Literature DB >> 29741906

Hydration of Atmospheric Molecular Clusters: A New Method for Systematic Configurational Sampling.

Jens Vive Kildgaard1, Kurt V Mikkelsen1, Merete Bilde2, Jonas Elm2.   

Abstract

We present a new systematic configurational sampling algorithm for investigating the potential energy surface of hydrated atmospheric molecular clusters. The algorithm is based on creating a Fibonacci sphere around each atom in the cluster and adding water molecules to each point in nine different orientations. For the sampling of water molecules to existing hydrogen bonds, the cluster is displaced along the hydrogen bond, and a water molecule is placed in between in three different orientations. Generated redundant structures are eliminated based on minimizing the root-mean-square distance of different conformers. Initially, the clusters are sampled using the semiempirical PM6 method and subsequently using density functional theory (M06-2X and ωB97X-D) with the 6-31++G(d,p) basis set. Applying the developed algorithm, we study the hydration of sulfuric acid with up to 15 water molecules. We find that the addition of the first four water molecules "saturate" the sulfuric acid molecule and that they are more thermodynamically favorable than the addition of water molecules 5-15. Using the large generated set of conformers, we assess the performance of approximate methods (ωB97X-D, M06-2X, PW91, and PW6B95-D3) in calculating the binding energies and assigning the global minimum conformation compared to high level CCSD(T)-F12a/VDZ-F12 reference calculations. The tested DFT functionals systematically overestimate the binding energies compared to coupled cluster calculations, and we find that this deficiency can be corrected by a simple scaling factor.

Entities:  

Year:  2018        PMID: 29741906     DOI: 10.1021/acs.jpca.8b02758

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

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Journal:  ACS Omega       Date:  2022-04-20

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Authors:  Sarah E Waller; Yi Yang; Eleanor Castracane; John J Kreinbihl; Kathleen A Nickson; Christopher J Johnson
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Journal:  J Comput Aided Mol Des       Date:  2021-01-09       Impact factor: 3.686

4.  Modeling the Binding Free Energy of Large Atmospheric Sulfuric Acid-Ammonia Clusters.

Authors:  Morten Engsvang; Jonas Elm
Journal:  ACS Omega       Date:  2022-02-24

5.  Clusteromics IV: The Role of Nitric Acid in Atmospheric Cluster Formation.

Authors:  Yosef Knattrup; Jonas Elm
Journal:  ACS Omega       Date:  2022-08-23
  5 in total

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