| Literature DB >> 29736800 |
Alejandro Granados1, Vejay Vakharia2,3,4, Roman Rodionov3,4, Martin Schweiger2, Sjoerd B Vos2,4, Aidan G O'Keeffe5, Kuo Li4,6, Chengyuan Wu7, Anna Miserocchi3, Andrew W McEvoy3, Matthew J Clarkson2, John S Duncan3,4, Rachel Sparks2, Sébastien Ourselin2,8.
Abstract
PURPOSE: The accurate and automatic localisation of SEEG electrodes is crucial for determining the location of epileptic seizure onset. We propose an algorithm for the automatic segmentation of electrode bolts and contacts that accounts for electrode bending in relation to regional brain anatomy.Entities:
Keywords: Automatic segmentation; Bending; Epilepsy; SEEG
Mesh:
Year: 2018 PMID: 29736800 PMCID: PMC5973981 DOI: 10.1007/s11548-018-1740-8
Source DB: PubMed Journal: Int J Comput Assist Radiol Surg ISSN: 1861-6410 Impact factor: 2.924
Fig. 1Flow chart of algorithm pipeline
Fig. 2Input images: a post-SEEG implantation CT, b MRI T1, and c parcellation
Fig. 3a Axial, b sagittal and c coronal planes showing computed masks of the brain (cyan), skull and scalp (yellow) together with the result of connected components filters of contacts (red), bolt head (green), and the section of the bolt crossing the skull (blue)
Geometrical analysis, , and discriminant analysis of bolt heads and contacts
| Geometrical analysis | Discriminant analysis | ||||
|---|---|---|---|---|---|
| Number of Pixels | Elongation | Roundness | Number of pixels | Roundness | |
| Bolt head | 329.4 (183.5) | 2.51 (0.59) | 0.63 (0.06) | > 100 | [0.4, 1.0] |
| Contact | 9.7 (6.6) | 2.52 (1.27) | 1.10 (0.06) | [3, 50] | |
Fig. 4Search strategy given the direction of the bolt and constraints (distance and angle)
Fig. 5Modelling of electrodes as elastic rods. Bolt head (green) and body (blue) with contacts (red) modelled as point particles and ghost particles (cyan) created orthogonally along the electrode with material frames located between contacts
Fig. 6Automatic segmentation of electrodes interface and GUI for manual adjustment
Fig. 7Top: Number of contacts initially segmented and assigned to electrodes via a bolt head and bolt bodies association (step 2), projected (step 3), predicted (step 4), and left unassigned and available in pool. Bottom: Number of contacts correctly segmented (TrP—true positives), wrongly segmented (FP) and missed (FN) in 23 data sets (order by number of electrodes)
Fig. 8Examples: a segmented bolt head and contacts of electrodes overlaying CT; b contacts predicted at the skull and scalp level; c 22 FP (red marks along the skull); and d our worst case with 3 contacts not segmented due to crossings and 4 FNs
Validation between manual and automatic segmentation
| Measure | Manual vs automatic | Statistical test | Result | |
|---|---|---|---|---|
| Contact position | MAE ( | M1: 0.38 mm, 0.24, 0.22 | Paired | t (106) = − 1.756, |
| M2: 0.40 mm; 0.22, 0.26 | Pearson correlation | |||
| Cronbach’s alpha | 0.615 | |||
| MAE ( | M1: (0.14, 0.15, 0.27) mm | |||
| M2: (0.17, 0.15, 0.26) mm | ||||
| RMSD | M1: 0.45 | |||
| M2: 0.45 | ||||
| Bolt angle M1: N=95/224 | mean angle difference | M1: 0.59 | Paired | t (94) = − 4.54, |
| M2: 0.22 | t (112) = 1.533, | |||
| Pearson correlation | ||||
| Cronbach’s alpha | 0.995 | |||
| 0.992 | ||||
| M2: | displacement error at first contact due to angle difference ( | M1: 0.68 mm, 0.81, 0.83 | Non-inferiority test | CI = (0.431, 0.926) tolerance = 2.29 mm |
| M2: 0.72 mm, 0.84, 0.81 | ||||
| Regions of anatomy | region of anatomy at first contact | Intra-class correlation | 0.76, | |
| distance between regions when in disagreement | 0.82 (0.78) mm |
Fig. 9Bolt angles. a Bolt from post-CT image and b manual identification of the direction along bolts by a clinical scientist. c, d (Inconspicuous) comparison of manual (pink) and automatic identification (rigid electrode shown in blue) of bolt direction of an outlier case with angle difference of and displacement error at the tip of mm
Fig. 10Anatomical regions traversal (top) and contact displacement (bottom) of automatically segmented electrodes with respect to a rigid electrode computed based on bolt direction
Fig. 11Generalisability and robustness tests. Our proposed algorithm using data from a different centre: a with smaller bolt heads, b contacts very close to each other, and c electrodes inserted deeply (pink electrode with insertion depth of 110 mm); Our data in SEEGA: d segmented contact positions (green fiducials) and implantation plan (pink fiducials)