| Literature DB >> 29765720 |
Wayland E Noland1, Ryan J Herzig1, Abigail J Engwall1, Renee C Jensen1, Kenneth J Tritch1.
Abstract
The title crystals, C9H5Br2NO2, are the first reported 2,6-dihalophenyl cyanide-isocyanide pair that have neither three- nor two-dimensional isomorphism. Both crystals contain contacts between the carbonyl O atom and a Br atom. In the crystal of the cyanide, R22(10) inversion dimers form based on C≡N⋯Br contacts, a common packing feature in this series of crystals. In the isocyanide, the corresponding N≡C⋯Br contacts are not observed. Instead, the iso-cyano C atom forms contacts with the meth-oxy C atom. RNC was refined as a two-component pseudo-merohedral twin.Entities:
Keywords: C=O⋯Br contacts; C≡N⋯Br contacts; N≡C⋯C contacts; crystal structure; isocyanide; nitrile
Year: 2018 PMID: 29765720 PMCID: PMC5947800 DOI: 10.1107/S2056989018002256
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The six pairs of 2,6-dihalophenyl cyanides (_a) and isocyanides (_b) previously reported in the CSD. All corresponding crystal pairs are either isomorphous or polytypic.
Figure 23,5-Dibromobenzoates (VII) and (VIII) in the CSD. We recently reported (IXa); isocyano acid (IXb) was not observed.
Figure 3The molecular structures of (a) RCN and (b) RNC, with atom labeling and displacement ellipsoids at the 50% probability level.
Contact geometry for RCN and RNC (Å, °)
|
|
|
|
|
|---|---|---|---|
| C1≡N1⋯Br2i | 1.138 (3) | 3.041 (3) | 128.6 (2) |
| C8=O1⋯Br6ii | 1.201 (3) | 3.025 (2) | 143.7 (2) |
| N11≡C17⋯C19iii | 1.162 (5) | 3.240 (6) | 112.9 (3) |
| C18=O11⋯Br16iv | 1.207 (5) | 3.133 (3) | 146.6 (3) |
Symmetry codes: (i) −x + 1, −y + 1, −z + 2; (ii) x + 1, −y + , z + ; (iii) x + , −y + , z + ; (iv) x + , −y + , z − .
Figure 4The sheet structure in a crystal of RCN, viewed along [100]. Dashed magenta lines represent short contacts.
Figure 5The sheet structure in a crystal of RCN, viewed along [503]. The same molecules are shown as in Fig. 4 ▸.
Figure 6A slice of a crystal of RNC parallel to (100), viewed nearly along [100].
Figure 7The synthesis of RCN and RNC.
Experimental details
| RCN | RNC | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C9H5Br2NO2 | C9H5Br2NO2 |
|
| 318.96 | 318.96 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 173 | 173 |
|
| 3.9273 (18), 17.881 (8), 14.739 (7) | 3.9233 (9), 13.554 (3), 18.672 (4) |
| β (°) | 93.757 (7) | 90.002 (3) |
|
| 1032.9 (8) | 992.9 (4) |
|
| 4 | 4 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 7.82 | 8.13 |
| Crystal size (mm) | 0.32 × 0.27 × 0.25 | 0.50 × 0.12 × 0.03 |
| Data collection | ||
| Diffractometer | Bruker APEXII CCD | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.414, 0.746 | 0.418, 0.746 |
| No. of measured, independent and observed [ | 11889, 2426, 2013 | 11400, 2277, 2132 |
|
| 0.043 | 0.053 |
| (sin θ/λ)max (Å−1) | 0.657 | 0.650 |
| Refinement | ||
|
| 0.026, 0.059, 1.07 | 0.029, 0.069, 1.02 |
| No. of reflections | 2426 | 2277 |
| No. of parameters | 128 | 129 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.37, −0.52 | 0.85, −0.65 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXT2014 (Sheldrick 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C9H5Br2NO2 | |
| Melting point: 410 K | |
| Monoclinic, | Mo |
| Cell parameters from 2977 reflections | |
| θ = 2.7–27.6° | |
| µ = 7.82 mm−1 | |
| β = 93.757 (7)° | |
| Block, colourless | |
| 0.32 × 0.27 × 0.25 mm | |
| Bruker APEXII CCD diffractometer | 2013 reflections with |
| Radiation source: sealed tube | |
| φ and ω scans | θmax = 27.8°, θmin = 1.8° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 11889 measured reflections | |
| 2426 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2426 reflections | Δρmax = 0.37 e Å−3 |
| 128 parameters | Δρmin = −0.52 e Å−3 |
| Experimental. Dr. K.J. Tritch / Prof. W.E. Noland |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.6370 (6) | 0.65590 (14) | 0.86321 (17) | 0.0196 (5) | |
| C2 | 0.7731 (6) | 0.67398 (14) | 0.95078 (16) | 0.0199 (5) | |
| Br2 | 0.74408 (8) | 0.60384 (2) | 1.04534 (2) | 0.02954 (9) | |
| C3 | 0.9245 (6) | 0.74304 (14) | 0.96807 (17) | 0.0204 (5) | |
| H3A | 1.0169 | 0.7548 | 1.0275 | 0.024* | |
| C4 | 0.9412 (6) | 0.79516 (14) | 0.89815 (17) | 0.0197 (5) | |
| C5 | 0.8100 (6) | 0.77825 (14) | 0.81049 (16) | 0.0193 (5) | |
| H5A | 0.8216 | 0.8138 | 0.7629 | 0.023* | |
| C6 | 0.6624 (6) | 0.70889 (15) | 0.79351 (16) | 0.0193 (5) | |
| Br6 | 0.49149 (7) | 0.68383 (2) | 0.67451 (2) | 0.02395 (9) | |
| C7 | 0.4695 (7) | 0.58481 (16) | 0.84529 (18) | 0.0251 (6) | |
| N1 | 0.3333 (6) | 0.52966 (14) | 0.82991 (16) | 0.0359 (6) | |
| C8 | 1.1066 (6) | 0.86917 (14) | 0.92064 (17) | 0.0203 (5) | |
| O1 | 1.2632 (5) | 0.88220 (11) | 0.99159 (14) | 0.0357 (5) | |
| O2 | 1.0590 (5) | 0.91760 (10) | 0.85308 (13) | 0.0292 (5) | |
| C9 | 1.2078 (8) | 0.99150 (15) | 0.8667 (2) | 0.0326 (7) | |
| H9A | 1.1628 | 1.0215 | 0.8115 | 0.049* | |
| H9B | 1.4548 | 0.9868 | 0.8798 | 0.049* | |
| H9C | 1.1063 | 1.0161 | 0.9179 | 0.049* |
| C1 | 0.0183 (13) | 0.0179 (13) | 0.0226 (13) | 0.0008 (11) | 0.0018 (10) | −0.0010 (11) |
| C2 | 0.0187 (13) | 0.0237 (14) | 0.0174 (12) | 0.0018 (11) | 0.0022 (10) | 0.0039 (10) |
| Br2 | 0.03760 (18) | 0.02881 (17) | 0.02189 (15) | −0.00681 (12) | −0.00044 (12) | 0.00724 (11) |
| C3 | 0.0225 (13) | 0.0220 (14) | 0.0164 (12) | 0.0024 (11) | −0.0001 (10) | −0.0013 (10) |
| C4 | 0.0174 (13) | 0.0198 (13) | 0.0219 (13) | 0.0036 (10) | 0.0021 (10) | −0.0002 (10) |
| C5 | 0.0213 (14) | 0.0189 (14) | 0.0177 (13) | 0.0009 (10) | 0.0011 (10) | 0.0011 (10) |
| C6 | 0.0164 (13) | 0.0256 (14) | 0.0158 (12) | 0.0028 (10) | 0.0002 (10) | −0.0029 (10) |
| Br6 | 0.02657 (15) | 0.02717 (16) | 0.01735 (14) | −0.00102 (11) | −0.00436 (10) | −0.00197 (10) |
| C7 | 0.0273 (15) | 0.0289 (16) | 0.0189 (13) | −0.0006 (12) | 0.0009 (11) | 0.0023 (11) |
| N1 | 0.0486 (17) | 0.0303 (15) | 0.0282 (13) | −0.0132 (12) | −0.0021 (11) | 0.0024 (11) |
| C8 | 0.0214 (13) | 0.0207 (14) | 0.0187 (13) | 0.0020 (11) | 0.0014 (10) | 0.0007 (10) |
| O1 | 0.0487 (13) | 0.0283 (11) | 0.0283 (11) | −0.0060 (10) | −0.0112 (10) | 0.0008 (9) |
| O2 | 0.0403 (12) | 0.0195 (10) | 0.0270 (10) | −0.0074 (9) | −0.0036 (9) | 0.0025 (8) |
| C9 | 0.0387 (17) | 0.0196 (15) | 0.0388 (17) | −0.0077 (12) | −0.0018 (13) | 0.0053 (12) |
| C1—C2 | 1.402 (4) | C5—H5A | 0.9500 |
| C1—C6 | 1.406 (4) | C6—Br6 | 1.890 (2) |
| C1—C7 | 1.448 (4) | C7—N1 | 1.138 (3) |
| C2—C3 | 1.387 (3) | C8—O1 | 1.201 (3) |
| C2—Br2 | 1.884 (3) | C8—O2 | 1.324 (3) |
| C3—C4 | 1.394 (3) | O2—C9 | 1.454 (3) |
| C3—H3A | 0.9500 | C9—H9A | 0.9800 |
| C4—C5 | 1.393 (3) | C9—H9B | 0.9800 |
| C4—C8 | 1.502 (4) | C9—H9C | 0.9800 |
| C5—C6 | 1.385 (4) | ||
| C2—C1—C6 | 118.4 (2) | C5—C6—C1 | 121.4 (2) |
| C2—C1—C7 | 120.8 (2) | C5—C6—Br6 | 119.93 (19) |
| C6—C1—C7 | 120.8 (2) | C1—C6—Br6 | 118.71 (19) |
| C3—C2—C1 | 120.5 (2) | N1—C7—C1 | 178.6 (3) |
| C3—C2—Br2 | 120.19 (19) | O1—C8—O2 | 124.6 (2) |
| C1—C2—Br2 | 119.32 (19) | O1—C8—C4 | 123.6 (2) |
| C2—C3—C4 | 120.0 (2) | O2—C8—C4 | 111.9 (2) |
| C2—C3—H3A | 120.0 | C8—O2—C9 | 117.1 (2) |
| C4—C3—H3A | 120.0 | O2—C9—H9A | 109.5 |
| C5—C4—C3 | 120.5 (2) | O2—C9—H9B | 109.5 |
| C5—C4—C8 | 121.6 (2) | H9A—C9—H9B | 109.5 |
| C3—C4—C8 | 117.8 (2) | O2—C9—H9C | 109.5 |
| C6—C5—C4 | 119.2 (2) | H9A—C9—H9C | 109.5 |
| C6—C5—H5A | 120.4 | H9B—C9—H9C | 109.5 |
| C4—C5—H5A | 120.4 | ||
| C6—C1—C2—C3 | 0.9 (4) | C4—C5—C6—Br6 | −178.62 (18) |
| C7—C1—C2—C3 | −178.1 (2) | C2—C1—C6—C5 | −1.6 (4) |
| C6—C1—C2—Br2 | −179.76 (18) | C7—C1—C6—C5 | 177.4 (2) |
| C7—C1—C2—Br2 | 1.2 (3) | C2—C1—C6—Br6 | 178.18 (18) |
| C1—C2—C3—C4 | 0.2 (4) | C7—C1—C6—Br6 | −2.8 (3) |
| Br2—C2—C3—C4 | −179.11 (18) | C5—C4—C8—O1 | −169.5 (3) |
| C2—C3—C4—C5 | −0.7 (4) | C3—C4—C8—O1 | 10.1 (4) |
| C2—C3—C4—C8 | 179.8 (2) | C5—C4—C8—O2 | 10.4 (3) |
| C3—C4—C5—C6 | 0.0 (4) | C3—C4—C8—O2 | −170.0 (2) |
| C8—C4—C5—C6 | 179.5 (2) | O1—C8—O2—C9 | 0.0 (4) |
| C4—C5—C6—C1 | 1.2 (4) | C4—C8—O2—C9 | −179.9 (2) |
| H··· | ||||
| C3—H3 | 0.95 | 2.97 | 3.878 (3) | 160 |
| C9H5Br2NO2 | |
| Melting point: 391 K | |
| Monoclinic, | Mo |
| Cell parameters from 2953 reflections | |
| θ = 2.2–27.4° | |
| µ = 8.13 mm−1 | |
| β = 90.002 (3)° | |
| Needle, colourless | |
| 0.50 × 0.12 × 0.03 mm | |
| Bruker APEXII CCD diffractometer | 2132 reflections with |
| Radiation source: sealed tube | |
| φ and ω scans | θmax = 27.5°, θmin = 1.1° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 11400 measured reflections | |
| 2277 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2277 reflections | Δρmax = 0.85 e Å−3 |
| 129 parameters | Δρmin = −0.65 e Å−3 |
| Experimental. Dr. K.J. Tritch / Prof. W.E. Noland |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component pseudo-merohedral twin in an 0.67:0.33 ratio. |
| C11 | 0.5312 (10) | 0.5930 (3) | 0.6880 (2) | 0.0187 (7) | |
| C12 | 0.6653 (9) | 0.5605 (2) | 0.6228 (2) | 0.0193 (7) | |
| Br12 | 0.85319 (11) | 0.43306 (2) | 0.61597 (2) | 0.02497 (11) | |
| C13 | 0.6606 (10) | 0.6211 (2) | 0.5634 (2) | 0.0216 (8) | |
| H13A | 0.7504 | 0.5983 | 0.5192 | 0.026* | |
| C14 | 0.5246 (10) | 0.7153 (2) | 0.56835 (19) | 0.0188 (8) | |
| C15 | 0.3900 (9) | 0.7501 (2) | 0.63284 (19) | 0.0185 (8) | |
| H15A | 0.2971 | 0.8147 | 0.6360 | 0.022* | |
| C16 | 0.3944 (9) | 0.6887 (3) | 0.69219 (18) | 0.0181 (7) | |
| Br16 | 0.21859 (11) | 0.73312 (2) | 0.78028 (2) | 0.02528 (11) | |
| N11 | 0.5307 (9) | 0.5321 (2) | 0.74742 (17) | 0.0240 (7) | |
| C17 | 0.5282 (15) | 0.4800 (3) | 0.7968 (2) | 0.0402 (11) | |
| C18 | 0.5255 (11) | 0.7760 (2) | 0.5011 (2) | 0.0210 (8) | |
| O11 | 0.6712 (9) | 0.75012 (19) | 0.44732 (15) | 0.0321 (7) | |
| O12 | 0.3467 (8) | 0.85902 (17) | 0.50681 (14) | 0.0270 (6) | |
| C19 | 0.3135 (13) | 0.9150 (3) | 0.4408 (2) | 0.0306 (9) | |
| H19A | 0.1794 | 0.9747 | 0.4498 | 0.046* | |
| H19B | 0.1984 | 0.8745 | 0.4046 | 0.046* | |
| H19C | 0.5404 | 0.9335 | 0.4234 | 0.046* |
| C11 | 0.0214 (19) | 0.0192 (16) | 0.0153 (18) | −0.0050 (15) | −0.0002 (15) | −0.0001 (14) |
| C12 | 0.0169 (19) | 0.0166 (15) | 0.0246 (19) | −0.0021 (13) | −0.0002 (18) | −0.0022 (13) |
| Br12 | 0.0280 (2) | 0.01584 (15) | 0.0310 (2) | 0.00238 (13) | 0.0011 (2) | −0.00255 (14) |
| C13 | 0.021 (2) | 0.0209 (16) | 0.0231 (19) | −0.0018 (15) | 0.0031 (16) | −0.0034 (14) |
| C14 | 0.023 (2) | 0.0176 (16) | 0.0160 (18) | −0.0025 (14) | 0.0008 (15) | −0.0007 (14) |
| C15 | 0.020 (2) | 0.0185 (15) | 0.0175 (19) | −0.0019 (13) | −0.0019 (15) | −0.0022 (13) |
| C16 | 0.0196 (19) | 0.0210 (16) | 0.0138 (16) | −0.0049 (14) | 0.0001 (14) | −0.0060 (13) |
| Br16 | 0.0296 (2) | 0.02670 (18) | 0.01950 (19) | −0.00182 (15) | 0.00484 (19) | −0.00694 (13) |
| N11 | 0.0310 (19) | 0.0198 (15) | 0.0213 (17) | −0.0029 (13) | 0.0011 (14) | −0.0014 (13) |
| C17 | 0.065 (3) | 0.028 (2) | 0.027 (2) | −0.008 (2) | −0.003 (2) | −0.0025 (19) |
| C18 | 0.027 (2) | 0.0172 (17) | 0.0187 (19) | −0.0031 (14) | −0.0015 (16) | −0.0021 (14) |
| O11 | 0.048 (2) | 0.0235 (12) | 0.0245 (15) | 0.0022 (14) | 0.0087 (16) | 0.0019 (10) |
| O12 | 0.0391 (17) | 0.0219 (12) | 0.0201 (13) | 0.0055 (12) | 0.0001 (13) | 0.0016 (10) |
| C19 | 0.039 (3) | 0.0269 (18) | 0.026 (2) | 0.0042 (19) | −0.003 (2) | 0.0071 (15) |
| C11—N11 | 1.383 (5) | C15—H15A | 0.9500 |
| C11—C12 | 1.396 (5) | C16—Br16 | 1.882 (3) |
| C11—C16 | 1.407 (5) | N11—C17 | 1.162 (5) |
| C12—C13 | 1.379 (5) | C18—O11 | 1.207 (5) |
| C12—Br12 | 1.883 (3) | C18—O12 | 1.331 (4) |
| C13—C14 | 1.387 (5) | O12—C19 | 1.454 (4) |
| C13—H13A | 0.9500 | C19—H19A | 0.9800 |
| C14—C15 | 1.397 (5) | C19—H19B | 0.9800 |
| C14—C18 | 1.501 (5) | C19—H19C | 0.9800 |
| C15—C16 | 1.386 (5) | ||
| N11—C11—C12 | 120.8 (3) | C15—C16—C11 | 120.9 (3) |
| N11—C11—C16 | 120.3 (3) | C15—C16—Br16 | 120.2 (3) |
| C12—C11—C16 | 118.9 (3) | C11—C16—Br16 | 118.9 (3) |
| C13—C12—C11 | 120.5 (3) | C17—N11—C11 | 179.1 (4) |
| C13—C12—Br12 | 119.8 (3) | O11—C18—O12 | 124.2 (4) |
| C11—C12—Br12 | 119.7 (3) | O11—C18—C14 | 122.6 (3) |
| C12—C13—C14 | 120.0 (3) | O12—C18—C14 | 113.2 (3) |
| C12—C13—H13A | 120.0 | C18—O12—C19 | 114.8 (3) |
| C14—C13—H13A | 120.0 | O12—C19—H19A | 109.5 |
| C13—C14—C15 | 120.9 (3) | O12—C19—H19B | 109.5 |
| C13—C14—C18 | 116.6 (3) | H19A—C19—H19B | 109.5 |
| C15—C14—C18 | 122.5 (3) | O12—C19—H19C | 109.5 |
| C16—C15—C14 | 118.8 (3) | H19A—C19—H19C | 109.5 |
| C16—C15—H15A | 120.6 | H19B—C19—H19C | 109.5 |
| C14—C15—H15A | 120.6 | ||
| N11—C11—C12—C13 | 179.1 (3) | C14—C15—C16—Br16 | 179.5 (3) |
| C16—C11—C12—C13 | −0.6 (6) | N11—C11—C16—C15 | −179.3 (4) |
| N11—C11—C12—Br12 | −0.8 (5) | C12—C11—C16—C15 | 0.4 (5) |
| C16—C11—C12—Br12 | 179.5 (3) | N11—C11—C16—Br16 | 1.1 (5) |
| C11—C12—C13—C14 | 0.6 (6) | C12—C11—C16—Br16 | −179.2 (3) |
| Br12—C12—C13—C14 | −179.5 (3) | C13—C14—C18—O11 | −8.6 (6) |
| C12—C13—C14—C15 | −0.3 (6) | C15—C14—C18—O11 | 172.4 (4) |
| C12—C13—C14—C18 | −179.3 (4) | C13—C14—C18—O12 | 170.5 (3) |
| C13—C14—C15—C16 | 0.0 (6) | C15—C14—C18—O12 | −8.5 (6) |
| C18—C14—C15—C16 | 179.0 (3) | O11—C18—O12—C19 | 4.8 (6) |
| C14—C15—C16—C11 | −0.1 (6) | C14—C18—O12—C19 | −174.2 (4) |