| Literature DB >> 29765715 |
Mir Abolfazl Naziri1, Ertan Şahin1, Tuncer Hökelek2.
Abstract
The asymmetric unit of the title aroyl hydrazone Schiff base salt, C13H12N3O2+·N O3-, consists of one mol-ecular cation in the keto tautomeric form, adopting an E configuration with respect to the azomethine bond, and one nitrate anion. The two units are linked via an N-H⋯O hydrogen bond. The mol-ecule overall is non-planar, with the pyridinium and benzene rings being inclined to each other by 4.21 (4)°. In the crystal, cations and anions are linked via inter-molecular O-H⋯O and bifurcated N-H⋯O hydrogen bonds, forming a two-dimensional network parallel to (101). These networks are further linked by C-H⋯O hydrogen bonds, forming slabs parallel to (101). The slabs are linked by offset π-π inter-actions, involving the benzene and pyridinium rings of adjacent slabs [inter-centroid distance = 3.610 (2) Å], forming a three-dimensional structure. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯O/O⋯H (45.1%), H⋯H (19.3%), H⋯C/C⋯H (14.5%), H⋯N/N⋯H (7.9%) and C⋯C (6.0%) inter-actions.Entities:
Keywords: Hirshfeld surface; Schiff base; aroyl hydrazone; crystal structure; hydrogen bonding; π–π interactions
Year: 2018 PMID: 29765715 PMCID: PMC5947795 DOI: 10.1107/S2056989018002141
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title aroyl hydrazone Schiff base salt, with the atom-numbering scheme. The N—HPym⋯ON (Pym = pyridinium and N = nitrate) hydrogen bond (see Table 1 ▸) is shown as a dashed line. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.96 (2) | 1.79 (2) | 2.742 (2) | 170 (2) |
| N1—H1 | 0.84 (2) | 2.25 (2) | 3.057 (2) | 161 (2) |
| N1—H1 | 0.84 (2) | 2.47 (2) | 3.174 (3) | 141 (2) |
| N3—H3 | 0.97 (2) | 1.80 (2) | 2.763 (2) | 178 (2) |
| C1—H1⋯O2i | 0.93 | 2.58 | 3.258 (2) | 130 |
| C8—H8⋯O4iii | 0.93 | 2.42 | 3.243 (2) | 148 |
| C10—H10⋯O1ii | 0.93 | 2.48 | 3.375 (2) | 162 |
| C11—H11⋯O5iv | 0.93 | 2.42 | 3.104 (3) | 130 |
| C12—H12⋯O3v | 0.93 | 2.34 | 3.191 (2) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Selected interatomic distances (Å)
| O1⋯H10i | 2.48 | C7⋯H1 | 2.72 (2) |
| O2⋯H1ii | 2.58 | H1⋯H1 | 2.28 |
| O2⋯H1 | 1.79 (2) | H1 | 2.25 (2) |
| O2⋯H4 | 2.52 | H1 | 2.47 (2) |
| O3⋯H3 | 2.48 (2) | H1 | 2.73 (2) |
| O3⋯H12 | 2.59 | H6⋯O4iii | 2.71 |
| O4⋯H3 | 1.80 (2) | H6⋯O5iii | 2.75 |
| N1⋯H6 | 2.59 | H6⋯N4iii | 2.81 |
| N2⋯H1 | 2.56 (2) | H6⋯H1 | 2.11 |
| N2⋯H10 | 2.62 | H8⋯O4iii | 2.42 |
| N4⋯H3 | 2.47 (2) | H8⋯H1 | 2.12 |
| C6⋯H1 | 2.61 (2) | H8⋯H13 | 2.46 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Part of the crystal structure, viewed normal to (101). The O—H⋯O and N—H⋯O hydrogen bonds (see Table 1 ▸) are shown as dashed lines, and C-bound H atoms have been omitted for clarity.
Figure 3A view along the b axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 ▸), and only H atoms involved in these interactions have been included.
Figure 4View of the three-dimensional Hirshfeld surface of the title aroyl hydrazone Schiff base salt plotted over d norm in the range −0.6521 to 1.7041 a.u.
Figure 5Hirshfeld surface of the title aroyl hydrazone Schiff base salt plotted over shape-index.
Figure 6The full two-dimensional fingerprint plots for the title aroyl hydrazone Schiff base salt, showing (a) all interactions, and delineated into (b) H⋯O/O⋯H, (c) H⋯H, (d) H⋯C/C⋯H, (e) H⋯N/N⋯H, (f) C⋯C, (g) C⋯N/N⋯C, (h) C⋯O/O⋯C, (i) O⋯O, (j) N⋯N and (k) N⋯O/O⋯N interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface contacts.
Figure 7The Hirshfeld surface representations with the function d norm plotted onto the surface for (a) H⋯O/O⋯H, (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯N/N⋯H, (e) C⋯C and (f) C⋯N/N⋯C interactions.
Experimental details
| Crystal data | |
| Chemical formula | C13H12N3O2 +·NO3 − |
|
| 304.27 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 8.335 (3), 13.929 (5), 12.184 (4) |
| β (°) | 95.902 (10) |
|
| 1407.1 (8) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.15 × 0.14 × 0.12 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.945, 0.976 |
| No. of measured, independent and observed [ | 44410, 3499, 2508 |
|
| 0.052 |
| (sin θ/λ)max (Å−1) | 0.669 |
| Refinement | |
|
| 0.049, 0.149, 1.04 |
| No. of reflections | 3499 |
| No. of parameters | 211 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.75, −0.25 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2015 ▸).
| C13H12N3O2+·NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9700 reflections |
| θ = 3.1–27.5° | |
| µ = 0.11 mm−1 | |
| β = 95.902 (10)° | Block, colourless |
| 0.15 × 0.14 × 0.12 mm | |
| Bruker APEXII CCD diffractometer | 3499 independent reflections |
| Radiation source: fine-focus sealed tube | 2508 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.4°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 44410 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3499 reflections | (Δ/σ)max < 0.001 |
| 211 parameters | Δρmax = 0.75 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 1.15687 (19) | 0.08055 (9) | 0.24127 (12) | 0.0576 (4) | |
| H1A | 1.207 (3) | 0.1109 (18) | 0.183 (2) | 0.080 (8)* | |
| O2 | 0.82328 (18) | 0.32288 (9) | 0.59284 (11) | 0.0549 (4) | |
| O3 | 0.3316 (2) | 0.99298 (10) | 0.57667 (11) | 0.0619 (4) | |
| O4 | 0.37385 (19) | 0.95570 (10) | 0.74819 (11) | 0.0595 (4) | |
| O5 | 0.22205 (19) | 1.07556 (11) | 0.69841 (15) | 0.0730 (5) | |
| N1 | 0.81569 (17) | 0.43407 (10) | 0.45738 (12) | 0.0392 (3) | |
| H1B | 0.830 (3) | 0.4512 (15) | 0.3928 (19) | 0.055 (6)* | |
| N2 | 0.74051 (16) | 0.49881 (10) | 0.51883 (11) | 0.0368 (3) | |
| N3 | 0.50122 (17) | 0.80177 (10) | 0.64341 (12) | 0.0408 (3) | |
| H3A | 0.456 (3) | 0.8548 (17) | 0.6811 (19) | 0.069 (7)* | |
| N4 | 0.30832 (18) | 1.00915 (10) | 0.67253 (13) | 0.0438 (4) | |
| C1 | 1.08209 (19) | 0.24460 (12) | 0.27240 (13) | 0.0367 (4) | |
| H1 | 1.1286 | 0.2655 | 0.2104 | 0.044* | |
| C2 | 1.0865 (2) | 0.14803 (12) | 0.30031 (14) | 0.0386 (4) | |
| C3 | 1.0173 (2) | 0.11743 (13) | 0.39341 (15) | 0.0452 (4) | |
| H3 | 1.0208 | 0.0528 | 0.4129 | 0.054* | |
| C4 | 0.9439 (2) | 0.18265 (12) | 0.45671 (14) | 0.0410 (4) | |
| H4 | 0.8980 | 0.1616 | 0.5189 | 0.049* | |
| C5 | 0.93716 (18) | 0.27990 (11) | 0.42900 (13) | 0.0334 (3) | |
| C6 | 1.00883 (18) | 0.30970 (12) | 0.33645 (13) | 0.0353 (4) | |
| H6 | 1.0073 | 0.3744 | 0.3176 | 0.042* | |
| C7 | 0.85500 (18) | 0.34613 (11) | 0.50025 (13) | 0.0352 (3) | |
| C8 | 0.7030 (2) | 0.57893 (12) | 0.47233 (14) | 0.0417 (4) | |
| H8 | 0.7236 | 0.5893 | 0.3997 | 0.050* | |
| C9 | 0.62801 (18) | 0.65447 (11) | 0.53250 (13) | 0.0347 (3) | |
| C10 | 0.56331 (19) | 0.63741 (12) | 0.63168 (14) | 0.0377 (4) | |
| H10 | 0.5629 | 0.5758 | 0.6610 | 0.045* | |
| C11 | 0.5004 (2) | 0.71264 (12) | 0.68521 (15) | 0.0402 (4) | |
| H11 | 0.4565 | 0.7019 | 0.7513 | 0.048* | |
| C12 | 0.5620 (2) | 0.82024 (12) | 0.54903 (15) | 0.0441 (4) | |
| H12 | 0.5613 | 0.8827 | 0.5221 | 0.053* | |
| C13 | 0.6257 (2) | 0.74791 (12) | 0.49147 (14) | 0.0401 (4) | |
| H13 | 0.6673 | 0.7610 | 0.4251 | 0.048* |
| O1 | 0.0805 (10) | 0.0412 (7) | 0.0580 (9) | −0.0054 (6) | 0.0395 (8) | −0.0132 (6) |
| O2 | 0.0797 (10) | 0.0457 (7) | 0.0451 (7) | 0.0120 (6) | 0.0345 (7) | 0.0058 (6) |
| O3 | 0.0884 (11) | 0.0562 (9) | 0.0452 (8) | 0.0093 (7) | 0.0264 (7) | 0.0067 (6) |
| O4 | 0.0837 (10) | 0.0566 (8) | 0.0401 (7) | 0.0142 (7) | 0.0156 (7) | −0.0006 (6) |
| O5 | 0.0723 (10) | 0.0593 (9) | 0.0875 (12) | 0.0217 (8) | 0.0090 (9) | −0.0260 (8) |
| N1 | 0.0496 (8) | 0.0387 (8) | 0.0316 (7) | 0.0066 (6) | 0.0145 (6) | −0.0011 (6) |
| N2 | 0.0385 (7) | 0.0374 (7) | 0.0360 (7) | 0.0026 (5) | 0.0107 (6) | −0.0047 (6) |
| N3 | 0.0446 (8) | 0.0330 (7) | 0.0466 (8) | 0.0026 (6) | 0.0132 (6) | −0.0013 (6) |
| N4 | 0.0502 (8) | 0.0359 (7) | 0.0473 (9) | −0.0017 (6) | 0.0142 (7) | −0.0056 (6) |
| C1 | 0.0379 (8) | 0.0441 (9) | 0.0296 (8) | −0.0016 (7) | 0.0103 (6) | −0.0001 (7) |
| C2 | 0.0416 (8) | 0.0398 (9) | 0.0364 (8) | −0.0050 (7) | 0.0134 (7) | −0.0096 (7) |
| C3 | 0.0586 (11) | 0.0329 (9) | 0.0479 (10) | −0.0051 (7) | 0.0236 (8) | −0.0023 (7) |
| C4 | 0.0500 (9) | 0.0389 (9) | 0.0373 (9) | −0.0059 (7) | 0.0198 (7) | −0.0004 (7) |
| C5 | 0.0327 (7) | 0.0369 (8) | 0.0315 (8) | −0.0005 (6) | 0.0080 (6) | −0.0027 (6) |
| C6 | 0.0355 (8) | 0.0375 (8) | 0.0340 (8) | 0.0018 (6) | 0.0085 (6) | 0.0034 (6) |
| C7 | 0.0359 (8) | 0.0368 (8) | 0.0343 (8) | −0.0011 (6) | 0.0104 (6) | −0.0018 (6) |
| C8 | 0.0496 (9) | 0.0437 (9) | 0.0333 (8) | 0.0058 (8) | 0.0110 (7) | −0.0005 (7) |
| C9 | 0.0346 (8) | 0.0363 (8) | 0.0334 (8) | 0.0004 (6) | 0.0046 (6) | −0.0009 (6) |
| C10 | 0.0421 (8) | 0.0314 (8) | 0.0412 (9) | −0.0028 (6) | 0.0113 (7) | 0.0022 (7) |
| C11 | 0.0434 (9) | 0.0373 (9) | 0.0422 (9) | −0.0030 (7) | 0.0154 (7) | 0.0006 (7) |
| C12 | 0.0522 (10) | 0.0350 (9) | 0.0464 (10) | 0.0042 (7) | 0.0106 (8) | 0.0088 (7) |
| C13 | 0.0449 (9) | 0.0425 (9) | 0.0342 (8) | 0.0030 (7) | 0.0096 (7) | 0.0070 (7) |
| O1—C2 | 1.354 (2) | C4—C3 | 1.376 (2) |
| O1—H1A | 0.96 (3) | C4—H4 | 0.9300 |
| O2—C7 | 1.228 (2) | C5—C4 | 1.396 (2) |
| O3—N4 | 1.224 (2) | C5—C6 | 1.393 (2) |
| O4—N4 | 1.264 (2) | C5—C7 | 1.482 (2) |
| N1—C7 | 1.359 (2) | C6—C1 | 1.379 (2) |
| N1—H1B | 0.84 (2) | C6—H6 | 0.9300 |
| N2—N1 | 1.3649 (19) | C8—H8 | 0.9300 |
| N2—C8 | 1.276 (2) | C9—C8 | 1.459 (2) |
| N3—C11 | 1.342 (2) | C9—C10 | 1.393 (2) |
| N3—C12 | 1.329 (2) | C9—C13 | 1.394 (2) |
| N3—H3A | 0.97 (2) | C10—C11 | 1.367 (2) |
| N4—O5 | 1.2325 (19) | C10—H10 | 0.9300 |
| C1—H1 | 0.9300 | C11—H11 | 0.9300 |
| C2—C1 | 1.387 (2) | C12—H12 | 0.9300 |
| C2—C3 | 1.391 (2) | C13—C12 | 1.366 (2) |
| C3—H3 | 0.9300 | C13—H13 | 0.9300 |
| O1···H10i | 2.48 | C7···H1Aii | 2.72 (2) |
| O2···H1ii | 2.58 | H1···H1A | 2.28 |
| O2···H1Aii | 1.79 (2) | H1B···O4iii | 2.25 (2) |
| O2···H4 | 2.52 | H1B···O5iii | 2.47 (2) |
| O3···H3A | 2.48 (2) | H1B···N4iii | 2.73 (2) |
| O3···H12 | 2.59 | H6···O4iii | 2.71 |
| O4···H3A | 1.80 (2) | H6···O5iii | 2.75 |
| N1···H6 | 2.59 | H6···N4iii | 2.81 |
| N2···H1Aii | 2.56 (2) | H6···H1B | 2.11 |
| N2···H10 | 2.62 | H8···O4iii | 2.42 |
| N4···H3A | 2.47 (2) | H8···H1B | 2.12 |
| C6···H1B | 2.61 (2) | H8···H13 | 2.46 |
| C2—O1—H1A | 109.6 (15) | C6—C5—C7 | 123.46 (15) |
| N2—N1—H1B | 116.3 (15) | C1—C6—C5 | 120.92 (15) |
| C7—N1—N2 | 119.41 (14) | C1—C6—H6 | 119.5 |
| C7—N1—H1B | 124.2 (15) | C5—C6—H6 | 119.5 |
| C8—N2—N1 | 116.08 (14) | O2—C7—N1 | 121.65 (15) |
| C11—N3—H3A | 120.6 (14) | O2—C7—C5 | 122.00 (15) |
| C12—N3—C11 | 121.66 (15) | N1—C7—C5 | 116.35 (14) |
| C12—N3—H3A | 117.7 (14) | N2—C8—C9 | 120.38 (15) |
| O3—N4—O4 | 119.23 (15) | N2—C8—H8 | 119.8 |
| O3—N4—O5 | 122.40 (17) | C9—C8—H8 | 119.8 |
| O5—N4—O4 | 118.37 (16) | C10—C9—C8 | 122.46 (15) |
| C2—C1—H1 | 120.0 | C10—C9—C13 | 118.54 (14) |
| C6—C1—C2 | 120.06 (14) | C13—C9—C8 | 118.96 (15) |
| C6—C1—H1 | 120.0 | C9—C10—H10 | 120.5 |
| O1—C2—C1 | 123.03 (15) | C11—C10—C9 | 119.00 (15) |
| O1—C2—C3 | 117.33 (16) | C11—C10—H10 | 120.5 |
| C1—C2—C3 | 119.64 (15) | N3—C11—C10 | 120.71 (16) |
| C2—C3—H3 | 120.0 | N3—C11—H11 | 119.6 |
| C4—C3—C2 | 120.02 (16) | C10—C11—H11 | 119.6 |
| C4—C3—H3 | 120.0 | N3—C12—C13 | 120.30 (16) |
| C3—C4—C5 | 120.96 (15) | N3—C12—H12 | 119.9 |
| C3—C4—H4 | 119.5 | C13—C12—H12 | 119.9 |
| C5—C4—H4 | 119.5 | C9—C13—H13 | 120.1 |
| C4—C5—C7 | 118.16 (14) | C12—C13—C9 | 119.79 (15) |
| C6—C5—C4 | 118.38 (14) | C12—C13—H13 | 120.1 |
| N2—N1—C7—O2 | 0.7 (2) | C7—C5—C6—C1 | −179.26 (15) |
| N2—N1—C7—C5 | −179.66 (13) | C4—C5—C7—O2 | 15.3 (2) |
| C8—N2—N1—C7 | −178.09 (15) | C4—C5—C7—N1 | −164.34 (15) |
| N1—N2—C8—C9 | −177.58 (14) | C6—C5—C7—O2 | −164.23 (16) |
| C12—N3—C11—C10 | 0.3 (3) | C6—C5—C7—N1 | 16.1 (2) |
| C11—N3—C12—C13 | 0.1 (3) | C5—C6—C1—C2 | −0.6 (2) |
| O1—C2—C1—C6 | −179.76 (15) | C10—C9—C8—N2 | −13.9 (3) |
| C3—C2—C1—C6 | −0.3 (3) | C13—C9—C8—N2 | 163.87 (16) |
| O1—C2—C3—C4 | −179.94 (17) | C8—C9—C10—C11 | 177.61 (16) |
| C1—C2—C3—C4 | 0.6 (3) | C13—C9—C10—C11 | −0.1 (2) |
| C5—C4—C3—C2 | 0.0 (3) | C8—C9—C13—C12 | −177.27 (16) |
| C6—C5—C4—C3 | −0.9 (3) | C10—C9—C13—C12 | 0.6 (2) |
| C7—C5—C4—C3 | 179.50 (16) | C9—C10—C11—N3 | −0.3 (3) |
| C4—C5—C6—C1 | 1.2 (2) | C9—C13—C12—N3 | −0.6 (3) |
| H··· | ||||
| O1—H1 | 0.96 (2) | 1.79 (2) | 2.742 (2) | 170 (2) |
| N1—H1 | 0.84 (2) | 2.25 (2) | 3.057 (2) | 161 (2) |
| N1—H1 | 0.84 (2) | 2.47 (2) | 3.174 (3) | 141 (2) |
| N3—H3 | 0.97 (2) | 1.80 (2) | 2.763 (2) | 178 (2) |
| C1—H1···O2i | 0.93 | 2.58 | 3.258 (2) | 130 |
| C8—H8···O4iii | 0.93 | 2.42 | 3.243 (2) | 148 |
| C10—H10···O1ii | 0.93 | 2.48 | 3.375 (2) | 162 |
| C11—H11···O5iv | 0.93 | 2.42 | 3.104 (3) | 130 |
| C12—H12···O3v | 0.93 | 2.34 | 3.191 (2) | 152 |