Literature DB >> 29736719

Accessing the Open PHACTS Discovery Platform with Workflow Tools.

Daniela Digles1, Andrei Caracoti2, Edgar Jacoby3.   

Abstract

The Open PHACTS Discovery Platform integrates several public databases, which can be of interest when annotating the results of a phenotypic screening campaign. Workflow tools provide easy-to-customize possibilities to access the platform. Here, we describe how to create such workflows for two different workflow tools (KNIME and Pipeline Pilot), including a protocol to annotate compounds (e.g., phenotypic screening hits) with compound classification, known protein targets, and classifications of the targets.

Keywords:  KNIME; Open PHACTS; Phenotypic screening; Pipeline Pilot; Workflow tool

Mesh:

Year:  2018        PMID: 29736719     DOI: 10.1007/978-1-4939-7847-2_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  1 in total

1.  Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination.

Authors:  Jeremy J Yang; Christopher R Gessner; Joel L Duerksen; Daniel Biber; Jessica L Binder; Murat Ozturk; Brian Foote; Robin McEntire; Kyle Stirling; Ying Ding; David J Wild
Journal:  BMC Bioinformatics       Date:  2022-01-12       Impact factor: 3.169

  1 in total

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