Literature DB >> 29727006

Alternative Splicing and Cross-Talk with Light Signaling.

You-Liang Cheng1, Shih-Long Tu1.   

Abstract

Alternative splicing (AS) is the main source of proteome diversity that in large part contributes to the complexity of eukaryotes. Recent global analysis of AS with RNA sequencing has revealed that AS is prevalent in plants, particularly when responding to environmental changes. Light is one of the most important environmental factors for plant growth and development. To optimize light absorption, plants evolve complex photoreceptors and signaling systems to regulate gene expression and biological processes in the cell. Genome-wide analyses have shown that light induces intensive AS in plants. However, the biochemical mechanisms of light regulating AS remain poorly understood. In this review, we aim to discuss recent progress in investigating the functions of AS, discovery of cross-talk between AS and light signaling, and the potential mechanism of light-regulated AS. Understanding how light signaling regulates the efficiency of AS and the biological significance of light-regulated AS in plant systems will provide new insights into the adaptation of plants to their environment and, ultimately, crop improvement.

Entities:  

Mesh:

Year:  2018        PMID: 29727006     DOI: 10.1093/pcp/pcy089

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  12 in total

1.  Unique and contrasting effects of light and temperature cues on plant transcriptional programs.

Authors:  Mai Jarad; Rea Antoniou-Kourounioti; Jo Hepworth; Julia I Qüesta
Journal:  Transcription       Date:  2020-10-04

2.  Coordinated Regulation of Pre-mRNA Splicing by the SFPS-RRC1 Complex to Promote Photomorphogenesis.

Authors:  Ruijiao Xin; Praveen Kumar Kathare; Enamul Huq
Journal:  Plant Cell       Date:  2019-07-02       Impact factor: 11.277

3.  The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis.

Authors:  Ping Chang; Hsin-Yu Hsieh; Shih-Long Tu
Journal:  Plant Cell       Date:  2022-02-03       Impact factor: 11.277

4.  Phytochrome Coordinates with a hnRNP to Regulate Alternative Splicing via an Exonic Splicing Silencer.

Authors:  Bou-Yun Lin; Chueh-Ju Shih; Hsin-Yu Hsieh; Hsiu-Chen Chen; Shih-Long Tu
Journal:  Plant Physiol       Date:  2019-09-09       Impact factor: 8.340

Review 5.  Light-regulated pre-mRNA splicing in plants.

Authors:  Praveen Kumar Kathare; Enamul Huq
Journal:  Curr Opin Plant Biol       Date:  2021-04-03       Impact factor: 9.396

Review 6.  New beginnings and new ends: methods for large-scale characterization of protein termini and their use in plant biology.

Authors:  Andreas Perrar; Nico Dissmeyer; Pitter F Huesgen
Journal:  J Exp Bot       Date:  2019-04-12       Impact factor: 6.992

Review 7.  Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants.

Authors:  Martina Legris; Yetkin Çaka Ince; Christian Fankhauser
Journal:  Nat Commun       Date:  2019-11-19       Impact factor: 14.919

8.  The Physcomitrella patens chromatin adaptor PpMRG1 interacts with H3K36me3 and regulates light-responsive alternative splicing.

Authors:  Chien-Chang Wang; Hsin-Yu Hsieh; Hsu-Liang Hsieh; Shih-Long Tu
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

9.  Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa).

Authors:  Zhenchao Yang; Zhao Yang; Yingge Xie; Qi Liu; Yanhao Mei; Yongjun Wu
Journal:  G3 (Bethesda)       Date:  2020-07-07       Impact factor: 3.154

10.  Alternative Splicing Regulation of Anthocyanin Biosynthesis in Camellia sinensis var. assamica Unveiled by PacBio Iso-Seq.

Authors:  Lijiao Chen; Xingyun Shi; Bo Nian; Shuangmei Duan; Bin Jiang; Xinghua Wang; Caiyou Lv; Guanghui Zhang; Yan Ma; Ming Zhao
Journal:  G3 (Bethesda)       Date:  2020-08-05       Impact factor: 3.154

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