Literature DB >> 29734317

Alternative models for sharing confidential biomedical data.

Justin Guinney1, Julio Saez-Rodriguez2,3.   

Abstract

Mesh：

Year:  2018        PMID： 29734317     DOI： 10.1038/nbt.4128

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  7 in total

1.  Advantages of a Truly Open-Access Data-Sharing Model.

Authors:  Monica M Bertagnolli; Oliver Sartor; Bruce A Chabner; Mace L Rothenberg; Sean Khozin; Charles Hugh-Jones; David M Reese; Martin J Murphy
Journal:  N Engl J Med       Date:  2017-03-23       Impact factor: 91.245

2.  Open-data contest unearths scientific gems - and controversy.

Authors:  Heidi Ledford
Journal:  Nature       Date:  2017-03-08       Impact factor: 49.962

3.  Breast-Cancer Tumor Size, Overdiagnosis, and Mammography Screening Effectiveness.

Authors:  H Gilbert Welch; Philip C Prorok; A James O'Malley; Barnett S Kramer
Journal:  N Engl J Med       Date:  2016-10-13       Impact factor: 91.245

4.  Toward Fairness in Data Sharing.

Authors:  P J Devereaux; Gordon Guyatt; Hertzel Gerstein; Stuart Connolly; Salim Yusuf
Journal:  N Engl J Med       Date:  2016-08-04       Impact factor: 91.245

5.  Sharing Data from Cardiovascular Clinical Trials--A Proposal.

Authors:  Manesh R Patel; Paul W Armstrong; Deepak L Bhatt; Eugene Braunwald; A John Camm; Keith A A Fox; Robert A Harrington; William R Hiatt; Stefan K James; Ajay J Kirtane; Martin B Leon; A Michael Lincoff; Kenneth W Mahaffey; Laura Mauri; Roxana Mehran; Shamir R Mehta; Gilles Montalescot; Stephen J Nicholls; Vlado Perkovic; Eric D Peterson; Stuart J Pocock; Matthew T Roe; Marc S Sabatine; Mikkael Sekeres; Scott D Solomon; Gabriel Steg; Gregg W Stone; Frans Van de Werf; Lars Wallentin; Harvey D White; Michael Gibson
Journal:  N Engl J Med       Date:  2016-08-04       Impact factor: 91.245

6.  Challenges: Crowdsourced solutions.

Authors:  Eric Bender
Journal:  Nature       Date:  2016-05-12       Impact factor: 49.962

7.  Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data.

Authors:  Justin Guinney; Tao Wang; Teemu D Laajala; Kimberly Kanigel Winner; J Christopher Bare; Elias Chaibub Neto; Suleiman A Khan; Gopal Peddinti; Antti Airola; Tapio Pahikkala; Tuomas Mirtti; Thomas Yu; Brian M Bot; Liji Shen; Kald Abdallah; Thea Norman; Stephen Friend; Gustavo Stolovitzky; Howard Soule; Christopher J Sweeney; Charles J Ryan; Howard I Scher; Oliver Sartor; Yang Xie; Tero Aittokallio; Fang Liz Zhou; James C Costello
Journal:  Lancet Oncol       Date:  2016-11-16       Impact factor: 41.316
  7 in total
  18 in total

1.  Design and validation of a FHIR-based EHR-driven phenotyping toolbox.

Authors:  Pascal S Brandt; Jennifer A Pacheco; Prakash Adekkanattu; Evan T Sholle; Sajjad Abedian; Daniel J Stone; David M Knaack; Jie Xu; Zhenxing Xu; Yifan Peng; Natalie C Benda; Fei Wang; Yuan Luo; Guoqian Jiang; Jyotishman Pathak; Luke V Rasmussen
Journal:  J Am Med Inform Assoc       Date:  2022-08-16       Impact factor: 7.942

2.  Open science practices in general and internal medicine journals, an observational study.

Authors:  Beatriz Tarazona-Alvarez; Natalia Zamora-Martinez; Veronica Garcia-Sanz; Vanessa Paredes-Gallardo; Carlos Bellot-Arcis; Rut Lucas-Dominguez; Antonio Vidal-Infer
Journal:  PLoS One       Date:  2022-05-31       Impact factor: 3.752

3.  Crowdsourced mapping of unexplored target space of kinase inhibitors.

Authors:  Anna Cichońska; Balaguru Ravikumar; Robert J Allaway; Fangping Wan; Sungjoon Park; Olexandr Isayev; Shuya Li; Michael Mason; Andrew Lamb; Ziaurrehman Tanoli; Minji Jeon; Sunkyu Kim; Mariya Popova; Stephen Capuzzi; Jianyang Zeng; Kristen Dang; Gregory Koytiger; Jaewoo Kang; Carrow I Wells; Timothy M Willson; Tudor I Oprea; Avner Schlessinger; David H Drewry; Gustavo Stolovitzky; Krister Wennerberg; Justin Guinney; Tero Aittokallio
Journal:  Nat Commun       Date:  2021-06-03       Impact factor: 14.919

4.  ProteinNet: a standardized data set for machine learning of protein structure.

Authors:  Mohammed AlQuraishi
Journal:  BMC Bioinformatics       Date:  2019-06-11       Impact factor: 3.169

5.  Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth.

Authors:  Adi L Tarca; Bálint Ármin Pataki; Roberto Romero; Marina Sirota; Yuanfang Guan; Rintu Kutum; Nardhy Gomez-Lopez; Bogdan Done; Gaurav Bhatti; Thomas Yu; Gaia Andreoletti; Tinnakorn Chaiworapongsa; Sonia S Hassan; Chaur-Dong Hsu; Nima Aghaeepour; Gustavo Stolovitzky; Istvan Csabai; James C Costello
Journal:  Cell Rep Med       Date:  2021-06-15

6.  A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.

Authors:  Allison Creason; David Haan; Kristen Dang; Kami E Chiotti; Matthew Inkman; Andrew Lamb; Thomas Yu; Yin Hu; Thea C Norman; Alex Buchanan; Marijke J van Baren; Ryan Spangler; M Rick Rollins; Paul T Spellman; Dmitri Rozanov; Jin Zhang; Christopher A Maher; Cristian Caloian; John D Watson; Sebastian Uhrig; Brian J Haas; Miten Jain; Mark Akeson; Mehmet Eren Ahsen; Gustavo Stolovitzky; Justin Guinney; Paul C Boutros; Joshua M Stuart; Kyle Ellrott
Journal:  Cell Syst       Date:  2021-06-18       Impact factor: 11.091

7.  Bringing Code to Data: Do Not Forget Governance.

Authors:  Christine Suver; Adrian Thorogood; Megan Doerr; John Wilbanks; Bartha Knoppers
Journal:  J Med Internet Res       Date:  2020-07-28       Impact factor: 5.428

8.  Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.

Authors:  Kyle Ellrott; Alex Buchanan; Allison Creason; Michael Mason; Thomas Schaffter; Bruce Hoff; James Eddy; John M Chilton; Thomas Yu; Joshua M Stuart; Julio Saez-Rodriguez; Gustavo Stolovitzky; Paul C Boutros; Justin Guinney
Journal:  Genome Biol       Date:  2019-09-10       Impact factor: 13.583

9.  Pathways to breast cancer screening artificial intelligence algorithm validation.

Authors:  Christoph I Lee; Nehmat Houssami; Joann G Elmore; Diana S M Buist
Journal:  Breast       Date:  2019-09-09       Impact factor: 4.380

10.  Model-to-Data Approach for Deep Learning in Optical Coherence Tomography Intraretinal Fluid Segmentation.

Authors:  Nihaal Mehta; Cecilia S Lee; Luísa S M Mendonça; Khadija Raza; Phillip X Braun; Jay S Duker; Nadia K Waheed; Aaron Y Lee
Journal:  JAMA Ophthalmol       Date:  2020-10-01       Impact factor: 8.253
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