| Literature DB >> 29746631 |
Lone Simonsen1,2, Elizabeth Higgs3, Robert J Taylor4, Deborah Wentworth5, Al Cozzi-Lepri6, Sarah Pett7,8, Dominic E Dwyer9, Richard Davey3, Ruth Lynfield10, Marcelo Losso11, Kathleen Morales4, Marshall J Glesby12, Jozef Weckx13, Dianne Carey8, Cliff Lane3, Jens Lundgren1.
Abstract
Background: Early clinical severity assessments during the 2009 influenza A H1N1 pandemic (pH1N1) overestimated clinical severity due to selection bias and other factors. We retrospectively investigated how to use data from the International Network for Strategic Initiatives in Global HIV Trials, a global clinical influenza research network, to make more accurate case fatality ratio (CFR) estimates early in a future pandemic, an essential part of pandemic response.Entities:
Mesh:
Year: 2018 PMID: 29746631 PMCID: PMC6248856 DOI: 10.1093/cid/ciy088
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 9.079
Evolution of the Estimated Case Fatality Ratio Over Time
| Report | Date of Publication | Setting | Estimated Case Fatality Ratio (%) | Severity |
|---|---|---|---|---|
| World Health Organization report [ | May 2009 | Early outbreaks Mexico | 2 | 1918-like |
| Fraser et al [ | June 2009 | First wave Mexico | 0.4 | 1957-like |
| Castro-Jiménez et al [ | July 2009 | First wave Colombia | 3.8 | 1918-like |
| Baker et al [ | July 2009 | New Zealand first complete season | 0.1 | 1968-like |
| Presanis et al [ | September 2009 | First wave in 2 US cities | 0.04 | 1968-like |
| Van Kerkhove et al [ | January 2013 | Global estimate for first season, CONCISE Network | 0.02 | Seasonal |
See also Wong et al [3].
Figure 1.Map of International Network for Strategic Initiatives in Global HIV Trials influenza protocol patient intake sites. Blue markers indicate FLU002 outpatient sites and red markers indicate FLU003 inpatient sites.
Findings on Clinical Symptoms, Demographics, and Underlying Illness from FLU003 and FLU002 Protocols
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| 150 | 744 | 282 | 642 (L) | 392 (M) | 559 | |
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| 41 (18–86) | 39 (18–92) | 48 (19–87) | … | ... | 30 (18–73) | |
| Major symptoms (%) | Fever | 100 | 87 | ... | 94 | 94 | ... |
| Cough or sore throat | 93 | 88 | ... | 92 | 85 | ... | |
| Gastrointestinal symptoms | 26 | 34 | ... | 25 | 28 | ... | |
| Myalgia | 51 | 41 | ... | ... | 80 | ... | |
| Headache | 45 | 22 | ... | ... | 84 | ... | |
| Shortness of breath | 73 | 66 | ... | ... | 44 | ... | |
| Comorbidities (%) | At least 1 comorbidity | 83 | >72 | 55 | 4 | 11 | 16 |
| Pregnant (of women in study) | 11 | 13 | 10 | ... | 1 | 2 | |
| Immunosuppression | 19 | 20 | 11 | 0.4 | 1 | 1 | |
| Human immunodeficiency virus only | ... | 15 | 4 | ... | ... | 8 | |
| Cardiovascular disease | 20 | 19 | 14 | 0.4 | 1.0 | 0.4 | |
| Chronic obstructive pulmonary disease | 15 | 16 | 11 | 2.5 | 8 | 0.7 | |
| Asthma | 27 | 21 | 17 | ||||
| Diabetes | 25 | 15 | 11 | ... | 1.3 | 2 | |
| Other factors (%) | Influenza vaccination | 44 | ... | 23 | ... | 10 | 14 |
| Obesity (BMI >30) | 55 | 58 | 25 | ... | ... | 16 | |
| Morbid obesity (BMI ≥40) | 26 | 25 | 5 | ... | ... | 2 | |
| Smoker (ever) | 24 | ... | 59 | ... | ... | 21 | |
| Progression of illness (%) | Hospitalized | 100 | 100 | 100 | 9 | 6 | 5 |
| Died | 9 | 15 | 9 | 0.5 | 0 | 0.2 | |
| Intensive care unit | 29 | 34 | 26 | 3 | ... | 0.2 | |
| Chest X-ray infiltrate | 39 | 68 | ... | 4 | 0.8 | 0.7 | |
| Mechanical ventilation | 22 | 31 | 22 | 2 | 0.8 | 0.2 | |
| Sepsis | 12 | ... | 6 | ... | ... | 0 | |
| Treatment (%) | Antiviral use | 79 | 81 | 80 | 7 | 92 | 20 |
| Antibiotic use | 82 | ... | 83 | ... | 11 | ... | |
| Corticosteroid use | 39 | ... | 33 | ... | ... | ... | |
Data are for the pandemic period October 2009 through September 2011 and select studies that either presented or allowed extraction of similar findings for adults aged ≥18 years.
Abbreviations: BMI, body mass index; INSIGHT, International Network for Strategic Initiatives in Global HIV Trials.
Estimated Case Fatality Ratio among Medically Attended Cases
| Period | Age | Viral Subtype | N (Outpatient) | N (Inpatient) | P (H|ILI) | P (D|H) | Case Fatality Ratio/% (95% Confidence Interval) |
|---|---|---|---|---|---|---|---|
| Pandemic (2009–2011) | All ages | pH1N1 | 541 | 358 | 0.052 | 0.087 | 0.45 (0.23, 0.67) |
| H3N2 | 273 | 31 | 0.004 | 0.065 | * | ||
| B | 33 | 12 | 0.061 | 0.000 | * | ||
| Negative | 971 | 117 | 0.031 | 0.043 | 0.13 (0.01, 0.25) | ||
| 18–64 | pH1N1 | 539 | 313 | 0.052 | 0.083 | 0.43 (0.21, 0.65) | |
| H3N2 | 254 | 14 | 0.000 | 0.000 | * | ||
| B | 31 | 8 | 0.065 | 0.000 | * | ||
| Negative | 924 | 84 | 0.025 | 0.024 | * | ||
| 65+ | pH1N1 | 2 | 45 | 0.000 | 0.111 | * | |
| H3N2 | 19 | 17 | 0.053 | 0.118 | * | ||
| B | 2 | 4 | 0.000 | 0.000 | * | ||
| Negative | 47 | 33 | 0.149 | 0.091 | * | ||
| Post-pandemic (2012–2015) | All ages | pH1N1 | 667 | 218 | 0.019 | 0.046 | 0.09 (0.02, 0.16) |
| H3N2 | 1345 | 424 | 0.009 | 0.047 | 0.04 (0.01, 0.07) | ||
| B | 639 | 185 | 0.020 | 0.070 | 0.14 (0.04, 0.25) | ||
| Negative | 4089 | 422 | 0.018 | 0.107 | 0.19 (0.12, 0.26) | ||
| 18–64 | pH1N1 | 639 | 174 | 0.019 | 0.046 | 0.09 (0.01, 0.16) | |
| H3N2 | 1248 | 191 | 0.006 | 0.016 | 0.01 (0.00, 0.02) | ||
| B | 602 | 118 | 0.017 | 0.042 | 0.07 (0.00, 0.14) | ||
| Negative | 3778 | 244 | 0.016 | 0.057 | 0.09 (0.04, 0.14) | ||
| 65+ | pH1N1 | 28 | 44 | 0.036 | 0.045 | * | |
| H3N2 | 97 | 233 | 0.041 | 0.073 | * | ||
| B | 37 | 67 | 0.081 | 0.119 | * | ||
| Negative | 311 | 178 | 0.039 | 0.174 | 0.67 (0.24, 1.1) |
Data are for the pandemic and post-pandemic periods, computed as the product of the risk of FLU002 influenza-like illness outpatients getting hospitalized and the FLU003 hospitalized patients having died at day 60.
Abbreviations: P (D|H), probability of death given hospitalization; P (H|ILI) , probability of hospitalization given influenza-like illness.
*Case fatality rate not calculated when fewer than 100 outpatients or inpatients contained in any stratum.
Figure 2.A schematic representation of the pyramid modeling approach used to estimate the 2009 pandemic case fatality ratio among medically attended cases from probabilities of disease progression from International Network for Strategic Initiatives in Global HIV Trials outpatient (FLU002) and inpatient (FLU003) data. Modeling was also done for 18–64 and 65+ year age groups separately due to known differences in attack rates and preexisting immunity. Abbreviations: AR, all infected persons; CFR, case fatality ratio; ILI, influenza-like illness; MA, medically attended; P (D|H), probability of death given hospitalization; P (H|ILI) , probability of hospitalization given influenza-like illness.
Numbers of Patients Who Test Positive for Influenza, Probabilities of Progression to Hospitalization and Death, and Medically Attended Case Fatality Ratio by International Network for Strategic Initiatives in Global HIV Trials Geographic Region in the Post-Pandemic Period
| Region | Positive for Any Influenza (N) | Probabilities | Medically Attended Case Fatality Ratio (95% Confidence Interval) | ||
|---|---|---|---|---|---|
| FLU002 | FLU003 | P(H|ILI) | P(D|H) | ||
| Asia | 616 | 116 | 0.010 | 0.009 | 0.01% (−0.01, 0.03) |
| Australia | 10 | 106 | 0.000 | 0.010 | * |
| Europe | 678 | 280 | 0.028 | 0.068 | 0.19% (0.07, 0.31) |
| North America | 183 | 233 | 0.044 | 0.034 | 0.15% (0.01, 0.29) |
| South America | 1164 | 92 | 0.004 | 0.152 | * |
| All regions | 2651 | 827 | 0.014 | 0.052 | 0.07% (0.04, 0.11) |
Abbreviations: P (D|H), probability of death given hospitalization; P (H|ILI) , probability of hospitalization given influenza-like illness
*Case fatality ratio not calculated when fewer than 100 outpatients or inpatients contained in any stratum.
Conversion of Medically Attended Case Fatality Ratio (CFR) to CFR for All Infected Persons Estimates Using 2 UK Studies
| Source | Measure | Parameter | Estimate | Lower Bound | Upper Bound |
|---|---|---|---|---|---|
| This study | CFR based on persons with medically attended ILI | CFRMA | 0.4% | 0.2% | 0.6% |
| Brooks-Pollock et al [ | Probability of seeking medical care given ILI | P(ILIMA|ILI) | 0.25 | 0.25 | 0.25 |
| Hayward et al [ | Probability of having ILI symptoms given H1N1pdm infection (based on antibody titers) | P(ILI|Inf) | 0.25 | 0.25 | 0.25 |
| Multiplying the 3 figures | CFR based on persons with influenza infection | CFRAR | 0.03% | 0.01% | 0.04% |
Abbreviations: AR, attack rate; CFR, case fatality ratio; ILI, influenza-like illness; MA, medically attended.