29 e Å−3 |
| 182 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.40044 (15) | 0.59196 (9) | 0.16775 (9) | 0.0177 (2) | |
| C2 | 0.38559 (16) | 0.48697 (9) | 0.14129 (9) | 0.0192 (3) | |
| H2 | 0.3923 | 0.4590 | 0.0765 | 0.023* | |
| C3 | 0.35720 (15) | 0.49975 (9) | 0.29626 (9) | 0.0160 (2) | |
| C4 | 0.40828 (17) | 0.69554 (9) | 0.33328 (9) | 0.0213 (3) | |
| H4A | 0.3204 | 0.7499 | 0.3025 | 0.032* | |
| H4B | 0.5320 | 0.7228 | 0.3401 | 0.032* | |
| H4C | 0.3892 | 0.6769 | 0.4010 | 0.032* | |
| C5 | 0.32784 (15) | 0.46335 (9) | 0.39394 (9) | 0.0176 (2) | |
| H5 | 0.3457 | 0.3906 | 0.4109 | 0.021* | |
| C6 | 0.18665 (15) | 0.54029 (9) | 0.60895 (9) | 0.0185 (2) | |
| H6A | 0.0718 | 0.5716 | 0.5697 | 0.022* | |
| H6B | 0.2737 | 0.5984 | 0.6330 | 0.022* | |
| C7 | 0.15188 (14) | 0.47943 (9) | 0.69873 (9) | 0.0175 (2) | |
| C8 | 0.10500 (15) | 0.37210 (9) | 0.69078 (9) | 0.0201 (3) | |
| H8 | 0.1018 | 0.3354 | 0.6286 | 0.024* | |
| C9 | 0.06311 (16) | 0.31892 (10) | 0.77312 (10) | 0.0238 (3) | |
| H9 | 0.0328 | 0.2459 | 0.7684 | 0.029* | |
| C10 | 0.06662 (16) | 0.37454 (11) | 0.86169 (10) | 0.0249 (3) | |
| C11 | 0.11210 (17) | 0.48020 (11) | 0.87283 (9) | 0.0250 (3) | |
| H11 | 0.1132 | 0.5165 | 0.9350 | 0.030* | |
| C12 | 0.15620 (16) | 0.53179 (10) | 0.79027 (9) | 0.0210 (3) | |
| H12 | 0.1900 | 0.6043 | 0.7965 | 0.025* | |
| N1 | 0.36001 (13) | 0.42969 (8) | 0.22186 (7) | 0.0187 (2) | |
| N2 | 0.38326 (12) | 0.60100 (7) | 0.26758 (7) | 0.0160 (2) | |
| N3 | 0.27904 (12) | 0.52518 (8) | 0.45773 (7) | 0.0180 (2) | |
| N4 | 0.42710 (14) | 0.67827 (8) | 0.10515 (8) | 0.0225 (2) | |
| O1 | 0.26029 (11) | 0.46915 (6) | 0.54488 (6) | 0.01878 (19) | |
| O2 | 0.44180 (14) | 0.76801 (7) | 0.14148 (7) | 0.0315 (2) | |
| O3 | 0.43216 (14) | 0.65795 (8) | 0.01587 (7) | 0.0338 (2) | |
| F1 | 0.02098 (11) | 0.32309 (7) | 0.94206 (6) | 0.0378 (2) |
| C1 | 0.0181 (5) | 0.0188 (6) | 0.0166 (6) | 0.0022 (4) | 0.0048 (4) | 0.0022 (5) |
| C2 | 0.0219 (6) | 0.0197 (6) | 0.0162 (6) | 0.0018 (4) | 0.0051 (4) | −0.0009 (5) |
| C3 | 0.0138 (5) | 0.0155 (5) | 0.0181 (6) | 0.0007 (4) | 0.0022 (4) | 0.0002 (5) |
| C4 | 0.0275 (6) | 0.0157 (6) | 0.0215 (6) | −0.0017 (4) | 0.0071 (5) | −0.0037 (5) |
| C5 | 0.0177 (5) | 0.0164 (6) | 0.0184 (6) | −0.0011 (4) | 0.0030 (4) | 0.0005 (5) |
| C6 | 0.0188 (5) | 0.0187 (6) | 0.0185 (6) | 0.0011 (4) | 0.0055 (4) | −0.0031 (5) |
| C7 | 0.0121 (5) | 0.0208 (6) | 0.0189 (6) | 0.0023 (4) | 0.0022 (4) | 0.0004 (5) |
| C8 | 0.0180 (5) | 0.0211 (6) | 0.0206 (6) | 0.0016 (4) | 0.0031 (4) | −0.0007 (5) |
| C9 | 0.0214 (6) | 0.0211 (6) | 0.0286 (7) | 0.0017 (5) | 0.0049 (5) | 0.0053 (5) |
| C10 | 0.0212 (6) | 0.0328 (7) | 0.0217 (6) | 0.0045 (5) | 0.0067 (5) | 0.0111 (5) |
| C11 | 0.0237 (6) | 0.0342 (7) | 0.0174 (6) | 0.0031 (5) | 0.0053 (5) | −0.0008 (5) |
| C12 | 0.0188 (6) | 0.0221 (6) | 0.0218 (6) | 0.0010 (4) | 0.0037 (4) | −0.0012 (5) |
| N1 | 0.0203 (5) | 0.0175 (5) | 0.0181 (5) | 0.0003 (4) | 0.0042 (4) | −0.0013 (4) |
| N2 | 0.0164 (4) | 0.0146 (5) | 0.0172 (5) | 0.0012 (4) | 0.0041 (4) | 0.0005 (4) |
| N3 | 0.0170 (5) | 0.0200 (5) | 0.0167 (5) | −0.0001 (4) | 0.0032 (4) | 0.0030 (4) |
| N4 | 0.0237 (5) | 0.0212 (5) | 0.0243 (6) | 0.0027 (4) | 0.0092 (4) | 0.0038 (4) |
| O1 | 0.0230 (4) | 0.0186 (4) | 0.0164 (4) | 0.0026 (3) | 0.0077 (3) | 0.0022 (3) |
| O2 | 0.0468 (6) | 0.0176 (5) | 0.0332 (6) | −0.0032 (4) | 0.0158 (4) | 0.0013 (4) |
| O3 | 0.0537 (6) | 0.0307 (5) | 0.0217 (5) | 0.0033 (4) | 0.0182 (4) | 0.0037 (4) |
| F1 | 0.0437 (5) | 0.0446 (5) | 0.0286 (4) | 0.0027 (4) | 0.0158 (4) | 0.0162 (4) |
| C1—C2 | 1.3721 (16) | C6—H6A | 0.9900 |
| C1—N2 | 1.3789 (15) | C6—H6B | 0.9900 |
| C1—N4 | 1.4187 (15) | C7—C12 | 1.3890 (16) |
| C2—N1 | 1.3506 (15) | C7—C8 | 1.4005 (17) |
| C2—H2 | 0.9500 | C8—C9 | 1.3890 (17) |
| C3—N1 | 1.3382 (15) | C8—H8 | 0.9500 |
| C3—N2 | 1.3636 (15) | C9—C10 | 1.3757 (18) |
| C3—C5 | 1.4522 (16) | C9—H9 | 0.9500 |
| C4—N2 | 1.4721 (15) | C10—F1 | 1.3679 (14) |
| C4—H4A | 0.9800 | C10—C11 | 1.3791 (19) |
| C4—H4B | 0.9800 | C11—C12 | 1.3888 (17) |
| C4—H4C | 0.9800 | C11—H11 | 0.9500 |
| C5—N3 | 1.2731 (15) | C12—H12 | 0.9500 |
| C5—H5 | 0.9500 | N3—O1 | 1.4012 (12) |
| C6—O1 | 1.4393 (13) | N4—O2 | 1.2301 (14) |
| C6—C7 | 1.5013 (16) | N4—O3 | 1.2339 (14) |
| C2—C1—N2 | 108.14 (10) | C8—C7—C6 | 121.49 (11) |
| C2—C1—N4 | 127.25 (11) | C9—C8—C7 | 120.48 (11) |
| N2—C1—N4 | 124.60 (10) | C9—C8—H8 | 119.8 |
| N1—C2—C1 | 109.26 (10) | C7—C8—H8 | 119.8 |
| N1—C2—H2 | 125.4 | C10—C9—C8 | 118.41 (12) |
| C1—C2—H2 | 125.4 | C10—C9—H9 | 120.8 |
| N1—C3—N2 | 112.56 (10) | C8—C9—H9 | 120.8 |
| N1—C3—C5 | 119.63 (10) | F1—C10—C9 | 118.57 (12) |
| N2—C3—C5 | 127.81 (10) | F1—C10—C11 | 118.42 (12) |
| N2—C4—H4A | 109.5 | C9—C10—C11 | 123.01 (12) |
| N2—C4—H4B | 109.5 | C10—C11—C12 | 117.84 (12) |
| H4A—C4—H4B | 109.5 | C10—C11—H11 | 121.1 |
| N2—C4—H4C | 109.5 | C12—C11—H11 | 121.1 |
| H4A—C4—H4C | 109.5 | C11—C12—C7 | 121.26 (11) |
| H4B—C4—H4C | 109.5 | C11—C12—H12 | 119.4 |
| N3—C5—C3 | 122.53 (11) | C7—C12—H12 | 119.4 |
| N3—C5—H5 | 118.7 | C3—N1—C2 | 105.71 (10) |
| C3—C5—H5 | 118.7 | C3—N2—C1 | 104.31 (9) |
| O1—C6—C7 | 108.62 (9) | C3—N2—C4 | 126.92 (10) |
| O1—C6—H6A | 110.0 | C1—N2—C4 | 128.42 (10) |
| C7—C6—H6A | 110.0 | C5—N3—O1 | 110.43 (9) |
| O1—C6—H6B | 110.0 | O2—N4—O3 | 123.85 (11) |
| C7—C6—H6B | 110.0 | O2—N4—C1 | 119.16 (10) |
| H6A—C6—H6B | 108.3 | O3—N4—C1 | 116.99 (10) |
| C12—C7—C8 | 118.98 (11) | N3—O1—C6 | 107.89 (8) |
| C12—C7—C6 | 119.43 (10) | ||
| N2—C1—C2—N1 | −0.16 (13) | C5—C3—N1—C2 | 178.73 (10) |
| N4—C1—C2—N1 | −179.62 (11) | C1—C2—N1—C3 | 0.72 (13) |
| N1—C3—C5—N3 | −162.10 (10) | N1—C3—N2—C1 | 0.95 (12) |
| N2—C3—C5—N3 | 17.64 (18) | C5—C3—N2—C1 | −178.81 (11) |
| O1—C6—C7—C12 | 152.70 (10) | N1—C3—N2—C4 | −172.71 (10) |
| O1—C6—C7—C8 | −30.95 (14) | C5—C3—N2—C4 | 7.53 (18) |
| C12—C7—C8—C9 | 0.13 (16) | C2—C1—N2—C3 | −0.46 (12) |
| C6—C7—C8—C9 | −176.23 (10) | N4—C1—N2—C3 | 179.02 (10) |
| C7—C8—C9—C10 | 0.82 (17) | C2—C1—N2—C4 | 173.07 (10) |
| C8—C9—C10—F1 | 178.37 (10) | N4—C1—N2—C4 | −7.45 (18) |
| C8—C9—C10—C11 | −0.87 (18) | C3—C5—N3—O1 | 179.79 (9) |
| F1—C10—C11—C12 | −179.30 (10) | C2—C1—N4—O2 | −178.34 (11) |
| C9—C10—C11—C12 | −0.05 (18) | N2—C1—N4—O2 | 2.29 (17) |
| C10—C11—C12—C7 | 1.06 (18) | C2—C1—N4—O3 | 2.41 (18) |
| C8—C7—C12—C11 | −1.10 (17) | N2—C1—N4—O3 | −176.96 (11) |
| C6—C7—C12—C11 | 175.34 (10) | C5—N3—O1—C6 | −173.96 (9) |
| N2—C3—N1—C2 | −1.05 (13) | C7—C6—O1—N3 | 175.61 (8) |
| H··· | ||||
| C4—H4 | 0.98 | 2.29 | 3.0184 (15) | 131 |
| C4—H4 | 0.98 | 2.63 | 3.5693 (16) | 160 |
| C9—H9···N1ii | 0.95 | 2.58 | 3.4973 (16) | 163 |
| C2—H2···O3iii | 0.95 | 2.49 | 3.3165 (15) | 145 |
| C5—H5···O2iv | 0.95 | 2.63 | 3.1676 (14) | 116 |
| C6—H6 | 0.99 | 2.54 | 3.1376 (14) | 119 |
| C4—H4 | 0.98 | 2.77 | 3.353 (2) | 119 |
| C12H11BrN4O3 | |
| Monoclinic, | Mo |
| Cell parameters from 6837 reflections | |
| θ = 2.2–27.5° | |
| µ = 3.17 mm−1 | |
| β = 104.869 (2)° | |
| Block, yellow | |
| 0.66 × 0.52 × 0.24 mm |
| Rigaku Mercury CCD diffractometer | 2835 reflections with |
| ω scans | |
| Absorption correction: multi-scan ( | θmax = 27.5°, θmin = 2.2° |
| 16791 measured reflections | |
| 2974 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2974 reflections | Δρmax = 1.78 e Å−3 |
| 182 parameters | Δρmin = −1.03 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.4010 (4) | 0.5860 (2) | 0.1628 (2) | 0.0210 (6) | |
| C2 | 0.3825 (4) | 0.4812 (2) | 0.1385 (2) | 0.0227 (6) | |
| H2 | 0.3902 | 0.4517 | 0.0769 | 0.027* | |
| C3 | 0.3498 (4) | 0.4984 (2) | 0.2868 (2) | 0.0201 (6) | |
| C4 | 0.3974 (5) | 0.6933 (2) | 0.3184 (3) | 0.0281 (7) | |
| H4A | 0.3108 | 0.7457 | 0.2827 | 0.042* | |
| H4B | 0.5214 | 0.7210 | 0.3308 | 0.042* | |
| H4C | 0.3704 | 0.6770 | 0.3821 | 0.042* | |
| C5 | 0.3150 (4) | 0.4652 (2) | 0.3803 (2) | 0.0221 (6) | |
| H5 | 0.3120 | 0.3922 | 0.3932 | 0.026* | |
| C6 | 0.2011 (4) | 0.5460 (2) | 0.5916 (2) | 0.0227 (6) | |
| H6A | 0.0894 | 0.5833 | 0.5554 | 0.027* | |
| H6B | 0.2982 | 0.5986 | 0.6159 | 0.027* | |
| C7 | 0.1655 (4) | 0.4863 (2) | 0.6778 (2) | 0.0203 (6) | |
| C8 | 0.1233 (4) | 0.3798 (2) | 0.6718 (2) | 0.0229 (6) | |
| H8 | 0.1207 | 0.3422 | 0.6124 | 0.027* | |
| C9 | 0.0849 (4) | 0.3284 (2) | 0.7522 (2) | 0.0237 (6) | |
| H9 | 0.0561 | 0.2558 | 0.7481 | 0.028* | |
| C10 | 0.0890 (4) | 0.3840 (2) | 0.8382 (2) | 0.0224 (6) | |
| C11 | 0.1292 (4) | 0.4900 (2) | 0.8463 (2) | 0.0232 (6) | |
| H11 | 0.1300 | 0.5275 | 0.9055 | 0.028* | |
| C12 | 0.1683 (4) | 0.5400 (2) | 0.7656 (2) | 0.0232 (6) | |
| H12 | 0.1977 | 0.6126 | 0.7702 | 0.028* | |
| N1 | 0.3517 (4) | 0.42704 (18) | 0.21619 (19) | 0.0233 (5) | |
| N2 | 0.3819 (3) | 0.59752 (17) | 0.25814 (18) | 0.0191 (5) | |
| N3 | 0.2882 (3) | 0.52867 (18) | 0.44583 (19) | 0.0219 (5) | |
| N4 | 0.4338 (4) | 0.6687 (2) | 0.1020 (2) | 0.0234 (5) | |
| O1 | 0.2561 (3) | 0.47297 (15) | 0.52654 (16) | 0.0239 (5) | |
| O2 | 0.4605 (4) | 0.75804 (16) | 0.13734 (19) | 0.0325 (5) | |
| O3 | 0.4324 (4) | 0.64727 (19) | 0.01529 (19) | 0.0343 (6) | |
| Br1 | 0.04121 (4) | 0.31299 (2) | 0.94938 (2) | 0.02821 (16) |
| C1 | 0.0257 (14) | 0.0171 (12) | 0.0208 (14) | 0.0008 (10) | 0.0071 (11) | −0.0021 (10) |
| C2 | 0.0304 (15) | 0.0168 (12) | 0.0214 (15) | 0.0020 (10) | 0.0076 (12) | −0.0035 (10) |
| C3 | 0.0216 (13) | 0.0147 (11) | 0.0239 (15) | 0.0002 (10) | 0.0058 (11) | −0.0007 (10) |
| C4 | 0.0431 (19) | 0.0137 (13) | 0.0295 (18) | −0.0020 (11) | 0.0132 (15) | −0.0045 (10) |
| C5 | 0.0241 (14) | 0.0144 (11) | 0.0284 (16) | 0.0010 (10) | 0.0078 (12) | 0.0019 (10) |
| C6 | 0.0284 (15) | 0.0165 (12) | 0.0237 (15) | 0.0008 (10) | 0.0079 (12) | 0.0004 (10) |
| C7 | 0.0198 (13) | 0.0173 (12) | 0.0231 (15) | 0.0017 (10) | 0.0042 (11) | 0.0025 (10) |
| C8 | 0.0259 (14) | 0.0168 (12) | 0.0256 (15) | 0.0013 (10) | 0.0058 (11) | −0.0016 (10) |
| C9 | 0.0279 (15) | 0.0140 (11) | 0.0291 (17) | 0.0004 (10) | 0.0072 (12) | 0.0008 (11) |
| C10 | 0.0218 (14) | 0.0196 (13) | 0.0262 (15) | 0.0019 (10) | 0.0069 (11) | 0.0052 (10) |
| C11 | 0.0275 (15) | 0.0202 (13) | 0.0221 (15) | 0.0010 (11) | 0.0067 (12) | −0.0016 (10) |
| C12 | 0.0290 (15) | 0.0141 (12) | 0.0269 (16) | −0.0015 (10) | 0.0082 (12) | 0.0000 (10) |
| N1 | 0.0305 (13) | 0.0144 (10) | 0.0255 (13) | −0.0002 (9) | 0.0083 (10) | −0.0035 (9) |
| N2 | 0.0261 (12) | 0.0126 (10) | 0.0195 (12) | −0.0001 (8) | 0.0071 (9) | −0.0015 (9) |
| N3 | 0.0263 (12) | 0.0176 (10) | 0.0227 (13) | −0.0007 (9) | 0.0079 (10) | 0.0041 (9) |
| N4 | 0.0268 (13) | 0.0188 (11) | 0.0257 (14) | 0.0005 (9) | 0.0090 (11) | 0.0011 (10) |
| O1 | 0.0328 (12) | 0.0170 (9) | 0.0253 (12) | 0.0019 (8) | 0.0137 (9) | 0.0027 (8) |
| O2 | 0.0485 (14) | 0.0161 (10) | 0.0357 (13) | −0.0055 (9) | 0.0158 (11) | −0.0015 (9) |
| O3 | 0.0536 (15) | 0.0290 (12) | 0.0251 (13) | 0.0010 (11) | 0.0190 (11) | −0.0004 (10) |
| Br1 | 0.0366 (2) | 0.0231 (2) | 0.0267 (2) | 0.00051 (10) | 0.01133 (17) | 0.00691 (10) |
| C1—C2 | 1.377 (4) | C6—H6A | 0.9900 |
| C1—N2 | 1.378 (4) | C6—H6B | 0.9900 |
| C1—N4 | 1.413 (4) | C7—C8 | 1.393 (4) |
| C2—N1 | 1.352 (4) | C7—C12 | 1.394 (4) |
| C2—H2 | 0.9500 | C8—C9 | 1.389 (4) |
| C3—N1 | 1.341 (4) | C8—H8 | 0.9500 |
| C3—N2 | 1.366 (3) | C9—C10 | 1.383 (4) |
| C3—C5 | 1.453 (4) | C9—H9 | 0.9500 |
| C4—N2 | 1.468 (3) | C10—C11 | 1.384 (4) |
| C4—H4A | 0.9800 | C10—Br1 | 1.905 (3) |
| C4—H4B | 0.9800 | C11—C12 | 1.387 (4) |
| C4—H4C | 0.9800 | C11—H11 | 0.9500 |
| C5—N3 | 1.273 (4) | C12—H12 | 0.9500 |
| C5—H5 | 0.9500 | N3—O1 | 1.401 (3) |
| C6—O1 | 1.433 (4) | N4—O3 | 1.232 (4) |
| C6—C7 | 1.502 (4) | N4—O2 | 1.237 (3) |
| C2—C1—N2 | 108.0 (3) | C12—C7—C6 | 118.9 (2) |
| C2—C1—N4 | 126.9 (3) | C9—C8—C7 | 120.3 (3) |
| N2—C1—N4 | 125.1 (2) | C9—C8—H8 | 119.8 |
| N1—C2—C1 | 109.1 (3) | C7—C8—H8 | 119.8 |
| N1—C2—H2 | 125.4 | C10—C9—C8 | 119.4 (3) |
| C1—C2—H2 | 125.4 | C10—C9—H9 | 120.3 |
| N1—C3—N2 | 112.2 (3) | C8—C9—H9 | 120.3 |
| N1—C3—C5 | 119.7 (2) | C9—C10—C11 | 121.8 (3) |
| N2—C3—C5 | 128.1 (3) | C9—C10—Br1 | 119.4 (2) |
| N2—C4—H4A | 109.5 | C11—C10—Br1 | 118.8 (2) |
| N2—C4—H4B | 109.5 | C10—C11—C12 | 118.1 (3) |
| H4A—C4—H4B | 109.5 | C10—C11—H11 | 120.9 |
| N2—C4—H4C | 109.5 | C12—C11—H11 | 120.9 |
| H4A—C4—H4C | 109.5 | C11—C12—C7 | 121.5 (3) |
| H4B—C4—H4C | 109.5 | C11—C12—H12 | 119.2 |
| N3—C5—C3 | 123.6 (3) | C7—C12—H12 | 119.2 |
| N3—C5—H5 | 118.2 | C3—N1—C2 | 105.9 (2) |
| C3—C5—H5 | 118.2 | C3—N2—C1 | 104.7 (2) |
| O1—C6—C7 | 108.3 (2) | C3—N2—C4 | 126.7 (3) |
| O1—C6—H6A | 110.0 | C1—N2—C4 | 128.6 (2) |
| C7—C6—H6A | 110.0 | C5—N3—O1 | 110.1 (2) |
| O1—C6—H6B | 110.0 | O3—N4—O2 | 123.5 (3) |
| C7—C6—H6B | 110.0 | O3—N4—C1 | 117.4 (2) |
| H6A—C6—H6B | 108.4 | O2—N4—C1 | 119.1 (3) |
| C8—C7—C12 | 118.9 (3) | N3—O1—C6 | 108.3 (2) |
| C8—C7—C6 | 122.2 (3) | ||
| N2—C1—C2—N1 | 0.2 (3) | C5—C3—N1—C2 | 178.5 (3) |
| N4—C1—C2—N1 | −179.8 (3) | C1—C2—N1—C3 | 0.5 (3) |
| N1—C3—C5—N3 | −170.9 (3) | N1—C3—N2—C1 | 1.3 (3) |
| N2—C3—C5—N3 | 8.7 (5) | C5—C3—N2—C1 | −178.3 (3) |
| O1—C6—C7—C8 | −23.1 (4) | N1—C3—N2—C4 | −177.1 (3) |
| O1—C6—C7—C12 | 159.4 (3) | C5—C3—N2—C4 | 3.3 (5) |
| C12—C7—C8—C9 | −0.1 (4) | C2—C1—N2—C3 | −0.9 (3) |
| C6—C7—C8—C9 | −177.7 (3) | N4—C1—N2—C3 | 179.2 (3) |
| C7—C8—C9—C10 | 0.0 (5) | C2—C1—N2—C4 | 177.4 (3) |
| C8—C9—C10—C11 | 0.5 (5) | N4—C1—N2—C4 | −2.5 (5) |
| C8—C9—C10—Br1 | −178.8 (2) | C3—C5—N3—O1 | 179.2 (2) |
| C9—C10—C11—C12 | −0.9 (4) | C2—C1—N4—O3 | 6.0 (5) |
| Br1—C10—C11—C12 | 178.4 (2) | N2—C1—N4—O3 | −174.0 (3) |
| C10—C11—C12—C7 | 0.8 (4) | C2—C1—N4—O2 | −174.7 (3) |
| C8—C7—C12—C11 | −0.3 (4) | N2—C1—N4—O2 | 5.3 (4) |
| C6—C7—C12—C11 | 177.3 (3) | C5—N3—O1—C6 | −171.8 (2) |
| N2—C3—N1—C2 | −1.2 (3) | C7—C6—O1—N3 | 179.7 (2) |
| H··· | ||||
| C4—H4 | 0.98 | 2.24 | 2.997 (4) | 133 |
| C4—H4 | 0.98 | 2.62 | 3.499 (4) | 149 |
| C9—H9···N1ii | 0.95 | 2.77 | 3.681 (4) | 160 |
| C2—H2···O3iii | 0.95 | 2.44 | 3.282 (4) | 148 |
| C5—H5···O2iv | 0.95 | 2.64 | 3.341 (4) | 131 |
| C6—H6 | 0.99 | 2.63 | 3.254 (4) | 121 |
| C4—H4 | 0.98 | 2.85 | 3.491 (3) | 124 |