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Literature DB >> 29752966

Molecular Illustration in Research and Education: Past, Present, and Future.

Abstract

Two-dimensional illustration is used extensively to study and disseminate the results of structural molecular biology. Molecular graphics methods have been and continue to be developed to address the growing needs of the structural biology community, and there are currently many effective, turn-key methods for displaying and exploring molecular structure. Building on decades of experience in design, best-practice resources are available to guide creation of illustrations that are effective for research and education communities.

Entities: Chemical Disease Gene Species

Keywords: diagram; molecular graphics; science education; scientific publication; scientific visualization

Mesh：

Year: 2018 PMID： 29752966 PMCID： PMC6186494 DOI： 10.1016/j.jmb.2018.04.043

Source DB: PubMed Journal: J Mol Biol ISSN： 0022-2836 Impact factor: 5.469

34 in total

1. Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors: J D WATSON; F H CRICK
Journal: Nature Date: 1953-04-25 Impact factor: 49.962

Review 2. Visualization software for molecular assemblies.

Authors: Thomas D Goddard; Thomas E Ferrin
Journal: Curr Opin Struct Biol Date: 2007-08-28 Impact factor: 6.809

3. Recovering reasoning processes from user interactions.

Authors: Wenwen Dou; Dong Hyun Jeong; Felesia Stukes; William Ribarsky; Heather Richter Lipford; Remco Chang
Journal: IEEE Comput Graph Appl Date: 2009 May-Jun Impact factor: 2.088

4. Science education. Drawing to learn in science.

Authors: Shaaron Ainsworth; Vaughan Prain; Russell Tytler
Journal: Science Date: 2011-08-26 Impact factor: 47.728

5. Biochemistry. Integrative structural biology.

Authors: Andrew B Ward; Andrej Sali; Ian A Wilson
Journal: Science Date: 2013-02-22 Impact factor: 47.728

6. Solvent-accessible surfaces of proteins and nucleic acids.

Authors: M L Connolly
Journal: Science Date: 1983-08-19 Impact factor: 47.728

Review 7. The anatomy and taxonomy of protein structure.

Authors: J S Richardson
Journal: Adv Protein Chem Date: 1981

8. Interactive computer surface graphics approach to study of the active site of bovine trypsin.

Authors: R J Feldmann; D H Bing; B C Furie; B Furie
Journal: Proc Natl Acad Sci U S A Date: 1978-11 Impact factor: 11.205

9. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.

Authors: Eran Hodis; Jaime Prilusky; Eric Martz; Israel Silman; John Moult; Joel L Sussman
Journal: Genome Biol Date: 2008-08-03 Impact factor: 13.583

10. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.

Authors: David S Goodsell; Shuchismita Dutta; Christine Zardecki; Maria Voigt; Helen M Berman; Stephen K Burley
Journal: PLoS Biol Date: 2015-05-05 Impact factor: 8.029

8 in total

1. iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.

Authors: Jiyao Wang; Philippe Youkharibache; Dachuan Zhang; Christopher J Lanczycki; Renata C Geer; Thomas Madej; Lon Phan; Minghong Ward; Shennan Lu; Gabriele H Marchler; Yanli Wang; Stephen H Bryant; Lewis Y Geer; Aron Marchler-Bauer
Journal: Bioinformatics Date: 2020-01-01 Impact factor: 6.937

Molecular Illustration in Research and Education: Past, Present, and Future.

1. Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Review 2. Visualization software for molecular assemblies.

3. Recovering reasoning processes from user interactions.

4. Science education. Drawing to learn in science.

5. Biochemistry. Integrative structural biology.

6. Solvent-accessible surfaces of proteins and nucleic acids.

Review 7. The anatomy and taxonomy of protein structure.

8. Interactive computer surface graphics approach to study of the active site of bovine trypsin.

9. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.

10. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.

1. iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.

2. Shortcuts for faster image creation in PyMOL.

Review 3. Art and Science of the Cellular Mesoscale.

Review 4. Teaching microbiology in times of plague.

5. miR-155-5p predictive role to decelerate foam cell atherosclerosis through CD36, VAV3, and SOCS1 pathway.

6. Design - a new way to look at old molecules.

7. Templates for writing PyMOL scripts.

8. Powdered Activated Charcoal Tracing in Hand Hygiene Training and Compliance Assessment During the COVID-19 Pandemic.