Literature DB >> 29738820

Classification of forensic autopsy reports through conceptual graph-based document representation model.

Ghulam Mujtaba1, Liyana Shuib2, Ram Gopal Raj3, Retnagowri Rajandram4, Khairunisa Shaikh5, Mohammed Ali Al-Garadi6.   

Abstract

Text categorization has been used extensively in recent years to classify plain-text clinical reports. This study employs text categorization techniques for the classification of open narrative forensic autopsy reports. One of the key steps in text classification is document representation. In document representation, a clinical report is transformed into a format that is suitable for classification. The traditional document representation technique for text categorization is the bag-of-words (BoW) technique. In this study, the traditional BoW technique is ineffective in classifying forensic autopsy reports because it merely extracts frequent but discriminative features from clinical reports. Moreover, this technique fails to capture word inversion, as well as word-level synonymy and polysemy, when classifying autopsy reports. Hence, the BoW technique suffers from low accuracy and low robustness unless it is improved with contextual and application-specific information. To overcome the aforementioned limitations of the BoW technique, this research aims to develop an effective conceptual graph-based document representation (CGDR) technique to classify 1500 forensic autopsy reports from four (4) manners of death (MoD) and sixteen (16) causes of death (CoD). Term-based and Systematized Nomenclature of Medicine-Clinical Terms (SNOMED CT) based conceptual features were extracted and represented through graphs. These features were then used to train a two-level text classifier. The first level classifier was responsible for predicting MoD. In addition, the second level classifier was responsible for predicting CoD using the proposed conceptual graph-based document representation technique. To demonstrate the significance of the proposed technique, its results were compared with those of six (6) state-of-the-art document representation techniques. Lastly, this study compared the effects of one-level classification and two-level classification on the experimental results. The experimental results indicated that the CGDR technique achieved 12% to 15% improvement in accuracy compared with fully automated document representation baseline techniques. Moreover, two-level classification obtained better results compared with one-level classification. The promising results of the proposed conceptual graph-based document representation technique suggest that pathologists can adopt the proposed system as their basis for second opinion, thereby supporting them in effectively determining CoD.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Forensic autopsy reports; Graph-based text classification; SNOMED CT concepts and descriptors; Supervised machine learning; Text classification

Mesh:

Year:  2018        PMID: 29738820     DOI: 10.1016/j.jbi.2018.04.013

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  3 in total

1.  Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review.

Authors:  Christophe Gaudet-Blavignac; Vasiliki Foufi; Mina Bjelogrlic; Christian Lovis
Journal:  J Med Internet Res       Date:  2021-01-26       Impact factor: 5.428

2.  Using text mining techniques to extract prostate cancer predictive information (Gleason score) from semi-structured narrative laboratory reports in the Gauteng province, South Africa.

Authors:  Naseem Cassim; Michael Mapundu; Victor Olago; Turgay Celik; Jaya Anna George; Deborah Kim Glencross
Journal:  BMC Med Inform Decis Mak       Date:  2021-11-25       Impact factor: 2.796

3.  Performance evaluation of machine learning and Computer Coded Verbal Autopsy (CCVA) algorithms for cause of death determination: A comparative analysis of data from rural South Africa.

Authors:  Michael T Mapundu; Chodziwadziwa W Kabudula; Eustasius Musenge; Victor Olago; Turgay Celik
Journal:  Front Public Health       Date:  2022-09-27
  3 in total

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