Literature DB >> 29750074

The taxlist package: managing plant taxonomic lists in R.

Miguel Alvarez1, Federico Luebert1.   

Abstract

Taxonomic lists are crucial elements of vegetation-plot databases and provide the links between original entries, reference taxon views and different taxon concepts. We introduce the R package taxlist in the context of object-oriented modelling for taxonomic lists. This package provides a data structure based on species lists in Turboveg, which is a software broadly used for the storage of vegetation-plot databases and implements functions for importing and handling them prior to statistical analysis. We also present a schema for relational databases, compatible with taxlist objects and recommend its use for handling diversity records.

Entities:  

Keywords:  Turboveg; database; ecoinformatics; taxon concept; taxon view; vegtable

Year:  2018        PMID: 29750074      PMCID: PMC5943443          DOI: 10.3897/BDJ.6.e23635

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN: 1314-2828


  3 in total

1.  Taxonomy: stable taxon boundaries.

Authors:  Norbert Holstein; Federico Luebert
Journal:  Nature       Date:  2017-08-09       Impact factor: 49.962

2.  taxize: taxonomic search and retrieval in R.

Authors:  Scott A Chamberlain; Eduard Szöcs
Journal:  F1000Res       Date:  2013-09-18

3.  Darwin Core: an evolving community-developed biodiversity data standard.

Authors:  John Wieczorek; David Bloom; Robert Guralnick; Stan Blum; Markus Döring; Renato Giovanni; Tim Robertson; David Vieglais
Journal:  PLoS One       Date:  2012-01-06       Impact factor: 3.240

  3 in total

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