Literature DB >> 29742900

Crowding Stabilizes DMSO-Water Hydrogen-Bonding Interactions.

Kwang-Im Oh1, Carlos R Baiz1.   

Abstract

Up to 40% of intracellular water is confined due to the dense packing of macromolecules, ions, and osmolytes. Despite the large body of work concerning the effect of additives on the biomolecular structure and stability, the role of crowding and heterogeneity in these interactions is not well understood. Here, infrared spectroscopy and molecular dynamics simulations are used to describe the mechanisms by which crowding modulates hydrogen bonding interactions between water and dimethyl sulfoxide (DMSO). Specifically, we use formamide and dimethylformamide (DMF) as molecular crowders and show that the S═O hydrogen bond populations in aqueous mixtures are increased by both amides. These additives increase the amount of water within the DMSO first solvation shell through two mechanisms: (a) directly stabilizing water-DMSO hydrogen bonds; (b) increasing water exposure by destabilizing DMSO-DMSO self-interactions. Further, we quantified the hydrogen bond enthalpies between the different components: DMSO-water (61 kJ/mol) > DMSO-formamide (32 kJ/mol) > water-water (23 kJ/mol) ≫ formamide-water (4.7 kJ/mol). Spectra of carbonyl stretching vibrations show that DMSO induces the dehydration of amides as a result of strong DMSO-water interactions, which has been suggested as the main mechanism of protein destabilization.

Entities:  

Year:  2018        PMID: 29742900     DOI: 10.1021/acs.jpcb.8b02739

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  A Different hIAPP Polymorph Is Observed in Human Serum Than in Aqueous Buffer: Demonstration of a New Method for Studying Amyloid Fibril Structure Using Infrared Spectroscopy.

Authors:  Caitlyn R Fields; Sidney S Dicke; Megan K Petti; Martin T Zanni; Justin P Lomont
Journal:  J Phys Chem Lett       Date:  2020-07-24       Impact factor: 6.475

2.  Intramolecular Charge Transfer of Curcumin and Solvation Dynamics of DMSO Probed by Time-Resolved Raman Spectroscopy.

Authors:  Myungsam Jen; Sebok Lee; Gisang Lee; Daedu Lee; Yoonsoo Pang
Journal:  Int J Mol Sci       Date:  2022-02-02       Impact factor: 5.923

3.  Investigating water/oil interfaces with opto-thermophoresis.

Authors:  Youngsun Kim; Hongru Ding; Yuebing Zheng
Journal:  Nat Commun       Date:  2022-06-29       Impact factor: 17.694

4.  How cryoprotectants work: hydrogen-bonding in low-temperature vitrified solutions.

Authors:  Euihyun Lee; Carlos R Baiz
Journal:  Chem Sci       Date:  2022-08-08       Impact factor: 9.969

5.  NMR Relaxation Dispersion Reveals Macrocycle Breathing Dynamics in a Cyclodextrin-based Rotaxane.

Authors:  Shannon Stoffel; Qi-Wei Zhang; Dong-Hao Li; Bradley D Smith; Jeffrey W Peng
Journal:  J Am Chem Soc       Date:  2020-04-08       Impact factor: 15.419

  5 in total

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