Literature DB >> 29753875

CircRNA accumulation: A new hallmark of aging?

David Knupp1, Pedro Miura2.   

Abstract

Circular RNAs (circRNAs) are a newly appreciated class of RNAs found across phyla that are generated most commonly from back-splicing of protein-coding exons. Recent profiling of circRNAs genome-wide has shown that hundreds of circRNAs dramatically increase in expression during aging in the brains of multiple organisms. No other class of transcripts has been found to show such a strong correlation with aging as circRNAs-could they be playing a role in the aging process? Here, we discuss the different methods used to profile circRNAs and discuss current limitations of these approaches. We argue that age-related increases in global circRNA levels likely result from their high stability. The functions of circRNAs are only beginning to emerge, and it is an open question whether circRNA accumulation impacts the aging brain. We discuss experimental approaches that could illuminate whether age-accumulation of circRNAs are detrimental or protective to the aging brain.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Aging; Alternative splicing; Nervous system; RNA-Seq; circRNA

Mesh:

Substances:

Year:  2018        PMID: 29753875      PMCID: PMC6191176          DOI: 10.1016/j.mad.2018.05.001

Source DB:  PubMed          Journal:  Mech Ageing Dev        ISSN: 0047-6374            Impact factor:   5.432


  73 in total

1.  Human aging is characterized by focused changes in gene expression and deregulation of alternative splicing.

Authors:  Lorna W Harries; Dena Hernandez; William Henley; Andrew R Wood; Alice C Holly; Rachel M Bradley-Smith; Hanieh Yaghootkar; Ambarish Dutta; Anna Murray; Timothy M Frayling; Jack M Guralnik; Stefania Bandinelli; Andrew Singleton; Luigi Ferrucci; David Melzer
Journal:  Aging Cell       Date:  2011-07-19       Impact factor: 9.304

2.  Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Authors:  Agnieszka Rybak-Wolf; Christin Stottmeister; Petar Glažar; Marvin Jens; Natalia Pino; Sebastian Giusti; Mor Hanan; Mikaela Behm; Osnat Bartok; Reut Ashwal-Fluss; Margareta Herzog; Luisa Schreyer; Panagiotis Papavasileiou; Andranik Ivanov; Marie Öhman; Damian Refojo; Sebastian Kadener; Nikolaus Rajewsky
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

3.  Noninvasive in vivo monitoring of tissue-specific global gene expression in humans.

Authors:  Winston Koh; Wenying Pan; Charles Gawad; H Christina Fan; Geoffrey A Kerchner; Tony Wyss-Coray; Yair J Blumenfeld; Yasser Y El-Sayed; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-05       Impact factor: 11.205

4.  Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain.

Authors:  Frederico A C Azevedo; Ludmila R B Carvalho; Lea T Grinberg; José Marcelo Farfel; Renata E L Ferretti; Renata E P Leite; Wilson Jacob Filho; Roberto Lent; Suzana Herculano-Houzel
Journal:  J Comp Neurol       Date:  2009-04-10       Impact factor: 3.215

5.  Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.

Authors:  Qiupeng Zheng; Chunyang Bao; Weijie Guo; Shuyi Li; Jie Chen; Bing Chen; Yanting Luo; Dongbin Lyu; Yan Li; Guohai Shi; Linhui Liang; Jianren Gu; Xianghuo He; Shenglin Huang
Journal:  Nat Commun       Date:  2016-04-06       Impact factor: 14.919

6.  FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons.

Authors:  Lorenzo Errichelli; Stefano Dini Modigliani; Pietro Laneve; Alessio Colantoni; Ivano Legnini; Davide Capauto; Alessandro Rosa; Riccardo De Santis; Rebecca Scarfò; Giovanna Peruzzi; Lei Lu; Elisa Caffarelli; Neil A Shneider; Mariangela Morlando; Irene Bozzoni
Journal:  Nat Commun       Date:  2017-03-30       Impact factor: 14.919

7.  Widespread splicing changes in human brain development and aging.

Authors:  Pavel Mazin; Jieyi Xiong; Xiling Liu; Zheng Yan; Xiaoyu Zhang; Mingshuang Li; Liu He; Mehmet Somel; Yuan Yuan; Yi-Ping Phoebe Chen; Na Li; Yuhui Hu; Ning Fu; Zhibin Ning; Rong Zeng; Hongyi Yang; Wei Chen; Mikhail Gelfand; Philipp Khaitovich
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

8.  Conserved microRNA editing in mammalian evolution, development and disease.

Authors:  Maria Warnefors; Angélica Liechti; Jean Halbert; Delphine Valloton; Henrik Kaessmann
Journal:  Genome Biol       Date:  2014-06-25       Impact factor: 13.583

9.  Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor.

Authors:  Yehoshua Enuka; Mattia Lauriola; Morris E Feldman; Aldema Sas-Chen; Igor Ulitsky; Yosef Yarden
Journal:  Nucleic Acids Res       Date:  2015-12-10       Impact factor: 16.971

10.  Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors:  Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2015-10-08       Impact factor: 11.361

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  25 in total

Review 1.  Molecular Signatures of the Aging Brain: Finding the Links Between Genes and Phenotypes.

Authors:  Giuseppe Lupo; Silvana Gaetani; Emanuele Cacci; Stefano Biagioni; Rodolfo Negri
Journal:  Neurotherapeutics       Date:  2019-07       Impact factor: 7.620

2.  Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.

Authors:  Annie Robic; Thomas Faraut; Sarah Djebali; Rosemarie Weikard; Katia Feve; Sarah Maman; Christa Kuehn
Journal:  RNA Biol       Date:  2019-06-03       Impact factor: 4.652

Review 3.  The RNA world of human ageing.

Authors:  J C Gomez-Verjan; E R Vazquez-Martinez; N A Rivero-Segura; R H Medina-Campos
Journal:  Hum Genet       Date:  2018-11-01       Impact factor: 4.132

Review 4.  Best practices to ensure robust investigation of circular RNAs: pitfalls and tips.

Authors:  Samantha Dodbele; Nebibe Mutlu; Jeremy E Wilusz
Journal:  EMBO Rep       Date:  2021-02-25       Impact factor: 8.807

Review 5.  Using Drosophila to uncover molecular and physiological functions of circRNAs.

Authors:  Aishwarya Krishnamoorthy; Sebastian Kadener
Journal:  Methods       Date:  2021-04-24       Impact factor: 3.608

Review 6.  Circular RNAs as Novel Regulators of β-Cell Functions under Physiological and Pathological Conditions.

Authors:  Flora Brozzi; Romano Regazzi
Journal:  Int J Mol Sci       Date:  2021-02-03       Impact factor: 5.923

Review 7.  Age-dependent changes and biomarkers of aging in Caenorhabditis elegans.

Authors:  Heehwa G Son; Ozlem Altintas; Eun Ji E Kim; Sujeong Kwon; Seung-Jae V Lee
Journal:  Aging Cell       Date:  2019-02-08       Impact factor: 9.304

8.  Exposure to Ionizing Radiation Triggers Prolonged Changes in Circular RNA Abundance in the Embryonic Mouse Brain and Primary Neurons.

Authors:  André Claude Mbouombouo Mfossa; Helene Thekkekara Puthenparampil; Auchi Inalegwu; Amelie Coolkens; Sarah Baatout; Mohammed A Benotmane; Danny Huylebroeck; Roel Quintens
Journal:  Cells       Date:  2019-07-26       Impact factor: 6.600

9.  NOVA2 regulates neural circRNA biogenesis.

Authors:  David Knupp; Daphne A Cooper; Yuhki Saito; Robert B Darnell; Pedro Miura
Journal:  Nucleic Acids Res       Date:  2021-07-09       Impact factor: 19.160

10.  DWNN-RLS: regularized least squares method for predicting circRNA-disease associations.

Authors:  Cheng Yan; Jianxin Wang; Fang-Xiang Wu
Journal:  BMC Bioinformatics       Date:  2018-12-31       Impact factor: 3.169

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