| Literature DB >> 29765726 |
Julio Zukerman-Schpector1, Monica Soto-Monsalve2, Regina H De Almeida Santos2, Ariel L L Garcia3, Carlos Roque D Correia3, Mukesh M Jotani4, Edward R T Tiekink5.
Abstract
In the title compound, C12H12N2O4, the di-hydro-pyrrole ring is almost planar (r.m.s. deviation = 0.0049 Å) and is nearly coplanar with the adjacent C2O2 residue [dihedral angle = 4.56 (9)°], which links to the 4-nitro-benzene substituent [dihedral angle = 4.58 (8)°]. The mol-ecule is concave, with the outer rings lying to the same side of the central C2O2 residue and being inclined to each other [dihedral angle = 8.30 (7)°]. In the crystal, supra-molecular layers parallel to (10-5) are sustained by nitro-benzene-C-H⋯O(carbon-yl) and pyrrole-C-H⋯O(nitro) inter-actions. The layers are connected into a three-dimensional architecture by π(pyrrole)-π(nitro-benzene) stacking [inter-centroid separation = 3.7414 (10) Å] and nitro-O⋯π(pyrrole) inter-actions.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; dihydropyrrole; ester; nitro-O⋯π interactions
Year: 2018 PMID: 29765726 PMCID: PMC5947806 DOI: 10.1107/S2056989018002451
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the N1/C1–C4 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4⋯O3i | 0.93 | 2.40 | 3.227 (2) | 149 |
| C12—H12⋯O1ii | 0.93 | 2.47 | 3.318 (2) | 152 |
| N2—O4⋯ | 1.22 (1) | 3.42 (1) | 3.6327 (16) | 90 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Molecular packing in (I): (a) view of the supramolecular layer parallel to (10) plane and (b) view of the unit-cell contents shown in projection down the b axis. The C—H⋯O, N—O⋯π and π–π contacts are shown as orange, blue and purple dashed lines, respectively.
Figure 3Two views of the Hirshfeld surface for (I) mapped over d norm in the range −0.225 to +1.393 au, showing intermolecular C—H⋯O contacts as black dashed lines.
Summary of short interatomic contacts (Å) in (I)
| Contact | Distance | Symmetry operation |
|---|---|---|
| O4⋯H3 | 2.47 |
|
| C5⋯C11 | 3.37 |
|
| C2⋯H11 | 2.81 |
|
| C3⋯H11 | 2.91 |
|
| C9⋯H1 | 2.92 |
|
Figure 4Views of Hirshfeld surfaces for (I) mapped: (a) over d norm in the range −0.225 to + 1.393 au, highlighting inter- and intra-layer C⋯C and C⋯H/H⋯C contacts as black and sky-blue dashed lines, respectively, and (b) over the electrostatic potential in the range ±0.077 au (the red and blue regions represent negative and positive electrostatic potentials, respectively), showing intermolecular N—O⋯π and π–π contacts as black dotted lines.
Figure 5(a) The full two-dimensional fingerprint plot for (I) and those delineated into (b) H⋯H, (c) O⋯H/H⋯O and (d) C⋯H/H⋯C contacts.
Percentage contributions of interatomic contacts to the Hirshfeld surface for (I)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 39.0 |
| O⋯H/H⋯O | 33.8 |
| C⋯H/H⋯C | 15.2 |
| C⋯O/O⋯C | 3.7 |
| C⋯C | 2.4 |
| C⋯N/N⋯C | 1.7 |
| O⋯O | 1.4 |
| N⋯H/H⋯N | 1.0 |
| N⋯O/O⋯N | 0.9 |
| N⋯N | 0.9 |
Experimental details
| Crystal data | |
| Chemical formula | C12H12N2O4 |
|
| 248.24 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 290 |
|
| 9.0385 (3), 12.2518 (4), 10.5452 (3) |
| β (°) | 96.102 (1) |
|
| 1161.14 (6) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.52 × 0.22 × 0.14 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.724, 0.745 |
| No. of measured, independent and observed [ | 23727, 2394, 2013 |
|
| 0.023 |
| (sin θ/λ)max (Å−1) | 0.627 |
| Refinement | |
|
| 0.041, 0.117, 1.09 |
| No. of reflections | 2394 |
| No. of parameters | 163 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.16, −0.18 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸), MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸).
| C12H12N2O4 | |
| Monoclinic, | Mo |
| Cell parameters from 9984 reflections | |
| θ = 2.6–26.5° | |
| µ = 0.11 mm−1 | |
| β = 96.102 (1)° | |
| Irregular, yellow | |
| 0.52 × 0.22 × 0.14 mm |
| Bruker APEXII CCD diffractometer | 2013 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1995) | θmax = 26.5°, θmin = 2.6° |
| 23727 measured reflections | |
| 2394 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2394 reflections | Δρmax = 0.16 e Å−3 |
| 163 parameters | Δρmin = −0.18 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.95640 (13) | 0.32527 (10) | 0.51064 (14) | 0.0665 (4) | |
| O2 | 0.73098 (11) | 0.38092 (8) | 0.41873 (11) | 0.0489 (3) | |
| O3 | 0.20267 (15) | 0.75353 (13) | 0.19648 (17) | 0.0896 (5) | |
| O4 | 0.34938 (16) | 0.88645 (10) | 0.24771 (15) | 0.0720 (4) | |
| N1 | 0.77129 (13) | 0.20438 (10) | 0.45899 (13) | 0.0468 (3) | |
| N2 | 0.32222 (15) | 0.78902 (12) | 0.24108 (13) | 0.0532 (3) | |
| C1 | 0.86033 (17) | 0.10688 (13) | 0.49447 (17) | 0.0514 (4) | |
| H1A | 0.8888 | 0.1046 | 0.5858 | 0.062* | |
| H1B | 0.9495 | 0.1052 | 0.4508 | 0.062* | |
| C2 | 0.75720 (19) | 0.01184 (14) | 0.45210 (19) | 0.0581 (4) | |
| H2A | 0.7987 | −0.0322 | 0.3881 | 0.070* | |
| H2B | 0.7401 | −0.0342 | 0.5239 | 0.070* | |
| C3 | 0.61637 (18) | 0.06612 (14) | 0.39787 (18) | 0.0558 (4) | |
| H3 | 0.5308 | 0.0292 | 0.3652 | 0.067* | |
| C4 | 0.62960 (16) | 0.17304 (13) | 0.40258 (16) | 0.0505 (4) | |
| H4 | 0.5549 | 0.2216 | 0.3725 | 0.061* | |
| C5 | 0.83046 (16) | 0.30513 (12) | 0.46670 (15) | 0.0443 (3) | |
| C6 | 0.78181 (17) | 0.49186 (12) | 0.42996 (17) | 0.0490 (4) | |
| H6A | 0.8665 | 0.5019 | 0.3819 | 0.059* | |
| H6B | 0.8127 | 0.5089 | 0.5186 | 0.059* | |
| C7 | 0.65706 (15) | 0.56621 (11) | 0.37923 (13) | 0.0400 (3) | |
| C8 | 0.51427 (16) | 0.52938 (12) | 0.33957 (14) | 0.0442 (3) | |
| H8 | 0.4927 | 0.4553 | 0.3436 | 0.053* | |
| C9 | 0.40373 (17) | 0.60201 (12) | 0.29406 (15) | 0.0445 (3) | |
| H9 | 0.3082 | 0.5774 | 0.2672 | 0.053* | |
| C10 | 0.43818 (16) | 0.71143 (12) | 0.28935 (13) | 0.0414 (3) | |
| C11 | 0.57881 (17) | 0.75032 (12) | 0.32932 (16) | 0.0481 (4) | |
| H11 | 0.5996 | 0.8246 | 0.3262 | 0.058* | |
| C12 | 0.68753 (17) | 0.67727 (12) | 0.37385 (16) | 0.0478 (4) | |
| H12 | 0.7828 | 0.7025 | 0.4007 | 0.057* |
| O1 | 0.0418 (6) | 0.0487 (7) | 0.1027 (10) | −0.0039 (5) | −0.0220 (6) | 0.0065 (6) |
| O2 | 0.0409 (6) | 0.0331 (5) | 0.0694 (7) | 0.0014 (4) | −0.0086 (5) | 0.0017 (4) |
| O3 | 0.0510 (8) | 0.0752 (10) | 0.1334 (14) | 0.0052 (7) | −0.0338 (8) | 0.0061 (9) |
| O4 | 0.0699 (9) | 0.0433 (7) | 0.0990 (10) | 0.0135 (6) | −0.0083 (7) | 0.0061 (6) |
| N1 | 0.0352 (6) | 0.0369 (6) | 0.0660 (8) | 0.0025 (5) | −0.0052 (5) | 0.0040 (6) |
| N2 | 0.0467 (8) | 0.0498 (8) | 0.0610 (8) | 0.0086 (6) | −0.0039 (6) | 0.0025 (6) |
| C1 | 0.0442 (8) | 0.0408 (8) | 0.0681 (10) | 0.0078 (6) | 0.0017 (7) | 0.0066 (7) |
| C2 | 0.0561 (10) | 0.0417 (8) | 0.0766 (11) | 0.0010 (7) | 0.0070 (8) | 0.0059 (8) |
| C3 | 0.0440 (8) | 0.0476 (9) | 0.0752 (11) | −0.0077 (7) | 0.0032 (8) | −0.0010 (8) |
| C4 | 0.0342 (8) | 0.0459 (8) | 0.0696 (10) | −0.0006 (6) | −0.0026 (7) | 0.0024 (7) |
| C5 | 0.0363 (7) | 0.0403 (8) | 0.0545 (8) | 0.0023 (6) | −0.0034 (6) | 0.0027 (6) |
| C6 | 0.0432 (8) | 0.0352 (7) | 0.0660 (10) | −0.0034 (6) | −0.0066 (7) | 0.0011 (7) |
| C7 | 0.0387 (7) | 0.0369 (7) | 0.0435 (7) | 0.0005 (6) | −0.0006 (6) | −0.0008 (6) |
| C8 | 0.0447 (8) | 0.0347 (7) | 0.0519 (8) | −0.0042 (6) | −0.0009 (6) | 0.0008 (6) |
| C9 | 0.0367 (7) | 0.0434 (8) | 0.0516 (8) | −0.0046 (6) | −0.0028 (6) | −0.0015 (6) |
| C10 | 0.0391 (7) | 0.0406 (8) | 0.0434 (7) | 0.0050 (6) | −0.0007 (6) | −0.0006 (6) |
| C11 | 0.0461 (8) | 0.0325 (7) | 0.0640 (9) | −0.0023 (6) | −0.0019 (7) | −0.0013 (6) |
| C12 | 0.0370 (8) | 0.0392 (8) | 0.0647 (9) | −0.0040 (6) | −0.0056 (7) | −0.0029 (7) |
| O1—C5 | 1.2080 (18) | C3—H3 | 0.9300 |
| O2—C5 | 1.3527 (17) | C4—H4 | 0.9300 |
| O2—C6 | 1.4356 (17) | C6—C7 | 1.503 (2) |
| O3—N2 | 1.2123 (18) | C6—H6A | 0.9700 |
| O4—N2 | 1.2193 (18) | C6—H6B | 0.9700 |
| N1—C5 | 1.3442 (19) | C7—C8 | 1.389 (2) |
| N1—C4 | 1.4070 (18) | C7—C12 | 1.391 (2) |
| N1—C1 | 1.4665 (18) | C8—C9 | 1.385 (2) |
| N2—C10 | 1.4656 (19) | C8—H8 | 0.9300 |
| C1—C2 | 1.528 (2) | C9—C10 | 1.378 (2) |
| C1—H1A | 0.9700 | C9—H9 | 0.9300 |
| C1—H1B | 0.9700 | C10—C11 | 1.381 (2) |
| C2—C3 | 1.495 (2) | C11—C12 | 1.374 (2) |
| C2—H2A | 0.9700 | C11—H11 | 0.9300 |
| C2—H2B | 0.9700 | C12—H12 | 0.9300 |
| C3—C4 | 1.316 (2) | ||
| C5—O2—C6 | 115.15 (11) | O1—C5—O2 | 124.40 (14) |
| C5—N1—C4 | 127.92 (13) | N1—C5—O2 | 111.31 (12) |
| C5—N1—C1 | 121.91 (12) | O2—C6—C7 | 108.85 (12) |
| C4—N1—C1 | 109.61 (12) | O2—C6—H6A | 109.9 |
| O3—N2—O4 | 122.62 (15) | C7—C6—H6A | 109.9 |
| O3—N2—C10 | 118.50 (14) | O2—C6—H6B | 109.9 |
| O4—N2—C10 | 118.88 (14) | C7—C6—H6B | 109.9 |
| N1—C1—C2 | 104.18 (12) | H6A—C6—H6B | 108.3 |
| N1—C1—H1A | 110.9 | C8—C7—C12 | 119.16 (13) |
| C2—C1—H1A | 110.9 | C8—C7—C6 | 123.24 (13) |
| N1—C1—H1B | 110.9 | C12—C7—C6 | 117.59 (12) |
| C2—C1—H1B | 110.9 | C9—C8—C7 | 120.57 (14) |
| H1A—C1—H1B | 108.9 | C9—C8—H8 | 119.7 |
| C3—C2—C1 | 103.94 (13) | C7—C8—H8 | 119.7 |
| C3—C2—H2A | 111.0 | C10—C9—C8 | 118.68 (13) |
| C1—C2—H2A | 111.0 | C10—C9—H9 | 120.7 |
| C3—C2—H2B | 111.0 | C8—C9—H9 | 120.7 |
| C1—C2—H2B | 111.0 | C9—C10—C11 | 121.93 (14) |
| H2A—C2—H2B | 109.0 | C9—C10—N2 | 119.17 (13) |
| C4—C3—C2 | 110.99 (14) | C11—C10—N2 | 118.90 (13) |
| C4—C3—H3 | 124.5 | C12—C11—C10 | 118.75 (14) |
| C2—C3—H3 | 124.5 | C12—C11—H11 | 120.6 |
| C3—C4—N1 | 111.26 (14) | C10—C11—H11 | 120.6 |
| C3—C4—H4 | 124.4 | C11—C12—C7 | 120.90 (13) |
| N1—C4—H4 | 124.4 | C11—C12—H12 | 119.5 |
| O1—C5—N1 | 124.29 (13) | C7—C12—H12 | 119.5 |
| C5—N1—C1—C2 | −171.59 (15) | O2—C6—C7—C12 | −175.74 (14) |
| C4—N1—C1—C2 | 0.51 (18) | C12—C7—C8—C9 | 0.6 (2) |
| N1—C1—C2—C3 | −0.98 (18) | C6—C7—C8—C9 | 179.78 (14) |
| C1—C2—C3—C4 | 1.2 (2) | C7—C8—C9—C10 | −0.2 (2) |
| C2—C3—C4—N1 | −0.9 (2) | C8—C9—C10—C11 | −0.4 (2) |
| C5—N1—C4—C3 | 171.74 (16) | C8—C9—C10—N2 | 179.85 (13) |
| C1—N1—C4—C3 | 0.2 (2) | O3—N2—C10—C9 | −6.2 (2) |
| C4—N1—C5—O1 | −175.78 (17) | O4—N2—C10—C9 | 173.50 (15) |
| C1—N1—C5—O1 | −5.2 (3) | O3—N2—C10—C11 | 174.03 (17) |
| C4—N1—C5—O2 | 4.1 (2) | O4—N2—C10—C11 | −6.2 (2) |
| C1—N1—C5—O2 | 174.65 (14) | C9—C10—C11—C12 | 0.6 (2) |
| C6—O2—C5—O1 | −3.7 (2) | N2—C10—C11—C12 | −179.62 (14) |
| C6—O2—C5—N1 | 176.46 (13) | C10—C11—C12—C7 | −0.2 (2) |
| C5—O2—C6—C7 | −176.99 (13) | C8—C7—C12—C11 | −0.4 (2) |
| O2—C6—C7—C8 | 5.1 (2) | C6—C7—C12—C11 | −179.60 (15) |
| H··· | ||||
| C4—H4···O3i | 0.93 | 2.40 | 3.227 (2) | 149 |
| C12—H12···O1ii | 0.93 | 2.47 | 3.318 (2) | 152 |
| N2—O4··· | 1.22 (1) | 3.42 (1) | 3.6327 (16) | 90 (1) |