Literature DB >> 29727582

Along the Central Dogma-Controlling Gene Expression with Small Molecules.

Tilman Schneider-Poetsch1, Minoru Yoshida1,2.   

Abstract

The central dogma of molecular biology, that DNA is transcribed into RNA and RNA translated into protein, was coined in the early days of modern biology. Back in the 1950s and 1960s, bacterial genetics first opened the way toward understanding life as the genetically encoded interaction of macromolecules. As molecular biology progressed and our knowledge of gene control deepened, it became increasingly clear that expression relied on many more levels of regulation. In the process of dissecting mechanisms of gene expression, specific small-molecule inhibitors played an important role and became valuable tools of investigation. Small molecules offer significant advantages over genetic tools, as they allow inhibiting a process at any desired time point, whereas mutating or altering the gene of an important regulator would likely result in a dead organism. With the advent of modern sequencing technology, it has become possible to monitor global cellular effects of small-molecule treatment and thereby overcome the limitations of classical biochemistry, which usually looks at a biological system in isolation. This review focuses on several molecules, especially natural products, that have played an important role in dissecting gene expression and have opened up new fields of investigation as well as clinical venues for disease treatment.

Keywords:  RNA metabolism; chemical biology; gene expression; natural products; transcription; translation

Mesh:

Substances:

Year:  2018        PMID: 29727582     DOI: 10.1146/annurev-biochem-060614-033923

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  10 in total

1.  Performance Analysis of Deep Learning Models for Binary Classification of Cancer Gene Expression Data.

Authors:  Subhasree Majumder; Vipin Pal; Anju Yadav; Amitabha Chakrabarty
Journal:  J Healthc Eng       Date:  2022-03-09       Impact factor: 2.682

2.  Bottlebrush polymers with flexible enantiomeric side chains display differential biological properties.

Authors:  Hung V-T Nguyen; Yivan Jiang; Somesh Mohapatra; Wencong Wang; Jonathan C Barnes; Nathan J Oldenhuis; Kathleen K Chen; Simon Axelrod; Zhihao Huang; Qixian Chen; Matthew R Golder; Katherine Young; Dylan Suvlu; Yizhi Shen; Adam P Willard; Michael J A Hore; Rafael Gómez-Bombarelli; Jeremiah A Johnson
Journal:  Nat Chem       Date:  2021-11-25       Impact factor: 24.274

3.  Childhood Obesity-Related Mechanisms: MicroRNome and Transcriptome Changes in a Nested Case-Control Study.

Authors:  Jin Hee Kim; Da Hae Kim; Youn-Hee Lim; Choong Ho Shin; Young Ah Lee; Bung-Nyun Kim; Johanna Inhyang Kim; Yun-Chul Hong
Journal:  Biomedicines       Date:  2021-07-23

4.  Discovery of Surfactins as Inhibitors of MicroRNA Processing Using Cat-ELCCA.

Authors:  Andrew W Robertson; Jorge Sandoval; Osama G Mohamed; Yihao Zhuang; Erin E Gallagher; Jennifer Schmidt; Lisa Caratelli; Arya Menon; Pamela J Schultz; Rachel M Torrez; Catherine L Hay; Bailey A Bell; Paul A Price; Amanda L Garner; Ashootosh Tripathi
Journal:  ACS Med Chem Lett       Date:  2021-04-02       Impact factor: 4.632

Review 5.  Targeting Akt-associated microRNAs for cancer therapeutics.

Authors:  Mir S Adil; Daulat Khulood; Payaningal R Somanath
Journal:  Biochem Pharmacol       Date:  2020-12-24       Impact factor: 6.100

6.  Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells.

Authors:  Guoliang Li; Gregor Neuert
Journal:  Sci Data       Date:  2019-06-17       Impact factor: 6.444

Review 7.  Finding Correlations Between mRNA and Protein Levels in Leishmania Development: Is There a Discrepancy?

Authors:  Leonardo Cortazzo da Silva; Juliana Ide Aoki; Lucile Maria Floeter-Winter
Journal:  Front Cell Infect Microbiol       Date:  2022-07-12       Impact factor: 6.073

Review 8.  Circular RNAs regulate parental gene expression: A new direction for molecular oncology research.

Authors:  Haicun Wang; Xin Gao; Shaobo Yu; Weina Wang; Guanglin Liu; Xingming Jiang; Dongsheng Sun
Journal:  Front Oncol       Date:  2022-08-25       Impact factor: 5.738

Review 9.  A description of the relationship in healthy longevity and aging-related disease: from gene to protein.

Authors:  Xiaolin Ni; Zhaoping Wang; Danni Gao; Huiping Yuan; Liang Sun; Xiaoquan Zhu; Qi Zhou; Ze Yang
Journal:  Immun Ageing       Date:  2021-06-25       Impact factor: 6.400

10.  Versatile Target-Guided Screen for Discovering Bidirectional Transcription Inhibitors of a Trinucleotide Repeat Disease.

Authors:  Lauren D Hagler; Sarah B Krueger; Long M Luu; Amie N Lanzendorf; Niya L Mitchell; J Ignacio Vergara; L Daniel Curet; Steven C Zimmerman
Journal:  ACS Med Chem Lett       Date:  2021-05-21       Impact factor: 4.632

  10 in total

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