| Literature DB >> 29765719 |
Katharina Heintz1, Helmar Görls2, Wolfgang Imhof1.
Abstract
The title compound 2,2'-bipyridin-1'-ium 1-oxide bromide crystallizes as aEntities:
Keywords: bipyridine oxide; crystal structure; hydrate; hydrobromide
Year: 2018 PMID: 29765719 PMCID: PMC5947799 DOI: 10.1107/S2056989018002347
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Molecular structure of the cation of the title compound. Non-hydrogen atoms showing displacement ellipsoids with octand shading represent the major component of the two disordered cations.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H1 | 0.88 | 1.76 | 2.485 (4) | 138 |
| N2—H1 | 0.88 | 2.41 | 3.089 (5) | 134 |
| C1—H1⋯O1 | 0.95 | 2.22 | 3.138 (6) | 163 |
| C4—H4⋯Br1ii | 0.95 | 2.75 | 3.687 (10) | 167 |
| C7—H7⋯Br1ii | 0.95 | 2.86 | 3.769 (10) | 160 |
| C10—H10⋯O1 | 0.95 | 2.34 | 3.074 (5) | 134 |
| N2 | 0.88 | 1.81 | 2.500 (15) | 134 |
| N2 | 0.88 | 2.35 | 3.117 (18) | 146 |
| C1 | 0.95 | 2.09 | 2.979 (14) | 156 |
| C2 | 0.95 | 2.80 | 3.497 (15) | 131 |
| C4 | 0.95 | 2.77 | 3.70 (3) | 168 |
| C7 | 0.95 | 2.92 | 3.80 (3) | 155 |
| C10 | 0.95 | 2.40 | 3.246 (17) | 147 |
| O1 | 0.90 (3) | 2.47 (3) | 3.3475 (18) | 165 (3) |
| O1 | 0.84 (3) | 2.57 (3) | 3.3754 (17) | 160 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2Dimer of cations formed by N—H⋯O hydrogen bonds (Table 1 ▸). Hydrogen-bonded bromide anions and water molecules are also shown. Disorder of the cation is omitted for clarity.
Figure 3Zigzag chain of water molecules and bromide anions parallel to the b axis.
Experimental details
| Crystal data | |
| Chemical formula | C10H9N2O+·Br−·H2O |
|
| 271.12 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 133 |
|
| 5.7882 (1), 9.2095 (2), 20.2485 (4) |
| β (°) | 91.701 (1) |
|
| 1078.90 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 3.79 |
| Crystal size (mm) | 0.05 × 0.04 × 0.03 |
| Data collection | |
| Diffractometer | Nonius KappaCCD |
| Absorption correction | Multi-scan ( |
|
| 0.557, 0.746 |
| No. of measured, independent and observed [ | 12419, 2465, 2226 |
|
| 0.030 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
|
| 0.023, 0.052, 1.07 |
| No. of reflections | 2465 |
| No. of parameters | 190 |
| No. of restraints | 32 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.46, −0.51 |
Computer programs: COLLECT (Nonius, 1998 ▸), DENZO (Otwinowski & Minor, 1997 ▸), SHELXS97 (Sheldrick, 2008), SHELXL2018 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2006 ▸).
| C10H9N2O+·Br−·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 12419 reflections | |
| θ = 2.0–27.5° | |
| µ = 3.79 mm−1 | |
| β = 91.701 (1)° | |
| Prism, colourless | |
| 0.05 × 0.04 × 0.03 mm |
| Nonius KappaCCD diffractometer | 2465 independent reflections |
| Radiation source: fine-focus sealed tube | 2226 reflections with |
| Graphite monochromator | |
| phi– + ω–scan | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | |
| 12419 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2465 reflections | (Δ/σ)max = 0.001 |
| 190 parameters | Δρmax = 0.46 e Å−3 |
| 32 restraints | Δρmin = −0.51 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Br1 | −0.09302 (3) | 0.63110 (2) | 0.65415 (2) | 0.02577 (7) | |
| O1 | 0.0960 (3) | −0.0036 (2) | 0.43461 (9) | 0.0270 (5) | 0.717 (4) |
| N1 | 0.2649 (12) | 0.0073 (8) | 0.3908 (2) | 0.0199 (9) | 0.717 (4) |
| N2 | 0.3050 (9) | 0.1763 (6) | 0.5057 (2) | 0.0206 (7) | 0.717 (4) |
| H1N2 | 0.188837 | 0.116543 | 0.497651 | 0.025* | 0.717 (4) |
| C1 | 0.2378 (9) | −0.0729 (6) | 0.33445 (16) | 0.0236 (8) | 0.717 (4) |
| H1 | 0.103588 | −0.130999 | 0.327701 | 0.028* | 0.717 (4) |
| C2 | 0.4039 (8) | −0.0697 (6) | 0.2875 (2) | 0.0252 (9) | 0.717 (4) |
| H2 | 0.385065 | −0.126508 | 0.248510 | 0.030* | 0.717 (4) |
| C3 | 0.5987 (11) | 0.0160 (10) | 0.2967 (4) | 0.0254 (8) | 0.717 (4) |
| H3 | 0.716054 | 0.016114 | 0.264870 | 0.031* | 0.717 (4) |
| C4 | 0.620 (2) | 0.1013 (15) | 0.3526 (4) | 0.0211 (11) | 0.717 (4) |
| H4 | 0.748457 | 0.165180 | 0.358187 | 0.025* | 0.717 (4) |
| C5 | 0.4539 (15) | 0.0933 (9) | 0.4009 (4) | 0.0162 (9) | 0.717 (4) |
| C6 | 0.4718 (14) | 0.1856 (12) | 0.4606 (3) | 0.0174 (9) | 0.717 (4) |
| C7 | 0.6635 (19) | 0.2733 (8) | 0.4752 (5) | 0.0217 (11) | 0.717 (4) |
| H7 | 0.791700 | 0.274957 | 0.447024 | 0.026* | 0.717 (4) |
| C8 | 0.6624 (8) | 0.3582 (9) | 0.5321 (3) | 0.0254 (9) | 0.717 (4) |
| H8 | 0.783428 | 0.426128 | 0.540232 | 0.031* | 0.717 (4) |
| C9 | 0.4864 (8) | 0.3452 (6) | 0.5776 (3) | 0.0276 (11) | 0.717 (4) |
| H9 | 0.491253 | 0.398271 | 0.617799 | 0.033* | 0.717 (4) |
| C10 | 0.3066 (7) | 0.2532 (5) | 0.5621 (2) | 0.0254 (9) | 0.717 (4) |
| H10 | 0.182364 | 0.243774 | 0.591417 | 0.030* | 0.717 (4) |
| O1B | 0.1468 (8) | 0.1100 (5) | 0.5162 (2) | 0.0283 (14) | 0.283 (4) |
| N1B | 0.330 (3) | 0.1968 (18) | 0.5193 (7) | 0.0206 (7) | 0.283 (4) |
| N2B | 0.263 (3) | 0.018 (2) | 0.4059 (7) | 0.0199 (9) | 0.283 (4) |
| H2N2 | 0.165293 | 0.014377 | 0.438408 | 0.024* | 0.283 (4) |
| C1B | 0.361 (2) | 0.2832 (16) | 0.5724 (6) | 0.0254 (9) | 0.283 (4) |
| H1B | 0.251328 | 0.281476 | 0.606250 | 0.030* | 0.283 (4) |
| C2B | 0.546 (3) | 0.3722 (19) | 0.5783 (8) | 0.0276 (11) | 0.283 (4) |
| H2B | 0.556963 | 0.436182 | 0.615077 | 0.033* | 0.283 (4) |
| C3B | 0.716 (3) | 0.373 (3) | 0.5334 (10) | 0.0254 (9) | 0.283 (4) |
| H3B | 0.858710 | 0.421752 | 0.541526 | 0.031* | 0.283 (4) |
| C4B | 0.668 (5) | 0.299 (3) | 0.4753 (13) | 0.0217 (11) | 0.283 (4) |
| H4B | 0.756541 | 0.319587 | 0.437556 | 0.026* | 0.283 (4) |
| C5B | 0.493 (4) | 0.196 (3) | 0.4710 (10) | 0.0174 (9) | 0.283 (4) |
| C6B | 0.450 (4) | 0.112 (3) | 0.4118 (11) | 0.0162 (9) | 0.283 (4) |
| C7B | 0.607 (6) | 0.094 (4) | 0.3618 (13) | 0.0211 (11) | 0.283 (4) |
| H7B | 0.754015 | 0.139492 | 0.366763 | 0.025* | 0.283 (4) |
| C8B | 0.558 (3) | 0.015 (3) | 0.3049 (11) | 0.0254 (8) | 0.283 (4) |
| H8B | 0.657616 | 0.018628 | 0.268447 | 0.031* | 0.283 (4) |
| C9B | 0.361 (3) | −0.0716 (19) | 0.3024 (7) | 0.0252 (9) | 0.283 (4) |
| H9B | 0.324956 | −0.132271 | 0.265541 | 0.030* | 0.283 (4) |
| C10B | 0.224 (3) | −0.0649 (19) | 0.3544 (5) | 0.0236 (8) | 0.283 (4) |
| H10B | 0.089399 | −0.124292 | 0.353836 | 0.028* | 0.283 (4) |
| O1W | 0.1320 (3) | 0.31147 (18) | 0.70149 (8) | 0.0383 (4) | |
| H1W1 | 0.067 (6) | 0.400 (4) | 0.6970 (16) | 0.075 (10)* | |
| H2W1 | 0.117 (5) | 0.288 (3) | 0.7415 (16) | 0.064 (9)* |
| Br1 | 0.02760 (10) | 0.02744 (12) | 0.02241 (10) | 0.00035 (7) | 0.00334 (7) | 0.00392 (7) |
| O1 | 0.0252 (10) | 0.0336 (11) | 0.0225 (10) | −0.0067 (8) | 0.0068 (7) | −0.0001 (8) |
| N1 | 0.0208 (8) | 0.0207 (15) | 0.019 (3) | 0.0010 (8) | 0.0034 (18) | 0.002 (2) |
| N2 | 0.0220 (15) | 0.024 (2) | 0.016 (2) | −0.0026 (11) | 0.0018 (14) | −0.0009 (14) |
| C1 | 0.0280 (13) | 0.0231 (12) | 0.019 (2) | −0.0009 (10) | −0.006 (2) | −0.004 (2) |
| C2 | 0.030 (2) | 0.0272 (11) | 0.018 (2) | 0.0045 (15) | 0.0008 (13) | −0.0047 (17) |
| C3 | 0.022 (3) | 0.0337 (11) | 0.021 (2) | 0.0066 (19) | 0.0064 (15) | −0.0024 (15) |
| C4 | 0.0189 (17) | 0.0273 (17) | 0.017 (3) | 0.0011 (11) | 0.0040 (17) | 0.003 (2) |
| C5 | 0.0186 (8) | 0.015 (3) | 0.015 (3) | 0.0039 (14) | 0.0018 (16) | −0.0031 (14) |
| C6 | 0.0199 (18) | 0.0198 (19) | 0.012 (3) | 0.0021 (12) | −0.0014 (18) | 0.0032 (18) |
| C7 | 0.0259 (10) | 0.017 (3) | 0.0225 (9) | 0.000 (2) | 0.0028 (7) | 0.0005 (19) |
| C8 | 0.025 (3) | 0.025 (2) | 0.0259 (10) | −0.004 (2) | −0.005 (2) | −0.0014 (11) |
| C9 | 0.037 (3) | 0.028 (3) | 0.0183 (10) | 0.000 (2) | 0.0029 (19) | −0.0003 (15) |
| C10 | 0.030 (2) | 0.029 (2) | 0.0179 (18) | −0.0004 (15) | 0.0043 (14) | −0.0005 (14) |
| O1B | 0.025 (2) | 0.034 (3) | 0.026 (3) | −0.011 (2) | 0.0061 (19) | −0.004 (2) |
| N1B | 0.0220 (15) | 0.024 (2) | 0.016 (2) | −0.0026 (11) | 0.0018 (14) | −0.0009 (14) |
| N2B | 0.0208 (8) | 0.0207 (15) | 0.019 (3) | 0.0010 (8) | 0.0034 (18) | 0.002 (2) |
| C1B | 0.030 (2) | 0.029 (2) | 0.0179 (18) | −0.0004 (15) | 0.0043 (14) | −0.0005 (14) |
| C2B | 0.037 (3) | 0.028 (3) | 0.0183 (10) | 0.000 (2) | 0.0029 (19) | −0.0003 (15) |
| C3B | 0.025 (3) | 0.025 (2) | 0.0259 (10) | −0.004 (2) | −0.005 (2) | −0.0014 (11) |
| C4B | 0.0259 (10) | 0.017 (3) | 0.0225 (9) | 0.000 (2) | 0.0028 (7) | 0.0005 (19) |
| C5B | 0.0199 (18) | 0.0198 (19) | 0.012 (3) | 0.0021 (12) | −0.0014 (18) | 0.0032 (18) |
| C6B | 0.0186 (8) | 0.015 (3) | 0.015 (3) | 0.0039 (14) | 0.0018 (16) | −0.0031 (14) |
| C7B | 0.0189 (17) | 0.0273 (17) | 0.017 (3) | 0.0011 (11) | 0.0040 (17) | 0.003 (2) |
| C8B | 0.022 (3) | 0.0337 (11) | 0.021 (2) | 0.0066 (19) | 0.0064 (15) | −0.0024 (15) |
| C9B | 0.030 (2) | 0.0272 (11) | 0.018 (2) | 0.0045 (15) | 0.0008 (13) | −0.0047 (17) |
| C10B | 0.0280 (13) | 0.0231 (12) | 0.019 (2) | −0.0009 (10) | −0.006 (2) | −0.004 (2) |
| O1W | 0.0614 (10) | 0.0280 (8) | 0.0259 (8) | 0.0023 (8) | 0.0041 (7) | −0.0044 (7) |
| O1—N1 | 1.343 (6) | N1B—C1B | 1.345 (12) |
| N1—C5 | 1.361 (7) | N1B—C5B | 1.378 (19) |
| N1—C1 | 1.364 (4) | N2B—C10B | 1.307 (12) |
| N2—C10 | 1.344 (4) | N2B—C6B | 1.386 (19) |
| N2—C6 | 1.351 (7) | N2B—H2N2 | 0.8800 |
| N2—H1N2 | 0.8800 | C1B—C2B | 1.347 (11) |
| C1—C2 | 1.373 (4) | C1B—H1B | 0.9500 |
| C1—H1 | 0.9500 | C2B—C3B | 1.362 (17) |
| C2—C3 | 1.384 (7) | C2B—H2B | 0.9500 |
| C2—H2 | 0.9500 | C3B—C4B | 1.38 (2) |
| C3—C4 | 1.381 (8) | C3B—H3B | 0.9500 |
| C3—H3 | 0.9500 | C4B—C5B | 1.392 (19) |
| C4—C5 | 1.396 (7) | C4B—H4B | 0.9500 |
| C4—H4 | 0.9500 | C5B—C6B | 1.444 (12) |
| C5—C6 | 1.478 (4) | C6B—C7B | 1.390 (19) |
| C6—C7 | 1.397 (8) | C7B—C8B | 1.39 (2) |
| C7—C8 | 1.393 (8) | C7B—H7B | 0.9500 |
| C7—H7 | 0.9500 | C8B—C9B | 1.390 (17) |
| C8—C9 | 1.398 (6) | C8B—H8B | 0.9500 |
| C8—H8 | 0.9500 | C9B—C10B | 1.339 (11) |
| C9—C10 | 1.371 (4) | C9B—H9B | 0.9500 |
| C9—H9 | 0.9500 | C10B—H10B | 0.9500 |
| C10—H10 | 0.9500 | O1W—H1W1 | 0.90 (3) |
| O1B—N1B | 1.330 (12) | O1W—H2W1 | 0.84 (3) |
| O1—N1—C5 | 122.8 (4) | O1B—N1B—C5B | 121.8 (11) |
| O1—N1—C1 | 116.4 (5) | C1B—N1B—C5B | 119.5 (12) |
| C5—N1—C1 | 120.8 (5) | C10B—N2B—C6B | 123.3 (15) |
| C10—N2—C6 | 123.6 (4) | C10B—N2B—H2N2 | 118.4 |
| C10—N2—H1N2 | 118.2 | C6B—N2B—H2N2 | 118.4 |
| C6—N2—H1N2 | 118.2 | N1B—C1B—C2B | 121.2 (14) |
| N1—C1—C2 | 120.2 (5) | N1B—C1B—H1B | 119.4 |
| N1—C1—H1 | 119.9 | C2B—C1B—H1B | 119.4 |
| C2—C1—H1 | 119.9 | C1B—C2B—C3B | 122.1 (15) |
| C1—C2—C3 | 120.2 (4) | C1B—C2B—H2B | 119.0 |
| C1—C2—H2 | 119.9 | C3B—C2B—H2B | 119.0 |
| C3—C2—H2 | 119.9 | C2B—C3B—C4B | 115.9 (15) |
| C4—C3—C2 | 119.3 (5) | C2B—C3B—H3B | 122.1 |
| C4—C3—H3 | 120.4 | C4B—C3B—H3B | 122.1 |
| C2—C3—H3 | 120.4 | C3B—C4B—C5B | 121 (2) |
| C3—C4—C5 | 119.8 (7) | C3B—C4B—H4B | 119.4 |
| C3—C4—H4 | 120.1 | C5B—C4B—H4B | 119.4 |
| C5—C4—H4 | 120.1 | N1B—C5B—C4B | 117.6 (17) |
| N1—C5—C4 | 119.6 (5) | N1B—C5B—C6B | 119.0 (17) |
| N1—C5—C6 | 119.6 (6) | C4B—C5B—C6B | 121.9 (19) |
| C4—C5—C6 | 120.6 (7) | N2B—C6B—C7B | 113.1 (16) |
| N2—C6—C7 | 118.2 (6) | N2B—C6B—C5B | 121.5 (18) |
| N2—C6—C5 | 118.8 (6) | C7B—C6B—C5B | 124 (2) |
| C7—C6—C5 | 122.8 (7) | C8B—C7B—C6B | 123 (2) |
| C8—C7—C6 | 118.5 (8) | C8B—C7B—H7B | 118.5 |
| C8—C7—H7 | 120.7 | C6B—C7B—H7B | 118.5 |
| C6—C7—H7 | 120.7 | C7B—C8B—C9B | 118.6 (16) |
| C7—C8—C9 | 121.2 (5) | C7B—C8B—H8B | 120.7 |
| C7—C8—H8 | 119.4 | C9B—C8B—H8B | 120.7 |
| C9—C8—H8 | 119.4 | C10B—C9B—C8B | 116.8 (14) |
| C10—C9—C8 | 117.8 (5) | C10B—C9B—H9B | 121.6 |
| C10—C9—H9 | 121.1 | C8B—C9B—H9B | 121.6 |
| C8—C9—H9 | 121.1 | N2B—C10B—C9B | 124.2 (16) |
| N2—C10—C9 | 120.4 (4) | N2B—C10B—H10B | 117.9 |
| N2—C10—H10 | 119.8 | C9B—C10B—H10B | 117.9 |
| C9—C10—H10 | 119.8 | H1W1—O1W—H2W1 | 106 (3) |
| O1B—N1B—C1B | 118.7 (12) |
| H··· | ||||
| N2—H1 | 0.88 | 1.76 | 2.485 (4) | 138 |
| N2—H1 | 0.88 | 2.41 | 3.089 (5) | 134 |
| C1—H1···O1 | 0.95 | 2.22 | 3.138 (6) | 163 |
| C4—H4···Br1ii | 0.95 | 2.75 | 3.687 (10) | 167 |
| C7—H7···Br1ii | 0.95 | 2.86 | 3.769 (10) | 160 |
| C10—H10···O1 | 0.95 | 2.34 | 3.074 (5) | 134 |
| N2 | 0.88 | 1.81 | 2.500 (15) | 134 |
| N2 | 0.88 | 2.35 | 3.117 (18) | 146 |
| C1 | 0.95 | 2.09 | 2.979 (14) | 156 |
| C2 | 0.95 | 2.80 | 3.497 (15) | 131 |
| C4 | 0.95 | 2.77 | 3.70 (3) | 168 |
| C7 | 0.95 | 2.92 | 3.80 (3) | 155 |
| C10 | 0.95 | 2.40 | 3.246 (17) | 147 |
| O1 | 0.90 (3) | 2.47 (3) | 3.3475 (18) | 165 (3) |
| O1 | 0.84 (3) | 2.57 (3) | 3.3754 (17) | 160 (3) |