Literature DB >> 29720522

Complexities of Viral Mutation Rates.

Kayla M Peck1, Adam S Lauring2,3.   

Abstract

Many viruses evolve rapidly. This is due, in part, to their high mutation rates. Mutation rate estimates for over 25 viruses are currently available. Here, we review the population genetics of virus mutation rates. We specifically cover the topics of mutation rate estimation, the forces that drive the evolution of mutation rates, and how the optimal mutation rate can be context-dependent.
Copyright © 2018 American Society for Microbiology.

Keywords:  mutation rate evolution; polymerase; polymerase fidelity; viral mutation rates; virus evolution

Mesh：

Year:  2018        PMID： 29720522      PMCID： PMC6026756          DOI： 10.1128/JVI.01031-17

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  43 in total

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Authors:  J M J Travis; E R Travis
Journal:  Proc Biol Sci       Date:  2002-03-22       Impact factor: 5.349

Review 2.  Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies.

Authors:  Rafael Sanjuán
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

3.  Viral mutation rates: modelling the roles of within-host viral dynamics and the trade-off between replication fidelity and speed.

Authors:  Roland R Regoes; Steven Hamblin; Mark M Tanaka
Journal:  Proc Biol Sci       Date:  2012-11-07       Impact factor: 5.349

4.  Evolution of high mutation rates in experimental populations of E. coli.

Authors:  P D Sniegowski; P J Gerrish; R E Lenski
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

5.  Foot-and-mouth disease virus type O specific mutations determine RNA-dependent RNA polymerase fidelity and virus attenuation.

Authors:  Chen Li; Haiwei Wang; Tiangang Yuan; Andrew Woodman; Decheng Yang; Guohui Zhou; Craig E Cameron; Li Yu
Journal:  Virology       Date:  2018-02-20       Impact factor: 3.616

Review 6.  RNA Dependent RNA Polymerases: Insights from Structure, Function and Evolution.

Authors:  Sangita Venkataraman; Burra V L S Prasad; Ramasamy Selvarajan
Journal:  Viruses       Date:  2018-02-10       Impact factor: 5.048

Review 7.  Nidovirales: evolving the largest RNA virus genome.

Authors:  Alexander E Gorbalenya; Luis Enjuanes; John Ziebuhr; Eric J Snijder
Journal:  Virus Res       Date:  2006-02-28       Impact factor: 3.303

8.  The fitness effects of random mutations in single-stranded DNA and RNA bacteriophages.

Authors:  Pilar Domingo-Calap; José M Cuevas; Rafael Sanjuán
Journal:  PLoS Genet       Date:  2009-11-26       Impact factor: 5.917

9.  Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes.

Authors:  Jeff Clune; Dusan Misevic; Charles Ofria; Richard E Lenski; Santiago F Elena; Rafael Sanjuán
Journal:  PLoS Comput Biol       Date:  2008-09-26       Impact factor: 4.475

10.  From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses.

Authors:  Rafael Sanjuán
Journal:  PLoS Pathog       Date:  2012-05-03       Impact factor: 6.823
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  88 in total

Review 1.  Evolutionary Virology at 40.

Authors:  Jemma L Geoghegan; Edward C Holmes
Journal:  Genetics       Date:  2018-12       Impact factor: 4.562

2.  Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera-hosted coronaviruses: SARS-CoV, MERS-CoV and SARS-CoV-2.

Authors:  Denis Jacob Machado; Rachel Scott; Sayal Guirales; Daniel A Janies
Journal:  Cladistics       Date:  2021-04-26       Impact factor: 5.254

3.  Picornaviral polymerase domain exchanges reveal a modular basis for distinct biochemical activities of viral RNA-dependent RNA polymerases.

Authors:  Colleen L Watkins; Brian J Kempf; Stéphanie Beaucourt; David J Barton; Olve B Peersen
Journal:  J Biol Chem       Date:  2020-06-03       Impact factor: 5.157

4.  Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation.

Authors:  Brian R Wasik; Ian E H Voorhees; Karen N Barnard; Brynn K Alford-Lawrence; Wendy S Weichert; Grace Hood; Aitor Nogales; Luis Martínez-Sobrido; Edward C Holmes; Colin R Parrish
Journal:  J Virol       Date:  2019-11-13       Impact factor: 5.103

5.  Analysis of Virus Population Profiles within Pigs Infected with Virulent Classical Swine Fever Viruses: Evidence for Bottlenecks in Transmission but Absence of Tissue-Specific Virus Variants.

Authors:  Camille Melissa Johnston; Ulrik Fahnøe; Louise Lohse; Jens Bukh; Graham J Belsham; Thomas Bruun Rasmussen
Journal:  J Virol       Date:  2020-09-15       Impact factor: 5.103

Review 6.  Progress of polio eradication and containment requirements after eradication.

Authors:  M Steven Oberste
Journal:  Transfusion       Date:  2018-12       Impact factor: 3.157

7.  The Evolution of Severe Acute Respiratory Syndrome Coronavirus-2 during Pandemic and Adaptation to the Host.

Authors:  Snawar Hussain; Sahibzada Tasleem Rasool; Shinu Pottathil
Journal:  J Mol Evol       Date:  2021-05-15       Impact factor: 3.973

8.  Rapid protein sequence evolution via compensatory frameshift is widespread in RNA virus genomes.

Authors:  Dongbin Park; Yoonsoo Hahn
Journal:  BMC Bioinformatics       Date:  2021-05-17       Impact factor: 3.169

Review 9.  Update and Supplementary Articles Proteins of SARS CoV-2, Which Causes COVID-19, and the Interacting Proteins.

Authors:  Francis K Yoshimoto; Lawrence J Berliner
Journal:  Protein J       Date:  2021-05-21       Impact factor: 2.371

10.  Survival of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Herpes Simplex Virus 1 (HSV-1) on Foods Stored at Refrigerated Temperature.

Authors:  Janak Dhakal; Mo Jia; Jonathan D Joyce; Greyson A Moore; Reza Ovissipour; Andrea S Bertke
Journal:  Foods       Date:  2021-05-04
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