Literature DB >> 29744889

Higher order genomic organization and regulatory compartmentalization for cell cycle control at the G1/S-phase transition.

Prachi N Ghule1, David J Seward2, Andrew J Fritz1, Joseph R Boyd1, Andre J van Wijnen3, Jane B Lian1, Janet L Stein1, Gary S Stein1.   

Abstract

Fidelity of histone gene regulation, and ultimately of histone protein biosynthesis, is obligatory for packaging of newly replicated DNA into chromatin. Control of histone gene expression within the 3-dimensional context of nuclear organization is reflected by two well documented observations. DNA replication-dependent histone mRNAs are synthesized at specialized subnuclear domains designated histone locus bodies (HLBs), in response to activation of the growth factor dependent Cyclin E/CDK2/HINFP/NPAT pathway at the G1/S transition in mammalian cells. Complete loss of the histone gene regulatory factors HINFP or NPAT disrupts HLB integrity that is necessary for coordinate control of DNA replication and histone gene transcription. Here we review the molecular histone-related requirements for G1/S-phase progression during the cell cycle. Recently developed experimental strategies, now enable us to explore mechanisms involved in dynamic control of histone gene expression in the context of the temporal (cell cycle) and spatial (HLBs) remodeling of the histone gene loci.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  HINFP; NPAT; higher order organization; histones

Mesh:

Substances:

Year:  2018        PMID: 29744889      PMCID: PMC6043376          DOI: 10.1002/jcp.26741

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  69 in total

1.  Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest.

Authors:  Xiaofen Ye; Alexa A Franco; Hidelita Santos; David M Nelson; Paul D Kaufman; Peter D Adams
Journal:  Mol Cell       Date:  2003-02       Impact factor: 17.970

2.  The histone gene transcription factor HiNF-P stabilizes its cell cycle regulatory co-activator p220NPAT.

Authors:  Ricardo Medina; Andre J van Wijnen; Gary S Stein; Janet L Stein
Journal:  Biochemistry       Date:  2006-12-26       Impact factor: 3.162

Review 3.  Formation of the 3' end of histone mRNA: getting closer to the end.

Authors:  Zbigniew Dominski; William F Marzluff
Journal:  Gene       Date:  2007-05-04       Impact factor: 3.688

4.  Expression of NPAT, a novel substrate of cyclin E-CDK2, promotes S-phase entry.

Authors:  J Zhao; B Dynlacht; T Imai; T Hori; E Harlow
Journal:  Genes Dev       Date:  1998-02-15       Impact factor: 11.361

5.  Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

Authors:  Harianto Tjong; Wenyuan Li; Reza Kalhor; Chao Dai; Shengli Hao; Ke Gong; Yonggang Zhou; Haochen Li; Xianghong Jasmine Zhou; Mark A Le Gros; Carolyn A Larabell; Lin Chen; Frank Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

6.  Coordinate regulation of multiple histone mRNAs during the cell cycle in HeLa cells.

Authors:  M Plumb; J Stein; G Stein
Journal:  Nucleic Acids Res       Date:  1983-04-25       Impact factor: 16.971

7.  Cell cycle regulation of histone H4 gene transcription requires the oncogenic factor IRF-2.

Authors:  P S Vaughan; C M van der Meijden; F Aziz; H Harada; T Taniguchi; A J van Wijnen; J L Stein; G S Stein
Journal:  J Biol Chem       Date:  1998-01-02       Impact factor: 5.157

8.  Establishment of histone gene regulation and cell cycle checkpoint control in human embryonic stem cells.

Authors:  Klaus A Becker; Janet L Stein; Jane B Lian; Andre J van Wijnen; Gary S Stein
Journal:  J Cell Physiol       Date:  2007-02       Impact factor: 6.384

Review 9.  Cell cycle dependent phosphorylation and subnuclear organization of the histone gene regulator p220(NPAT) in human embryonic stem cells.

Authors:  Prachi N Ghule; Klaus A Becker; J Wade Harper; Jane B Lian; Janet L Stein; Andre J van Wijnen; Gary S Stein
Journal:  J Cell Physiol       Date:  2007-10       Impact factor: 6.384

Review 10.  The dynamic architectural and epigenetic nuclear landscape: developing the genomic almanac of biology and disease.

Authors:  Phillip W L Tai; Sayyed K Zaidi; Hai Wu; Rodrigo A Grandy; Martin Montecino; André J van Wijnen; Jane B Lian; Gary S Stein; Janet L Stein
Journal:  J Cell Physiol       Date:  2014-06       Impact factor: 6.384

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  6 in total

1.  SBTD: A Novel Method for Detecting Topological Associated Domains from Hi-C Data.

Authors:  Chunlin Long; Yinjing Liao; Yizhou Li; Jianrong Yan; Min Zhu; Menglong Li
Journal:  Interdiscip Sci       Date:  2021-06-23       Impact factor: 2.233

Review 2.  Higher order genomic organization and epigenetic control maintain cellular identity and prevent breast cancer.

Authors:  A J Fritz; N E Gillis; D L Gerrard; P D Rodriguez; D Hong; J T Rose; P N Ghule; E L Bolf; J A Gordon; C E Tye; J R Boyd; K M Tracy; J A Nickerson; A J van Wijnen; A N Imbalzano; J L Heath; S E Frietze; S K Zaidi; F E Carr; J B Lian; J L Stein; G S Stein
Journal:  Genes Chromosomes Cancer       Date:  2019-03-15       Impact factor: 5.006

3.  Hinfp is a guardian of the somatic genome by repressing transposable elements.

Authors:  Niraj K Nirala; Qi Li; Prachi N Ghule; Hsi-Ju Chen; Rui Li; Lihua Julie Zhu; Ruijia Wang; Nicholas P Rice; Junhao Mao; Janet L Stein; Gary S Stein; Andre J van Wijnen; Y Tony Ip
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-12       Impact factor: 11.205

Review 4.  Chromosome territories and the global regulation of the genome.

Authors:  Andrew J Fritz; Nitasha Sehgal; Artem Pliss; Jinhui Xu; Ronald Berezney
Journal:  Genes Chromosomes Cancer       Date:  2019-03-18       Impact factor: 5.006

5.  CCNY Accelerates Cylcin E Expression to Regulate the Proliferation of Laryngeal Carcinoma Cells via MEK/ERK Signaling Pathway.

Authors:  Xiaoting Zhao; Mei Jiang; Ziyu Wang; Xiaohong Chen; Hongzhen Wang; Wentao Yue; Chao Cai
Journal:  Cancer Manag Res       Date:  2020-06-23       Impact factor: 3.989

6.  Elevated nuclear auto-antigenic sperm protein promotes melanoma progression by inducing cell proliferation.

Authors:  Jia-Xia Li; Chuan-Yuan Wei; Shu-Gang Cao; Ming-Wu Xia
Journal:  Onco Targets Ther       Date:  2019-03-21       Impact factor: 4.147

  6 in total

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