| Literature DB >> 29724053 |
Debina Sarkar1,2, Ali Oghabian3, Pasani K Bodiyabadu4,5, Wayne R Joseph6, Euphemia Y Leung7,8, Graeme J Finlay9,10, Bruce C Baguley11, Marjan E Askarian-Amiri12,13.
Abstract
Entities:
Year: 2018 PMID: 29724053 PMCID: PMC5983800 DOI: 10.3390/ijms19051343
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Isoforms of circANRIL identified in this study using outward-facing primers against different exons. Isoforms shown in bold indicate isoforms common to NZM7 and NZM37 cells. The back-spliced junction for each isoform is indicated in brackets beside the isoform sequence. N1 and N2 denote novel exons.
| Target Exons for Outward Primers | NZM7 | NZM37 |
|---|---|---|
| Exon 2 | 2-5-6-2 | |
| Exon 4 | 4-5-6-9-10-4 (10-4) | |
| Exon 6 | 6-7-10-4-5-6 (10-4) | |
| Exon 7 | 7-5-6-7 (7-5) | |
| Exon 8 | 8-5-6-8 (8-5) | |
| Exon 14 | 14-5-6-14 (14-5) | |
| Exon 16 | 16-15-16 (16-15) |
Outward facing primers targeted against exons 2, 4, 6, 8, 14 and 16.
Figure S2EAlignment of isoforms derived from an outward-facing priming strategy against different linear ANRIL transcripts for exons 6 and 16.
Figure S3AVenn diagram indicating common and novel back-spliced exon junctions in NZM7 cells, NZM37 cells, and the published dataset in Burd et al. [2].