Kecheng Jie1, Ming Liu2, Yujuan Zhou1, Marc A Little2, Angeles Pulido3, Samantha Y Chong2, Andrew Stephenson2, Ashlea R Hughes4, Fumiyasu Sakakibara5, Tomoki Ogoshi5,6,7, Frédéric Blanc4, Graeme M Day3, Feihe Huang1, Andrew I Cooper2. 1. State Key Laboratory of Chemical Engineering, Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry , Zhejiang University , Hangzhou 310027 , People's Republic of China. 2. Materials Innovation Factory and Department of Chemistry , University of Liverpool , 51 Oxford Street , Liverpool L7 3NY , United Kingdom. 3. Computational Systems Chemistry, School of Chemistry , University of Southampton , Southampton SO17 1BJ , United Kingdom. 4. Department of Chemistry and Stephenson Institute for Renewable Energy , University of Liverpool , Crown Street , Liverpool L69 7ZD , United Kingdom. 5. Graduate School of Natural Science and Technology , Kanazawa University , Kakuma-machi , Kanazawa , Ishikawa 920-1192 , Japan. 6. WPI Nano Life Science Institute , Kanazawa University , Kakuma-machi , Kanazawa , Ishikawa 920-1192 , Japan. 7. JST , PRESTO , 4-1-8 Honcho , Kawaguchi , Saitama 332-0012 , Japan.
Abstract
The energy-efficient separation of alkylaromatic compounds is a major industrial sustainability challenge. The use of selectively porous extended frameworks, such as zeolites or metal-organic frameworks, is one solution to this problem. Here, we studied a flexible molecular material, perethylated pillar[ n]arene crystals ( n = 5, 6), which can be used to separate C8 alkylaromatic compounds. Pillar[6]arene is shown to separate para-xylene from its structural isomers, meta-xylene and ortho-xylene, with 90% specificity in the solid state. Selectivity is an intrinsic property of the pillar[6]arene host, with the flexible pillar[6]arene cavities adapting during adsorption thus enabling preferential adsorption of para-xylene in the solid state. The flexibility of pillar[6]arene as a solid sorbent is rationalized using molecular conformer searches and crystal structure prediction (CSP) combined with comprehensive characterization by X-ray diffraction and 13C solid-state NMR spectroscopy. The CSP study, which takes into account the structural variability of pillar[6]arene, breaks new ground in its own right and showcases the feasibility of applying CSP methods to understand and ultimately to predict the behavior of soft, adaptive molecular crystals.
The energy-efficient separation of alkylaromatic compounds is a major industrial sustainability challenge. The use of selectively porous extended frameworks, such as zeolites or metal-organic frameworks, is one solution to this problem. Here, we studied a flexible molecular material, perethylated pillar[ n]arene crystals ( n = 5, 6), which can be used to separate C8 alkylaromatic compounds. Pillar[6]arene is shown to separate para-xylene from its structural isomers, meta-xylene and ortho-xylene, with 90% specificity in the solid state. Selectivity is an intrinsic property of the pillar[6]arene host, with the flexible pillar[6]arene cavities adapting during adsorption thus enabling preferential adsorption of para-xylene in the solid state. The flexibility of pillar[6]arene as a solid sorbent is rationalized using molecular conformer searches and crystal structure prediction (CSP) combined with comprehensive characterization by X-ray diffraction and 13C solid-state NMR spectroscopy. The CSP study, which takes into account the structural variability of pillar[6]arene, breaks new ground in its own right and showcases the feasibility of applying CSP methods to understand and ultimately to predict the behavior of soft, adaptive molecular crystals.
With
the expanding global demand for petrochemical feedstocks,
the development of new materials that reduce the environmental impact
of chemical processing is important. Improving the efficiency of the
separation and refining of aromatic hydrocarbons is of particular
importance, given the large volumes of these compounds that are used
as starting materials in the chemical industry.[1] One of the most challenging separations is that of xylene
isomers (ortho, meta and para, hereafter referred to as X, X and X), which was classified by Sholl
as one of the “seven chemical separations to change the world”.[2] These xylene isomers are obtained from crude
oil by catalytic reforming, by toluene disproportionation, and by
the distillation of pyrolysis gasoline.[3] They act as antiknocking additives in gasoline and they also are
important chemical feedstocks for phthalic anhydrides and phthalonitriles. X is the most important isomer:
it is primarily used as a feedstock with purity requirement of >99%,
for terephthalic acid and dimethyl terephthalate production; these
compounds are then used to prepare polyester fibers and polyethylene
terephthalate (PET) resins for beverage bottles.[4−8] The energy-efficient separation of X from X and X with
high purity is therefore important in large-scale plastics production.X, X and X have similar boiling points (Table S1, Supporting Information), but the difference in their freezing
points allows separation by fractional crystallization. X has the highest melting point because X molecules can stack more efficiently;
pure X crystals are hence
the first to crystallize from the solution. However, the energy requirement
for fractional crystallization is high because of the need to cool
large quantities of material to about −53 °C.[9] Selective adsorption of xylene isomers in the
pores of ordered crystalline microporous materials is an energy-efficient
alternative to fractional crystallization.[10−16] However, identifying a suitable porous material for xylene separation
is challenging due to similar molecular sizes of the three isomers.
Moreover, most potential candidate crystalline porous frameworks are
built using reversible chemistry and they are not stable enough for
industrial application: the loss of porosity is typically irreversible
and catastrophic for this separation.Pillar[n]arenes (n = 5–15)
have emerged as a novel class of supramolecular hosts since they were
first reported in 2008.[17−40] Their host–guest properties have been investigated using
a diverse range of guest molecules, including hydrocarbons.[32−34,40] For example, we reported the
host–guest chemistry between alkyl chains and pillar[5]arenes
due to CH/π interactions.[32,33] Yang et al. reported
a biphenyl-extended pillar[n]arene for an efficient
selective inclusion of toluene and X.[34] With these unique features,
we and other groups found that pillararene crystals can be used for
gas storage and hydrocarbon separations.[37−40] For example, we recently reported
that a perethylated pillar[6]arene can act as a separation material
to purifystyrene from a mixture of styrene and ethylbenzene.[39] That separation was based on a solid-state recrystallization
process, rather than an adsorptive separation that uses a material
with permanent, pre-existing pores. Styrene molecules were selectively
adsorbed in extrinsic voids in the crystal structure: that is, the
host–guest properties of the pillar[n]arene
cavity were not directly exploited.We show here that the intrinsic
cavity of pillar[n]arenes can be utilized in molecular
separations of important C8
hydrocarbon feedstocks. The shape selectivity of two perethylated
pillar[n]arenes with different cavity sizes were
investigated (where n = 5 or 6, referred to hereafter
as EtP5 and EtP6). We found that EtP6 adsorbs X selectively
from a mixture of xylene isomers, both in solution and in the solid
state. Selective adsorption of X is an intrinsic feature of the EtP6 host with
the flexible EtP6 cavities adapting during adsorption,
thus enabling preferential adsorption of X in the crystalline state, unlike our previous styrene
study.[39] The flexibility of EtP6 can be rationalized computationally by exploring the conformational
energy landscape, and this explains the flexibility that we observe
by crystallography and solid-state NMR. The observed combination of
adsorptive separation and guest-induced restructuring is similar to
flexible MOFs[10,41] but reported here for an adaptive
molecular crystal. We exploited this selectivity to develop an adsorption/desorption
process where X could
be separated from a 1:1:1 mixture of the three xylene isomers with
a purity of 99.1%.
Results and Discussion
Structural
Analysis of EtP5 with Xylene Isomers
in Solution and the Solid State
First, the host–guest
chemistry of EtP5 with X, X or X was investigated. These three
xylene isomers have different dimensions, and the size of these approach
the size of the EtP5 cavity (Figure
S1). In the 1:1 host–guest crystal structure of X@EtP5, the X guest is only partially accommodated
in the EtP5 cavity with the aromatic pillars of EtP5 adopting a bowl shape to accommodate the X guest (Figure b). In the crystal structure of X@EtP5, we found ordered X guest molecules with one of
the methyl groups pointing toward the center of the EtP5 cavity, whereas the second, meta substituted, methyl
group does not fit in the EtP5 cavity (Figure d). When EtP5 was
crystallized from X, no X was found in the structure.
Instead, the structure is guest free and referred hereafter as, EtP5α (Figure c). During this study, we activated EtP5 material
by desolvating a THF solvate. The experimental powder X-ray diffraction
(PXRD) pattern of activated EtP5 material matches the
simulated PXRD pattern of EtP5α (Figure f). Hence, EtP5α is the structure of the activated material.
Figure 1
Scheme summarizing the
interconversion of the various pillar[5]arene–xylene
host–guest crystal structures in solution and the solid state.
(a) Chemical structure of perethylated pillar[5]arene (EtP5). Single crystal structure: (b) X@EtP5, (c) guest free EtP5α,
obtained after crystallization of EtP5 from an X solution, (d) X@EtP5 and (e) 2(EtP5)·4(THF). (f) On activation, the EtP5 solvate structures (THF, X or X)
transfrom to the guest free, thermally stable phase, EtP5α, as confirmed by powder X-ray diffraction pattern. Bottom:
PXRD patterns of EtP5α simulated from desolvated
single crystal structure of EtP5α, obtained by
slow evaporation of X from
an X-EtP5 solution; Top: recrystallized from THF and desolvated at 60 °C
under dynamic vacuum.
Scheme summarizing the
interconversion of the various pillar[5]arene–xylene
host–guest crystal structures in solution and the solid state.
(a) Chemical structure of perethylated pillar[5]arene (EtP5). Single crystal structure: (b) X@EtP5, (c) guest free EtP5α,
obtained after crystallization of EtP5 from an X solution, (d) X@EtP5 and (e) 2(EtP5)·4(THF). (f) On activation, the EtP5 solvate structures (THF, X or X)
transfrom to the guest free, thermally stable phase, EtP5α, as confirmed by powder X-ray diffraction pattern. Bottom:
PXRD patterns of EtP5α simulated from desolvated
single crystal structure of EtP5α, obtained by
slow evaporation of X from
an X-EtP5 solution; Top: recrystallized from THF and desolvated at 60 °C
under dynamic vacuum.
Structural Analysis of EtP6 with Xylene Isomers
in Solution and the Solid State
After determining the solid-state
host–guest chemistry of EtP5 and the xylene isomers,
we next investigated EtP6. The cavity size of EtP6 is larger; hence, it is more likely that the three xylene isomers
can fit within the EtP6 cavity. Single crystal structures
of EtP6 with X, X and X were all obtained. In the 1:1 host–guest
crystal structure of X@EtP6, one X molecule is located almost perfectly in the center of the EtP6 cavity (Figure b). This host–guest complex is stabilized by offset
π–π stacking interactions between X and two aromatic rings of EtP6 (Figure b). The
hexagonal pillar structure of EtP6 contributes to the
formation of infinite 1D channels running through the aligned macrocycles
that are filled with ordered X guests (Figure b). The 2:1 solvated crystal structure of EtP6 with X, 2(X)@EtP6, is markedly different.
Two opposite aromatic pillars of EtP6 are turned perpendicular
with respect to their neighboring pillars (Figure d). Hence, in 2(X)@EtP6, EtP6 has a deformed
cavity that is too small to fully accommodate a X guest (Figure d). When crystallized from X, EtP6 formed a 1:1 host–guest
complex, X@EtP6 (Figure c), where
the oX molecules are disordered within the EtP6 cavity with the ortho-substituted methyl groups
located in the center of the cavity. The hexagonal structure of EtP6 forms infinite intrinsic 1D channels that are filled
with X guests, broadly
comparable with X@EtP6, but again, the EtP6 adopts a different
conformation. In X@EtP6, the EtP6 pillars are angled to maximize
π–π stacking interactions with the X guest. By contrast, in X@EtP6 the pillars are
all aligned and the X guest
is disordered.
Figure 2
Scheme summarizing the interconversion of the various
pillar[6]arene–xylene
host–guest crystal structures in solution and the solid state.
(a) Chemical structure of perethylated pillar[6]arene (EtP6). Single crystal structures: (b) X@EtP6, (c) 2(X)@EtP6 and (d) X@EtP6. (e) The
metastable, EtP6α, which has a 1D pore structure,
is obtained by carefully activating the acetone solvate.[32] (f) By thermally desolvating EtP6 structures at 160 °C (acetone, X, X or X), a stable phase, referred
to as EtP6β, is obtained. (g) When EtP6β is exposed to X vapor, a new structure, X@EtP6, is found.
Scheme summarizing the interconversion of the various
pillar[6]arene–xylene
host–guest crystal structures in solution and the solid state.
(a) Chemical structure of perethylated pillar[6]arene (EtP6). Single crystal structures: (b) X@EtP6, (c) 2(X)@EtP6 and (d) X@EtP6. (e) The
metastable, EtP6α, which has a 1D pore structure,
is obtained by carefully activating the acetone solvate.[32] (f) By thermally desolvating EtP6 structures at 160 °C (acetone, X, X or X), a stable phase, referred
to as EtP6β, is obtained. (g) When EtP6β is exposed to X vapor, a new structure, X@EtP6, is found.Because of the apparently favorable host–guest interactions
(Figure b), we speculated
that EtP6 might crystallize preferentially with X in the presence of X and X. Indeed, when EtP6 was crystallized from
a 1:1:1 (v:v:v) mixture of the three xylene isomers, we only obtained
single crystals of X@EtP6, showing that EtP6 selectively captures X in its cavity from solution.These single crystal structure studies suggested that EtP6, with its hexagonal shape and larger cavity than EtP5, might be more efficient for the dynamic separation of X from X and X.
To test this, samples of EtP5 and EtP6 were
activated and crystallized from tetrahydrofuran and acetone, respectively.
We also followed the activation of EtP6 by both single
crystal X-ray diffraction (SC-XRD) and PXRD. For EtP6, careful removal of acetone from the EtP6 solvate at
room temperature afforded EtP6α, which has been
characterized before by PXRD.[39] Here, we
found that thermal activation of the EtP6 solvate at
temperatures of ≥140 °C resulted in the formation of a
new phase, EtP6β (Figure f, S7–S10). The single crystal structure of EtP6β contains
a new EtP6 conformer where the aromatic pillars are no
longer aligned, and this rearrangement results in a loss of the EtP6 cavity (Figure S10).A similar phase transition process was also observed during the
desolvation of X@EtP6. As shown in Figure a, peaks related to a new phase started to appear upon
heating to around 140 °C in the in situ desolvation
PXRD experiment, and the phase transformation was completed at 160
°C. After cooling this sample to 20 °C, the structure of
the bulk materials was determined to be EtP6β,
which was found to be stable at ambient temperature. This process
was studied by thermogravimetric analysis (TGA) and differential scanning
calorimetry (DSC), as shown in Figure b. In the DSC curve of X@EtP6, a broad peak between 146 and 157
°C represents the loss of one X molecule from the host–guest complex, in line
with the weight loss observed by TGA, followed by a phase transformation.
Comparison of the TGA and DSC traces (Figure b) suggests that this phase transition occurs
when essentially all of the X guests have been removed.
Figure 3
(a) In situ variable temperature
PXRD patterns
for X@EtP6 showing thermal transformation at 160 °C. (b) Thermogravimetric
analysis (TGA) (blue) and differential scanning calorimetry (DSC)
(green) studies of X@EtP6. The difference in X desolvation temperature between TGA and DSC experiments
is a result of the different heating conditions (open pan under N2 flow for TGA, and sealed pan for DSC).
(a) In situ variable temperature
PXRD patterns
for X@EtP6 showing thermal transformation at 160 °C. (b) Thermogravimetric
analysis (TGA) (blue) and differential scanning calorimetry (DSC)
(green) studies of X@EtP6. The difference in X desolvation temperature between TGA and DSC experiments
is a result of the different heating conditions (open pan under N2 flow for TGA, and sealed pan for DSC).The 13C cross-polarization (CP) magic angle spinning
(MAS) NMR spectra of the three guest free pillararenes (EtP5α, EtP6α and EtP6β) are
shown in Figure and
provide structural information regarding the asymmetric unit. EtP6β shows a range of narrow and well resolved resonances
that could be assembled into the six different chemical subgroups
for EtP6, corresponding to the chemically distinct carbons
environments; for example, the quaternary carbon atoms bonded to oxygens
in OIV appear in the 149–155
ppm region. The assignment given is based on 13C-editing
NMR experiments and known 13C chemical shift values from
the literature.[42] With remarkably sharp
lines acquired at natural abundance, the carbon connectivities obtained
from the two-dimensional 13C–13C through-bond
INADEQUATE[43−45] correlation spectrum (Figure
S11a) further confirmed the assignment.
Figure 4
13C CP MAS
NMR spectra of (a) EtP5α,
(b) EtP6α and (c) EtP6β. Asterisks
(*) denote spinning sidebands. The expansion shows the experimental
spectrum (full line), total fit (dotted line) and spectral deconvolution
(dashed lines) of the OIV carbons; all other fits are given in the SI (Figure S12–S14).
13C CP MAS
NMR spectra of (a) EtP5α,
(b) EtP6α and (c) EtP6β. Asterisks
(*) denote spinning sidebands. The expansion shows the experimental
spectrum (full line), total fit (dotted line) and spectral deconvolution
(dashed lines) of the OIV carbons; all other fits are given in the SI (Figure S12–S14).The inset in Figure c (and the full spectral deconvolution in Figure
S14) shows that each environment consists of multiple 13C peaks whose integrations (see Experimental
Section) match well with the expected number of nonequivalent
carbon atoms in the asymmetric units, as determined by X-ray diffraction
(Figure f). For example,
seven OIV resonances are
resolved integrating 1:1:1:1:3:3:2 (from high to low frequency) and
matching the expected 12 OIV carbons in EtP6β. Calculations of the 13C chemical shifts of EtP6β was also carried out,
and the calculated chemical shifts were compared with the experimental
chemical shifts (as shown in Figure S11b). The comparison shows to be in excellent agreement, further validating
the spectral assignments. It also provides proof of the good match
between the experimentally obtained crystal structures and the calculated
conformers (see Crystal Structure Prediction section below).Similarly, the highly resolved 13C CP MAS NMR spectrum
of EtP5α allows each carbon environment to be observed
and quantified; there is a good agreement between the deconvoluted
spectra and the expected number of nonequivalent carbon atoms in EtP5α (e.g., ten OIV carbons, Figure a and S12). However, by comparison,
the resolution of the EtP6α spectrum is much poorer
with broader peaks observed (Figure b, S13). This indicates
that unlike EtP6β and EtP5α, EtP6α is not phase pure, which we attribute to the existence
of multiple EtP6 conformers in the metastable EtP6α activated material and highlights the importance of correlating
X-ray diffraction studies with solid-state NMR measurements.
Xylene
Vapor-Phase Adsorption Studies
Time-dependent
solid–vapor sorption experiments for single-component xylene
isomers were carried out for crystalline EtP5α
and EtP6β. It was found that EtP5α
adsorbed almost the same amount of X as EtP6β, but a lower amount of X and X (Figure S16a). Though EtP6β adsorbed similar amounts of each of the three
isomers at equilibrium, the uptake of X was much faster than for X and X,
at least in noncompetitive, single-component experiments (Figure a). We also carried
out PXRD studies to monitor the adsorption of the single xylene isomers
by EtP5α (Figure S16b) and EtP6β (Figure b). PXRD data indicated that EtP5α transformed into X@EtP5 after adsorption of X (Figure f → 1b, and S17). EtP5α showed no structural transformation after
exposure to X or X, suggesting that neither molecule
was adsorbed in the bulk by EtP5α. It is possible
that crystal surface adsorption accounts for the relatively small
uptake of these two isomers (8–10 times lower than X; Figure
S16a). PXRD data indicate that EtP6β, unlike EtP5α, transforms in the solid state after adsorption
of X, X and X (Figure and 5b). After adsorption of X and X, the PXRD patterns match the simulated PXRD patterns
derived from the single crystal structures of X@EtP6 (Figure f → 2b, S18), and X@EtP6 (Figure f → 2c, S19), respectively. The PXRD pattern of EtP6β
after adsorption of X (Figure b, PXRD pattern IV)
showed that the structure was neither EtP6β nor
2(X)@EtP6 (Figure b, PXRD
patterns I and V, respectively); rather, EtP6β
tranformed to a new phase, that was determined by single crystal X-ray
diffraction to be X@EtP6 (Figure f → 2g, S20).
Figure 5
(a) Time-dependent EtP6β solid–vapor
sorption plot for single-component xylene isomer vapor. (b) PXRD patterns:
(I) EtP6β; (II) EtP6β after
uptake of X vapor; (III)
simulated from single crystal structure of X@EtP6; (IV) EtP6β after
uptake of X vapor; (V)
simulated from single crystal structure of 2(X)@EtP6; (VI) EtP6β after uptake of X vapor; (VII) simulated from single crystal structure of X@EtP6.
(a) Time-dependent EtP6β solid–vapor
sorption plot for single-component xylene isomer vapor. (b) PXRD patterns:
(I) EtP6β; (II) EtP6β after
uptake of X vapor; (III)
simulated from single crystal structure of X@EtP6; (IV) EtP6β after
uptake of X vapor; (V)
simulated from single crystal structure of 2(X)@EtP6; (VI) EtP6β after uptake of X vapor; (VII) simulated from single crystal structure of X@EtP6.EtP6 can adsorb all three xylene isomers
because of
its conformational flexibility, which provides a flexible cavity and
adaptability in the crystal packing. To determine if EtP5α or EtP6β can discriminate between a mixture
of xylene isomers, we carried out time-dependent solid–vapor
sorption experiments using a 1:1:1 volumetric ratio of X: X: X. We found
that the uptake of xylene isomers by EtP5α was
almost negligible under these conditions (Figure
S23). The PXRD pattern of activated EtP5α
did not transform after exposure to the xylene isomer mixture for
10 h (Figure S25). It can be concluded
that the mixture of xylene isomers was not adsorbed in the bulk by EtP5α. Instead, we ascribe the small, substoichiometric
uptake of xylene isomers by EtP5α to be surface
adsorption on the crystals. It is noteworthy that EtP5α adsorbed neat X, whereas X was not adsorbed
from the xylene isomers mixture. The uptake of xylene by EtP6β was far greater. In fact, EtP6β adsorbed
ten times more X than X and X, before reaching its saturation point, and the X and X uptake remained extremely low during the whole experiment
(Figure a). The PXRD
pattern of EtP6β after exposure to this mixture
of isomers matched the simulated PXRD pattern for X@EtP6 (Figure b). These results show that EtP6β can selectively capture X from a mixture of isomers as a crystalline solid via the
transformation of EtP6β into X@EtP6 (Figure f → 2b). We
also used gas chromatography, which showed that the uptake of X by EtP6β
was ∼90% after 12 h, whereas uptake of X and X accounts for the other 10% (Figure a and S28). We
ascribe the low uptake of X and X to crystal surface
adsorption. These solid-state adsorption experiments confirmed that EtP6 can selectively capture X in the solid state as well as from solution. The X selectively of EtP6 is comparable to the best-performing MOFs/zolites used for this
application (Table S8).
Figure 6
(a) Time-dependent EtP6β solid–vapor
sorption plot for 1:1:1 xylene isomers mixture vapor. (b) PXRD patterns
of EtP6β after being exposed to xylene isomers
(1:1:1, v:v:v). (c) Relative xylene isomer uptake in EtP6 and EtP5 after 12 h upon surface removal using gas
chromatography. (d) Percentage of X, X and X in EtP6 for 12
h after the same material is recycled 5 times.
(a) Time-dependent EtP6β solid–vapor
sorption plot for 1:1:1 xylene isomers mixture vapor. (b) PXRD patterns
of EtP6β after being exposed to xylene isomers
(1:1:1, v:v:v). (c) Relative xylene isomer uptake in EtP6 and EtP5 after 12 h upon surface removal using gas
chromatography. (d) Percentage of X, X and X in EtP6 for 12
h after the same material is recycled 5 times.We found that the purity of the X could be further increased by adopting a surface removal
procedure after adsorption of a mixed xylene vapor in EtP6β. After adsorption of the vapor mixture, the EtP6 solids were heated at 40 °C for 30 min to remove any unbound
xylene isomer molecules physisorbed on the crystal surface (Figure S29). X was then released from the selectively formed X@EtP6 phase with a purity
of 99.1% (Figure c
and S30). Interestingly, after the X was completely removed from
the X@EtP6 crystals, the desolvated X@EtP6 was shown by PXRD experiments to remain as EtP6β (Figure a and S31).A major problem
in porous adsorbent technology is decreased performance
over time, either because of fouling or instability of the porous
framework. To be practically useful, X should be separated with an extremely high purity
and the adsorbent must perform well over many cycles without any degradation.
We proved that the EtP6β crystals could still capture X selectively from a xylene mixture
to form X@EtP6 in a second cycle (Figure d and S32); this process could
be cycled at least 5 times without any loss of performance in the
selective X capture (Figure d). We believe that
the adaptibility of these crystals allows them to “self-heal”
over multiple use cycles, and pore collapse is not an issue because
the materials are not permanently porous. Commercial grade xylene,
produced by the methylation of toluene and benzene, usually contains
about 40–65% of X and up to 20% each of X, X and ethylbenzene
(EB).[46] When commercial grade
xylene (X:X:X:EB = 20:20:20:40, v:v) was tested, EtP6β adsorbed 80.7% X after one cycle. This selectivity was found lower than that in the
1:1:1 xylene mixture discussed above, which probably mostly arises
from EB competing more effectively with X than either X or X (Figure S35).
Conformation Search and
Crystal Structure Prediction
Our X-ray diffraction studies
suggested that conformational flexibility
in EtP6 might be the key to understanding its selective
adsorption behavior. To explore this further, we carried out a computational
search of the molecular conformational space, which showed a large
number of energetically accessible conformers (Figure a). The lowest energy molecular geometries
are characterized by arene and ethyl groups that are folded in to
give compact conformers and therefore have a low radius of gyration
(Figure a). This maximizes
stabilizing nonbonded intramolecular contacts. By contrast, all of
the observed crystal structures make use of more open conformers that
provide fully expanded molecular cavities, as in X@EtP6, or partially open cavities,
as in X@EtP6 and X@EtP6. The calculated gas phase conformers that are geometrically nearest
to the conformations in the known phases of EtP6 are
indicated in Figure a.
Figure 7
(a) Calculated conformational landscape for EtP6.
Each point corresponds to a distinct conformer. Points encircled in
red are those with lowest RMSD when compared to the conformations
seen in observed crystal structures of EtP6 and are labeled
by the crystal form to which they correspond. Diagrams of the two
lowest energy predicted, collapsed conformers (circled in blue) are
shown. (b) Crystal structure prediction landscapes calculated from
five of the observed conformers of EtP6: EtP6β (black points); EtP6α (purple points); X@EtP6 (orange points);
2(X)@EtP6 (green points); X@EtP6 (light blue points). Each point corresponds to a distinct
crystal structure (local lattice energy minimum) of pure EtP6 (no guests were included in the calculations) and those corresponding
to observed crystal structures are highlighted as red circles. The
calculated structure of the artificially desolvated X@EtP6 with molecular
geometry constrained at the in-crystal conformation (X@EtP6exptconf) is shown
as an orange diamond.
(a) Calculated conformational landscape for EtP6.
Each point corresponds to a distinct conformer. Points encircled in
red are those with lowest RMSD when compared to the conformations
seen in observed crystal structures of EtP6 and are labeled
by the crystal form to which they correspond. Diagrams of the two
lowest energy predicted, collapsed conformers (circled in blue) are
shown. (b) Crystal structure prediction landscapes calculated from
five of the observed conformers of EtP6: EtP6β (black points); EtP6α (purple points); X@EtP6 (orange points);
2(X)@EtP6 (green points); X@EtP6 (light blue points). Each point corresponds to a distinct
crystal structure (local lattice energy minimum) of pure EtP6 (no guests were included in the calculations) and those corresponding
to observed crystal structures are highlighted as red circles. The
calculated structure of the artificially desolvated X@EtP6 with molecular
geometry constrained at the in-crystal conformation (X@EtP6exptconf) is shown
as an orange diamond.To further investigate the energetic relationship between
crystal
forms, we used crystal structure prediction (CSP) and calculated the
possible crystal structures available to each of the conformers found
experimentally (Figure b, where each point corresponds to a local minimum in the lattice
energy surface). All of the observed structures are located on the
calculated energy landscapes, as indicated in Figure b. This shows that the EtP6 arrangement
in each structure corresponds to a local energy minimum, even without
including the xylene guest molecules in the calculations. The EtP6β phase obtained by activation of the xylene solvates
is relatively low in energy, but it is not the lowest energy guest-free
structure of EtP6 that is possible; several putative
crystal structures are calculated to have lattice energies that are
lower by up to 30 kJ mol–1, even within this limited
set of five molecular conformations. The EtP6α
structure, which has the same crystal packing of EtP6 as the X@EtP6 structure, is one of the lowest energy crystal structures available
for the conformation with a fully open molecular cavity and all-parallel
arene rings (purple points in Figure a). The total lattice energy of this structure is high,
but it is likely stabilized in X@EtP6 through host–guest interactions
and entropic stabilization of the disordered X guest. The conformer corresponding to the X@EtP6 crystal structure
leads to the densest and most stable crystal structures in our computational
study (blue points, Figure b). However, there is a significant distortion between this
gas phase conformer and the experimental conformation found in X@EtP6; two of the
arene rings tilt further into the cavity in the gas phase conformation.
Because of this difference in molecular geometries, a close geometric
match to X@EtP6 is not found in the CSP set. The high-energy CSP-generated structure
indicated in Figure b matches the structure obtained by substituting the experimental EtP6 molecular geometry in X@EtP6 by the gas phase conformer without X, followed by lattice energy
minimization. To more accurately assess the lattice energy of X@EtP6, we calculated
the lattice energy with the molecular conformation constrained to
the in-crystal geometry. The result of this calculation (orange diamond, Figure b) shows that the
crystal packing of EtP6 in X@EtP6 is almost equi-energetic to that
found in 2(X)@EtP6. The strong dependence of the energy on the molecular geometry demonstrates
that the flexibility of this conformer is important in determining
the structure and stability of X@EtP6. We cannot infer from this that there
is no preferential thermodynamic driving force for the formation of X@EtP6 over 2(X)@EtP6 because
these CSP calculations exclude the guests. However, our kinetic studies
for the three individual xylene isomers (Figure a) suggest that the preferential formation
of X@EtP6 in the competitive adsorption process might be at least partly kinetic
in origin.Even though both pillararenes undergo rearrangements
to closed,
cavity-free structures during activation, we have shown experimentally
and explained by computation that their conformers are adaptive. Hence,
the host molecules can change conformation reversibly in the solid
state to enable the selective adsorption of guest molecules. For example,
CSP calculations reveal the energetic relationship between the unsolvated EtP6 structures of the two X solvates (Figure ): the EtP6 arrangement in the solution-grown
2(X)@EtP6 is much lower in energy on the landscape of crystal structures.
Indeed, the EtP6 packing in X@EtP6 is calculated to be the highest
energy of the experimentally observed structures, indicating that
vapor sorption in crystalline EtP6β leads to a
relatively high-energy, kinetically stable structure. X@EtP6 has a molecular
conformation that is very similar to EtP6β, from
which it is produced. This may therefore be the best structure that
is accessible without a more significant structural rearrangement,
which is not possible in the solid state.
Conclusions
We
have investigated the shape selective properties of two easily
obtained pillar[n]arenes, EtP5 and EtP6, toward three xylene isomers. Adaptive EtP6β crystals were found to efficiently capture X from a xylene isomer mixture with
high selectivity. We have used conformer searches and crystal structure
prediction methods to understand the flexibility of this molecular
crystal. Selectivity is an intrinsic property of the EtP6 host, arising from the suitable size and shape of the EtP6 cavity plus the flexibility of the EtP6 conformer in
the solid state. This adaptive behavior is comparable to certain MOFs,
in which the pore structures can adapt in the presence of guest molecules.
Though the separation of xylene isomers has been achieved in porous
extended frameworks, such as zeolites[47,48] and MOFs,[10−15] this new molecular approach offers potential advantages. For example, EtP6 is soluble, easy to synthesize, and has better chemical
stability than many crystalline MOFs and COFs. Also, exposure to xylene
transforms the structure of the adaptive material to the desired guest-loaded
structure: hence, loss of crystallinity caused from repeat adsorption
cycles does not result in a loss in performance, and the separation
is almost perfectly repeatable. Although the overall uptake capacity
in EtP6β is lower than some porous extended frameworks,
and the uptake kinetics are relatively slow, X can be separated from X and X with high purity in just one cycle, which is desirable.
Also, it is possible that the adsorption kinetics may become faster
at the higher temperatures at which xylenes are typically produced.[8,46] Though EtP5α did not perform well for xylene
separation, this molecule may have the potential to separate other
hydrocarbons. Hydrocarbon separations using higher members of pillar[n]arenes (n = 7, 8, 9, 10) are also a target
for future studies.
Experimental Section
Materials
Both EtP5 and EtP6 were synthesized as
described previously.[28] Activated crystalline EtP5, EtP5α
were recrystallized from tetrahydrofuran first and dried under vacuum
at 60 °C overnight. Activated crystalline EtP6, EtP6β were obtained by heating up to 160 °C for
1 h. All xylene isomer mixtures are 1:1:1 (v/v/v).
Single Crystal
Growth
When grown by solvent evaporation,
5 mg portions of dry EtP5 or EtP6 were transferred
into small glass sample vials and dissolved in 2 mL of X, X or X. The resultant
homogeneous solutions were allowed to slowly evaporate at room temperature
over 7 to 10 days to afford colorless crystals. Single crystals of EtP6β, suitable for SC-XRD, were isolated after heating
a sample of X@EtP6 at 160 °C for 1 h. All other phase transormations were monitored
by PXRD.
Xylene Vapor Adsorption Measurements
For each single-component
or mixture of xylene isomers vapor-phase experiment, an open 5 mL
vial containing 20 mg of guest-free EtP5α or EtP6β adsorbent was placed in a sealed 20 mL vial containing
1 mL of a single component or mixture of xylene isomers. Uptake by EtP5α or EtP6β crystals were measured
each hour by completely dissolving the crystals, and measuring the 1HNMR spectra to determine the ratio of each xylene isomer,
with respect to EtP5 or EtP6. In addtion,
relative uptake in the EtP5α or EtP6β crystals were measured after 12 h using gas chromatography
using a headspace method.
13C Solid-State NMR
The 13C solid-state
NMR spectra were acquired at room temperature on a 9.4 T Bruker Avance
III HDNMR spectrometer using a 4 mm HXY triple-resonance MAS probe
(in double resonance mode) tuned to 1H and 13C at 400.1 and 100.6 MHz, respectively. The experiments were performed
under magic angle spinning (MAS) at 12.5 kHz with a recycle delay
of 3.5 s and using cross-polarization (CP) with a 13C radio
frequency (rf) field amplitude of 41 kHz ramped to obtain maximum
signal at a 1H rf field of approximately 65 kHz and with
an optimized contact pulse of 1.5 ms. 1H pulses and SPINAL-64
heteronuclear decoupling[49] during 13C F2 acquisition were performed at a rf field
amplitude of 96 kHz whereas the 13C pulses in the 2D z-filter
refocused INADEQUATE[43,44] spectrum were performed at a
rf field amplitude of 60 kHz. Additionally, the rotor synchronized
echo and z-filter delays of the INADEQUATE experiment were experimentally
optimized for best efficiency and found to be 3.2 and 0.8 ms, respectively.
The 1D CP MAS spectrum was obtained with 2048 scans (experimental
time 2 h) whereas the INADEQUATE spectrum[43] was acquired with 78 t1 increments and
the same number of scans (total experimental time 6.5 days). All data
were processed with 5 Hz exponential line broadening, unless stated
otherwise, and simulated with Topspin. The 13C chemical
shifts were externally referenced at room temperature to the CH2 group of adamantane at 29.45 ppm.[50] Note that although 13C CP MAS experiments are not quantitative,
only 13C integration within a chemically distinct carbon
environment is only given as its similar nature allows carbon ratios
to be appropriately estimated.
Conformer Search
Molecular conformers were generated
using a low-mode conformational search (LMCS) method,[51,52] as implemented in MacroModel.[53] In the
LMCS algorithm, a starting molecular geometry is initially optimized,
subsequently perturbed along a random combination of its calculated
normal modes and reoptimized. Newly generated molecular conformers
are clustered on the fly. Because of the large number of energy evaluations
and minimizations required for an exhaustive search, the initial conformer
search was performed using a force field based methodology; we applied
the OPLS3[54] force field, as implemented
in Schrödinger.[55] To ensure conformational
search was as complete as possible two sets with a total of 150 000
conformers were generated from two independent searches performed
using minimum and maximum move distances of 6 and 12 Å. Conformational
searches were started from the crystallographic molecular geometries
of 2(X)@EtP6. Similar conformational space was sampled when the search was started
from the unfolded EtP6 conformer of EtP6α. Energy minimization was performed using the PRCG algorithm[56] and was considered converged when gradients
were below 0.05 kJ/mol/Å. Duplicate molecular geometries were
removed if all-atom RMS deviation of atomic positions, as implemented
in MacroModel, was lower than 1.0 Å, which allows to reduce the
vast number of conformers generated without losing completeness of
the conformational space.In our experience, significant inaccuracies
in the description of the possible conformers can result from the
use of a force field based methodology.[57] Therefore, a more accurate description was obtained by DFT-D reoptimization
of all unique conformers within a 50 kJ/mol window of the OPLS3 global
minimum. DFT-D geometry optimization was performed with the Gaussian
09 code[58] using the B3LYP[59,60] functional and 6-311G(d,p) basis set, using a tight DFT integration
grid. Dispersion energy corrections were included using Grimme’s
D3 scheme with Becke and Johnson (BJ) damping.[61,62] The relative energy of a given conformer, at DFT-D level, was defined
as the difference between its total gas phase DFT-D energy and the
lowest total gas phase DFT-D energy of the molecular conformers. The
radius of gyration of each DFT-D optimized conformer was calculated
using BIOVIA’s Materials Studio software.
Crystal Structure
Prediction (CSP)
Trial crystal structures
were generated with one molecule in the asymmetric unit in the 30
most common space groups in which nonpolymeric organic molecular crystal
structures are reported in the Cambridge Structure Database: P21/c; P212121; P1̅; P21; Pbca; C2/c; Pna21; Cc; Pca21; C2; P1; Pbcn; Pc; P21212; P43212; P41; P32; Fdd2; Pccn; P2/c; P61; I41/a; R3̅; C2221; P42/n; P3221; Aba2; P-321c; Iba2 and R3. CSP was
performed using a quasi-random sampling procedure, as implemented
in the Global Lattice Energy Explorer software.[63] The generation of structures involves a low-discrepancy
sampling of all structural variables within each space group: unit
cell lengths and angles; molecular positions and orientations within
the asymmetric unit. Space group symmetry was then applied and a geometric
test was performed for overlap between molecules, which was removed
by lattice expansion (the SAT-expand method in ref (56)). All accepted trial structures
were lattice energy minimized and the search was run until a total
of 5000 lattice energy minimizations had been performed in each space
group. Crystal structure prediction landscapes were calculated from
five EtP6 conformers observed in EtP6α, EtP6β, X@EtP6, 2(X)@EtP6 and X@EtP6 crystal structures. Initial crystallographic molecular
geometries were optimized at the aforementioned DFT-D level. Molecular
geometries were held rigid during crystal structure generation and
lattice energy minimization. Trial structures were minimized following
a two-step lattice energy minimization protocol. Structures were initially
optimized applying an external pressure of 0.1 GPa, followed by a
final lattice energy minimization after removal of the external pressure.
Space group symmetry was constrained during both lattice energy minimization
steps. Lattice energy minimizations were performed using an anisotropic
atom–atom potential using DMACRYS.[64] Electrostatic interactions were modeled using CHLEPG point charges,
as implemented in Gaussian09,[58] during
the first lattice energy minimization and using an atomic multipole
description[65] (up to hexadecapole) of the
molecular charge distribution from the B3LYP/6-31G** calculated charge
density using a distributed multipole analysis in the second lattice
energy minimization. Atom–atom repulsion and dispersion interactions
were modeled using the W99 model potential.[66] Charge–charge, charge–dipole and dipole–dipole
interactions were calculated using Ewald summation, whereas all other
intermolecular interactions were summed to a 30 Å cutoff between
molecular centers-of-mass. For a given molecule, relative (lattice)
energy of a given predicted crystal structure was evaluated as the
difference between its calculated lattice energy and lattice energy
of the global minima on the energy vs density landscape of that given
molecule. Duplicate structures were removed from the set using COMPACK,[67] based on matching interatomic distances within
30 molecule clusters.The lattice energy of X@EtP6 with the molecular geometry
constrained at the experimental in-crystal conformation was evaluated
by first performing a constrained single molecule geometry optimization
with all torsion angles determining the orientation of the arene rings
fixed from the X-ray crystal structure. The resulting molecular geometry
was substituted into the experimental X@EtP6 crystal structure (after removal
of X) and a rigid molecule
lattice energy minimization was performed. The molecular geometry
optimization and lattice energy minimization used identical computational
methods (functional, basis set, force field and cutoffs) to those
used in the conformer search and CSP.
Authors: Robin K Harris; Sylvian Cadars; Lyndon Emsley; Jonathan R Yates; Chris J Pickard; Ram K R Jetti; Ulrich J Griesser Journal: Phys Chem Chem Phys Date: 2006-11-24 Impact factor: 3.676
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Authors: Peng Cui; David P McMahon; Peter R Spackman; Ben M Alston; Marc A Little; Graeme M Day; Andrew I Cooper Journal: Chem Sci Date: 2019-09-17 Impact factor: 9.825