| Literature DB >> 29765710 |
Flavien A A Toze1, Anna V Listratova2, Leonid G Voskressensky2, Natalia Yu Chernikova3, Nikolai N Lobanov4, Alexey N Bilyachenko4, Pavel V Dorovatovskii5.
Abstract
The title compound, C20H23FN2O4, is the product of a ring-expansion reaction from a seven-membered fluorinatedEntities:
Keywords: Alzheimer disease; azoninoindoles; crystal structure; natural alkaloids; synchrotron radiation
Year: 2018 PMID: 29765710 PMCID: PMC5947790 DOI: 10.1107/S2056989018001329
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The synthesis of dimethyl 4-ethyl-11-fluoro-1,4,5,6,7,8-hexahydroazonino[5,6-b]indole-2,3-dicarboxylate I in methanol.
Figure 2The molecular structure of I. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N8—H8⋯O1i | 0.93 (3) | 2.17 (3) | 3.025 (3) | 153 (2) |
Symmetry code: (i) .
Figure 3The crystal packing of I viewed along the a-axis direction showing the zigzag chains along [010]. Dashed lines indicate intermolecular N—H⋯O hydrogen bonds.
Experimental details
| Crystal data | |
| Chemical formula | C20H23FN2O4 |
|
| 374.40 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.4632 (17), 10.993 (2), 20.520 (4) |
| β (°) | 99.60 (3) |
|
| 1882.4 (7) |
|
| 4 |
| Radiation type | Synchrotron, λ = 0.96990 Å |
| μ (mm−1) | 0.21 |
| Crystal size (mm) | 0.22 × 0.02 × 0.02 |
| Data collection | |
| Diffractometer | Rayonix SX165 CCD |
| Absorption correction | Multi-scan ( |
|
| 0.940, 0.980 |
| No. of measured, independent and observed [ | 21117, 3850, 2463 |
|
| 0.086 |
| (sin θ/λ)max (Å−1) | 0.640 |
| Refinement | |
|
| 0.072, 0.184, 1.01 |
| No. of reflections | 3850 |
| No. of parameters | 251 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.34, −0.43 |
Computer programs: MarCCD (Doyle, 2011 ▸), i MOSFLM (Battye et al., 2011 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸) and SHELXTL (Sheldrick, 2008 ▸).
| C20H23FN2O4 | |
| Monoclinic, | Synchrotron radiation, λ = 0.96990 Å |
| Cell parameters from 600 reflections | |
| θ = 3.3–33.0° | |
| µ = 0.21 mm−1 | |
| β = 99.60 (3)° | |
| Needle, yellow | |
| 0.22 × 0.02 × 0.02 mm |
| Rayonix SX165 CCD diffractometer | 2463 reflections with |
| /f scan | |
| Absorption correction: multi-scan ( | θmax = 38.4°, θmin = 3.3° |
| 21117 measured reflections | |
| 3850 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3850 reflections | Δρmax = 0.34 e Å−3 |
| 251 parameters | Δρmin = −0.43 e Å−3 |
| 0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: difference Fourier map | Extinction coefficient: 0.016 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| F1 | −0.11330 (17) | 0.18565 (15) | 0.14176 (8) | 0.0428 (5) | |
| O1 | 0.35878 (18) | 0.12235 (17) | 0.40043 (8) | 0.0254 (5) | |
| O2 | 0.13856 (17) | 0.24026 (16) | 0.37589 (8) | 0.0256 (5) | |
| O3 | 0.72767 (18) | 0.17340 (16) | 0.45020 (8) | 0.0265 (5) | |
| O4 | 0.54751 (18) | 0.24913 (16) | 0.50997 (7) | 0.0245 (5) | |
| C1 | 0.3100 (3) | 0.4423 (2) | 0.33722 (11) | 0.0220 (6) | |
| H1A | 0.1961 | 0.4424 | 0.3430 | 0.026* | |
| H1B | 0.3592 | 0.5174 | 0.3581 | 0.026* | |
| C2 | 0.3917 (3) | 0.3338 (2) | 0.37585 (11) | 0.0197 (6) | |
| C3 | 0.5500 (3) | 0.3353 (2) | 0.40360 (11) | 0.0197 (6) | |
| N4 | 0.6592 (2) | 0.41914 (19) | 0.38442 (9) | 0.0215 (5) | |
| C5 | 0.7014 (3) | 0.3978 (2) | 0.31780 (11) | 0.0225 (6) | |
| H5A | 0.6179 | 0.3459 | 0.2920 | 0.027* | |
| H5B | 0.8041 | 0.3528 | 0.3229 | 0.027* | |
| C6 | 0.7174 (3) | 0.5148 (2) | 0.27897 (12) | 0.0265 (6) | |
| H6A | 0.7461 | 0.4933 | 0.2356 | 0.032* | |
| H6B | 0.8060 | 0.5642 | 0.3032 | 0.032* | |
| C7 | 0.5632 (3) | 0.5921 (3) | 0.26769 (12) | 0.0249 (6) | |
| H7A | 0.5426 | 0.6237 | 0.3107 | 0.030* | |
| H7B | 0.5783 | 0.6625 | 0.2393 | 0.030* | |
| C7A | 0.4212 (3) | 0.5196 (2) | 0.23562 (11) | 0.0214 (6) | |
| N8 | 0.3906 (2) | 0.5038 (2) | 0.16787 (9) | 0.0229 (5) | |
| H8 | 0.437 (3) | 0.547 (2) | 0.1368 (12) | 0.028* | |
| C8A | 0.2622 (3) | 0.4257 (2) | 0.15110 (11) | 0.0225 (6) | |
| C9 | 0.1871 (3) | 0.3838 (2) | 0.08913 (12) | 0.0268 (6) | |
| H9 | 0.2220 | 0.4098 | 0.0497 | 0.032* | |
| C10 | 0.0602 (3) | 0.3033 (3) | 0.08712 (13) | 0.0299 (7) | |
| H10 | 0.0070 | 0.2722 | 0.0461 | 0.036* | |
| C11 | 0.0114 (3) | 0.2683 (3) | 0.14629 (13) | 0.0283 (6) | |
| C12 | 0.0805 (3) | 0.3085 (2) | 0.20795 (12) | 0.0248 (6) | |
| H12 | 0.0424 | 0.2828 | 0.2467 | 0.030* | |
| C12A | 0.2112 (2) | 0.3900 (2) | 0.21103 (11) | 0.0214 (6) | |
| C12B | 0.3143 (3) | 0.4501 (2) | 0.26446 (11) | 0.0201 (6) | |
| C13 | 0.2988 (3) | 0.2225 (3) | 0.38597 (11) | 0.0221 (6) | |
| C14 | 0.0434 (3) | 0.1308 (3) | 0.38115 (13) | 0.0292 (7) | |
| H14A | 0.0642 | 0.0713 | 0.3480 | 0.044* | |
| H14B | −0.0707 | 0.1519 | 0.3735 | 0.044* | |
| H14C | 0.0730 | 0.0958 | 0.4254 | 0.044* | |
| C15 | 0.6182 (3) | 0.2417 (2) | 0.45594 (11) | 0.0212 (6) | |
| C16 | 0.5946 (3) | 0.1559 (3) | 0.55942 (12) | 0.0295 (7) | |
| H16A | 0.5529 | 0.0769 | 0.5422 | 0.044* | |
| H16B | 0.5509 | 0.1755 | 0.5995 | 0.044* | |
| H16C | 0.7118 | 0.1522 | 0.5700 | 0.044* | |
| C17 | 0.7970 (3) | 0.4562 (3) | 0.43429 (11) | 0.0248 (6) | |
| H17A | 0.8687 | 0.5087 | 0.4131 | 0.030* | |
| H17B | 0.8583 | 0.3829 | 0.4514 | 0.030* | |
| C18 | 0.7454 (3) | 0.5244 (3) | 0.49167 (13) | 0.0317 (7) | |
| H18A | 0.6843 | 0.5969 | 0.4750 | 0.048* | |
| H18B | 0.8404 | 0.5489 | 0.5230 | 0.048* | |
| H18C | 0.6782 | 0.4714 | 0.5140 | 0.048* |
| F1 | 0.0287 (8) | 0.0431 (12) | 0.0508 (10) | −0.0170 (7) | −0.0099 (7) | 0.0069 (8) |
| O1 | 0.0152 (8) | 0.0275 (12) | 0.0328 (10) | 0.0029 (8) | 0.0016 (7) | 0.0025 (8) |
| O2 | 0.0108 (8) | 0.0301 (12) | 0.0356 (10) | −0.0008 (7) | 0.0034 (7) | 0.0043 (8) |
| O3 | 0.0172 (8) | 0.0318 (12) | 0.0300 (10) | 0.0066 (7) | 0.0024 (7) | 0.0008 (8) |
| O4 | 0.0215 (9) | 0.0338 (12) | 0.0189 (9) | 0.0030 (7) | 0.0052 (6) | 0.0043 (8) |
| C1 | 0.0127 (11) | 0.0284 (17) | 0.0241 (13) | 0.0018 (10) | 0.0003 (9) | 0.0018 (11) |
| C2 | 0.0133 (11) | 0.0260 (16) | 0.0195 (12) | −0.0001 (10) | 0.0016 (9) | 0.0000 (10) |
| C3 | 0.0147 (11) | 0.0262 (16) | 0.0181 (11) | 0.0016 (10) | 0.0020 (8) | −0.0007 (10) |
| N4 | 0.0135 (9) | 0.0308 (14) | 0.0194 (10) | −0.0041 (9) | 0.0006 (7) | 0.0001 (9) |
| C5 | 0.0147 (11) | 0.0326 (17) | 0.0198 (12) | 0.0000 (10) | 0.0018 (9) | −0.0001 (11) |
| C6 | 0.0165 (12) | 0.0375 (18) | 0.0243 (13) | −0.0068 (11) | 0.0005 (9) | 0.0023 (12) |
| C7 | 0.0205 (12) | 0.0309 (17) | 0.0222 (13) | −0.0044 (11) | 0.0004 (10) | 0.0032 (11) |
| C7A | 0.0182 (12) | 0.0251 (16) | 0.0196 (13) | 0.0021 (10) | −0.0007 (9) | 0.0005 (11) |
| N8 | 0.0173 (10) | 0.0313 (15) | 0.0190 (11) | −0.0035 (9) | 0.0000 (8) | 0.0028 (10) |
| C8A | 0.0137 (11) | 0.0286 (17) | 0.0235 (13) | 0.0018 (10) | −0.0016 (9) | 0.0001 (11) |
| C9 | 0.0201 (12) | 0.0321 (19) | 0.0267 (14) | 0.0026 (11) | 0.0000 (10) | 0.0002 (12) |
| C10 | 0.0194 (12) | 0.0363 (19) | 0.0295 (14) | 0.0012 (12) | −0.0088 (10) | −0.0024 (12) |
| C11 | 0.0147 (12) | 0.0284 (18) | 0.0377 (15) | −0.0034 (11) | −0.0073 (10) | 0.0043 (13) |
| C12 | 0.0150 (11) | 0.0277 (17) | 0.0299 (14) | 0.0019 (10) | −0.0015 (9) | 0.0073 (12) |
| C12A | 0.0122 (11) | 0.0267 (17) | 0.0237 (13) | 0.0035 (10) | −0.0019 (9) | 0.0048 (11) |
| C12B | 0.0143 (11) | 0.0261 (16) | 0.0193 (12) | 0.0040 (10) | 0.0009 (9) | 0.0045 (11) |
| C13 | 0.0116 (11) | 0.0356 (19) | 0.0182 (12) | 0.0015 (11) | 0.0000 (8) | −0.0008 (11) |
| C14 | 0.0144 (11) | 0.0300 (18) | 0.0441 (16) | −0.0057 (11) | 0.0076 (10) | 0.0043 (13) |
| C15 | 0.0141 (11) | 0.0280 (17) | 0.0204 (12) | −0.0026 (10) | −0.0001 (9) | −0.0015 (11) |
| C16 | 0.0231 (13) | 0.0402 (19) | 0.0229 (13) | −0.0009 (12) | −0.0027 (10) | 0.0095 (12) |
| C17 | 0.0159 (11) | 0.0321 (17) | 0.0248 (13) | −0.0033 (11) | −0.0013 (9) | 0.0019 (11) |
| C18 | 0.0208 (12) | 0.0424 (19) | 0.0305 (14) | −0.0068 (12) | −0.0002 (10) | −0.0059 (13) |
| F1—C11 | 1.383 (3) | C7A—N8 | 1.382 (3) |
| O1—C13 | 1.228 (3) | C7A—C12B | 1.390 (3) |
| O2—C13 | 1.352 (3) | N8—C8A | 1.383 (3) |
| O2—C14 | 1.461 (3) | N8—H8 | 0.93 (3) |
| O3—C15 | 1.213 (3) | C8A—C9 | 1.401 (3) |
| O4—C15 | 1.347 (3) | C8A—C12A | 1.425 (3) |
| O4—C16 | 1.451 (3) | C9—C10 | 1.388 (3) |
| C1—C12B | 1.502 (3) | C9—H9 | 0.9500 |
| C1—C2 | 1.532 (3) | C10—C11 | 1.400 (4) |
| C1—H1A | 0.9900 | C10—H10 | 0.9500 |
| C1—H1B | 0.9900 | C11—C12 | 1.376 (3) |
| C2—C3 | 1.366 (3) | C12—C12A | 1.417 (3) |
| C2—C13 | 1.487 (4) | C12—H12 | 0.9500 |
| C3—N4 | 1.407 (3) | C12A—C12B | 1.442 (3) |
| C3—C15 | 1.530 (3) | C14—H14A | 0.9800 |
| N4—C17 | 1.475 (3) | C14—H14B | 0.9800 |
| N4—C5 | 1.488 (3) | C14—H14C | 0.9800 |
| C5—C6 | 1.531 (4) | C16—H16A | 0.9800 |
| C5—H5A | 0.9900 | C16—H16B | 0.9800 |
| C5—H5B | 0.9900 | C16—H16C | 0.9800 |
| C6—C7 | 1.542 (3) | C17—C18 | 1.520 (4) |
| C6—H6A | 0.9900 | C17—H17A | 0.9900 |
| C6—H6B | 0.9900 | C17—H17B | 0.9900 |
| C7—C7A | 1.499 (3) | C18—H18A | 0.9800 |
| C7—H7A | 0.9900 | C18—H18B | 0.9800 |
| C7—H7B | 0.9900 | C18—H18C | 0.9800 |
| C13—O2—C14 | 114.88 (19) | C8A—C9—H9 | 121.0 |
| C15—O4—C16 | 115.13 (19) | C9—C10—C11 | 119.3 (2) |
| C12B—C1—C2 | 118.4 (2) | C9—C10—H10 | 120.4 |
| C12B—C1—H1A | 107.7 | C11—C10—H10 | 120.4 |
| C2—C1—H1A | 107.7 | C12—C11—F1 | 118.4 (2) |
| C12B—C1—H1B | 107.7 | C12—C11—C10 | 124.6 (2) |
| C2—C1—H1B | 107.7 | F1—C11—C10 | 117.0 (2) |
| H1A—C1—H1B | 107.1 | C11—C12—C12A | 117.0 (2) |
| C3—C2—C13 | 117.2 (2) | C11—C12—H12 | 121.5 |
| C3—C2—C1 | 122.2 (2) | C12A—C12—H12 | 121.5 |
| C13—C2—C1 | 120.61 (19) | C12—C12A—C8A | 118.8 (2) |
| C2—C3—N4 | 122.4 (2) | C12—C12A—C12B | 133.8 (2) |
| C2—C3—C15 | 120.9 (2) | C8A—C12A—C12B | 107.3 (2) |
| N4—C3—C15 | 116.65 (18) | C7A—C12B—C12A | 106.40 (19) |
| C3—N4—C17 | 117.83 (18) | C7A—C12B—C1 | 125.5 (2) |
| C3—N4—C5 | 115.06 (19) | C12A—C12B—C1 | 128.1 (2) |
| C17—N4—C5 | 113.43 (16) | O1—C13—O2 | 122.0 (2) |
| N4—C5—C6 | 113.7 (2) | O1—C13—C2 | 124.4 (2) |
| N4—C5—H5A | 108.8 | O2—C13—C2 | 113.6 (2) |
| C6—C5—H5A | 108.8 | O2—C14—H14A | 109.5 |
| N4—C5—H5B | 108.8 | O2—C14—H14B | 109.5 |
| C6—C5—H5B | 108.8 | H14A—C14—H14B | 109.5 |
| H5A—C5—H5B | 107.7 | O2—C14—H14C | 109.5 |
| C5—C6—C7 | 113.24 (19) | H14A—C14—H14C | 109.5 |
| C5—C6—H6A | 108.9 | H14B—C14—H14C | 109.5 |
| C7—C6—H6A | 108.9 | O3—C15—O4 | 124.7 (2) |
| C5—C6—H6B | 108.9 | O3—C15—C3 | 123.6 (2) |
| C7—C6—H6B | 108.9 | O4—C15—C3 | 111.68 (19) |
| H6A—C6—H6B | 107.7 | O4—C16—H16A | 109.5 |
| C7A—C7—C6 | 111.7 (2) | O4—C16—H16B | 109.5 |
| C7A—C7—H7A | 109.3 | H16A—C16—H16B | 109.5 |
| C6—C7—H7A | 109.3 | O4—C16—H16C | 109.5 |
| C7A—C7—H7B | 109.3 | H16A—C16—H16C | 109.5 |
| C6—C7—H7B | 109.3 | H16B—C16—H16C | 109.5 |
| H7A—C7—H7B | 107.9 | N4—C17—C18 | 112.19 (18) |
| N8—C7A—C12B | 109.5 (2) | N4—C17—H17A | 109.2 |
| N8—C7A—C7 | 120.7 (2) | C18—C17—H17A | 109.2 |
| C12B—C7A—C7 | 129.5 (2) | N4—C17—H17B | 109.2 |
| C7A—N8—C8A | 109.62 (19) | C18—C17—H17B | 109.2 |
| C7A—N8—H8 | 126.5 (15) | H17A—C17—H17B | 107.9 |
| C8A—N8—H8 | 123.3 (15) | C17—C18—H18A | 109.5 |
| N8—C8A—C9 | 130.4 (2) | C17—C18—H18B | 109.5 |
| N8—C8A—C12A | 107.2 (2) | H18A—C18—H18B | 109.5 |
| C9—C8A—C12A | 122.4 (2) | C17—C18—H18C | 109.5 |
| C10—C9—C8A | 117.9 (2) | H18A—C18—H18C | 109.5 |
| C10—C9—H9 | 121.0 | H18B—C18—H18C | 109.5 |
| C12B—C1—C2—C3 | 88.1 (3) | N8—C8A—C12A—C12 | −179.6 (2) |
| C12B—C1—C2—C13 | −93.4 (3) | C9—C8A—C12A—C12 | 0.4 (4) |
| C13—C2—C3—N4 | 163.5 (2) | N8—C8A—C12A—C12B | 0.1 (3) |
| C1—C2—C3—N4 | −18.0 (3) | C9—C8A—C12A—C12B | −179.9 (2) |
| C13—C2—C3—C15 | −14.3 (3) | N8—C7A—C12B—C12A | −0.9 (3) |
| C1—C2—C3—C15 | 164.2 (2) | C7—C7A—C12B—C12A | −174.2 (2) |
| C2—C3—N4—C17 | 150.5 (2) | N8—C7A—C12B—C1 | 179.6 (2) |
| C15—C3—N4—C17 | −31.6 (3) | C7—C7A—C12B—C1 | 6.3 (4) |
| C2—C3—N4—C5 | −71.5 (3) | C12—C12A—C12B—C7A | −179.9 (2) |
| C15—C3—N4—C5 | 106.4 (2) | C8A—C12A—C12B—C7A | 0.5 (3) |
| C3—N4—C5—C6 | 141.0 (2) | C12—C12A—C12B—C1 | −0.4 (4) |
| C17—N4—C5—C6 | −79.1 (2) | C8A—C12A—C12B—C1 | −180.0 (2) |
| N4—C5—C6—C7 | −58.9 (2) | C2—C1—C12B—C7A | −98.2 (3) |
| C5—C6—C7—C7A | −54.3 (3) | C2—C1—C12B—C12A | 82.3 (3) |
| C6—C7—C7A—N8 | −83.2 (3) | C14—O2—C13—O1 | −2.1 (3) |
| C6—C7—C7A—C12B | 89.4 (3) | C14—O2—C13—C2 | 176.11 (18) |
| C12B—C7A—N8—C8A | 1.0 (3) | C3—C2—C13—O1 | −21.2 (3) |
| C7—C7A—N8—C8A | 174.9 (2) | C1—C2—C13—O1 | 160.2 (2) |
| C7A—N8—C8A—C9 | 179.3 (3) | C3—C2—C13—O2 | 160.6 (2) |
| C7A—N8—C8A—C12A | −0.6 (3) | C1—C2—C13—O2 | −18.0 (3) |
| N8—C8A—C9—C10 | 179.1 (2) | C16—O4—C15—O3 | −8.8 (3) |
| C12A—C8A—C9—C10 | −1.0 (4) | C16—O4—C15—C3 | 174.42 (19) |
| C8A—C9—C10—C11 | 0.7 (4) | C2—C3—C15—O3 | 122.1 (3) |
| C9—C10—C11—C12 | 0.2 (4) | N4—C3—C15—O3 | −55.9 (3) |
| C9—C10—C11—F1 | −178.6 (2) | C2—C3—C15—O4 | −61.1 (3) |
| F1—C11—C12—C12A | 178.0 (2) | N4—C3—C15—O4 | 121.0 (2) |
| C10—C11—C12—C12A | −0.7 (4) | C3—N4—C17—C18 | −64.2 (3) |
| C11—C12—C12A—C8A | 0.4 (3) | C5—N4—C17—C18 | 157.2 (2) |
| C11—C12—C12A—C12B | −179.2 (3) |
| H··· | ||||
| N8—H8···O1i | 0.93 (3) | 2.17 (3) | 3.025 (3) | 153 (2) |