Literature DB >> 29725490

Whole-Volume Clustering of Time Series Data from Zebrafish Brain Calcium Images via Mixture Modeling.

Hien D Nguyen1, Jeremy F P Ullmann2, Geoffrey J McLachlan3, Venkatakaushik Voleti4, Wenze Li4, Elizabeth M C Hillman4, David C Reutens5, Andrew L Janke5.   

Abstract

Calcium is a ubiquitous messenger in neural signaling events. An increasing number of techniques are enabling visualization of neurological activity in animal models via luminescent proteins that bind to calcium ions. These techniques generate large volumes of spatially correlated time series. A model-based functional data analysis methodology via Gaussian mixtures is suggested for the clustering of data from such visualizations is proposed. The methodology is theoretically justified and a computationally efficient approach to estimation is suggested. An example analysis of a zebrafish imaging experiment is presented.

Entities:  

Keywords:  Calcium imaging; Mixture model; Time series data; Zebrafish

Year:  2017        PMID: 29725490      PMCID: PMC5927610          DOI: 10.1002/sam.11366

Source DB:  PubMed          Journal:  Stat Anal Data Min        ISSN: 1932-1864            Impact factor:   1.051


  18 in total

1.  Descending control of swim posture by a midbrain nucleus in zebrafish.

Authors:  Tod R Thiele; Joseph C Donovan; Herwig Baier
Journal:  Neuron       Date:  2014-07-24       Impact factor: 17.173

Review 2.  Imaging calcium dynamics in dendritic spines.

Authors:  W Denk; R Yuste; K Svoboda; D W Tank
Journal:  Curr Opin Neurobiol       Date:  1996-06       Impact factor: 6.627

3.  Whole-brain functional imaging at cellular resolution using light-sheet microscopy.

Authors:  Misha B Ahrens; Michael B Orger; Drew N Robson; Jennifer M Li; Philipp J Keller
Journal:  Nat Methods       Date:  2013-03-18       Impact factor: 28.547

4.  Functional Profiles of Visual-, Auditory-, and Water Flow-Responsive Neurons in the Zebrafish Tectum.

Authors:  Andrew W Thompson; Gilles C Vanwalleghem; Lucy A Heap; Ethan K Scott
Journal:  Curr Biol       Date:  2016-02-25       Impact factor: 10.834

Review 5.  Neuronal calcium sensor proteins: generating diversity in neuronal Ca2+ signalling.

Authors:  Robert D Burgoyne
Journal:  Nat Rev Neurosci       Date:  2007-03       Impact factor: 34.870

6.  Central Limit Theorems and Uniform Laws of Large Numbers for Arrays of Random Fields.

Authors:  Nazgul Jenish; Ingmar R Prucha
Journal:  J Econom       Date:  2009-05       Impact factor: 2.388

7.  Imaging calcium concentration dynamics in small neuronal compartments.

Authors:  Ryohei Yasuda; Esther A Nimchinsky; Volker Scheuss; Thomas A Pologruto; Thomas G Oertner; Bernardo L Sabatini; Karel Svoboda
Journal:  Sci STKE       Date:  2004-02-03

8.  Swept confocally-aligned planar excitation (SCAPE) microscopy for high speed volumetric imaging of behaving organisms.

Authors:  Matthew B Bouchard; Venkatakaushik Voleti; César S Mendes; Clay Lacefield; Wesley B Grueber; Richard S Mann; Randy M Bruno; Elizabeth M C Hillman
Journal:  Nat Photonics       Date:  2015-02       Impact factor: 38.771

9.  Enhanced characterization of the zebrafish brain as revealed by super-resolution track-density imaging.

Authors:  Jeremy F P Ullmann; Fernando Calamante; Shaun P Collin; David C Reutens; Nyoman D Kurniawan
Journal:  Brain Struct Funct       Date:  2013-11-07       Impact factor: 3.270

10.  Ultrasensitive fluorescent proteins for imaging neuronal activity.

Authors:  Tsai-Wen Chen; Trevor J Wardill; Yi Sun; Stefan R Pulver; Sabine L Renninger; Amy Baohan; Eric R Schreiter; Rex A Kerr; Michael B Orger; Vivek Jayaraman; Loren L Looger; Karel Svoboda; Douglas S Kim
Journal:  Nature       Date:  2013-07-18       Impact factor: 49.962

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