Literature DB >> 29761458

The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data.

Victoria Newman1, Benjamin Moore1, Helen Sparrow1, Emily Perry2.   

Abstract

The Ensembl Genome Browser provides a wealth of freely available genomic data that can be accessed for many purposes by genetics, genomics, and molecular biology researchers. Herein we present two protocols for exploring different aspects of these data: a phenotype and its associated variants and genes, and a promoter and the epigenetic marks and protein-binding activity associated with it. These workflows illustrate a subset of the data types available through the Ensembl Browser, and can be considered a springboard for further exploration.

Keywords:  Ensembl; Epigenetic mark; Eukaryotic genomes; Phenotypes; Variants

Mesh:

Year:  2018        PMID: 29761458     DOI: 10.1007/978-1-4939-7737-6_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data.

Authors:  Barbara Kramarz; Paola Roncaglia; Birgit H M Meldal; Rachael P Huntley; Maria J Martin; Sandra Orchard; Helen Parkinson; David Brough; Rina Bandopadhyay; Nigel M Hooper; Ruth C Lovering
Journal:  Genes (Basel)       Date:  2018-11-29       Impact factor: 4.096

2.  Chloroquine and Hydroxychloroquine Interact Differently with ACE2 Domains Reported to Bind with the Coronavirus Spike Protein: Mediation by ACE2 Polymorphism.

Authors:  Riadh Badraoui; Mohd Adnan; Fevzi Bardakci; Mousa M Alreshidi
Journal:  Molecules       Date:  2021-01-28       Impact factor: 4.411

3.  UniBind: maps of high-confidence direct TF-DNA interactions across nine species.

Authors:  Rafael Riudavets Puig; Paul Boddie; Aziz Khan; Jaime Abraham Castro-Mondragon; Anthony Mathelier
Journal:  BMC Genomics       Date:  2021-06-26       Impact factor: 3.969

4.  Mouse Genome Informatics (MGI): latest news from MGD and GXD.

Authors:  Martin Ringwald; Joel E Richardson; Richard M Baldarelli; Judith A Blake; James A Kadin; Cynthia Smith; Carol J Bult
Journal:  Mamm Genome       Date:  2021-10-26       Impact factor: 2.957

  4 in total

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