Literature DB >> 29715010

Single Day Construction of Multigene Circuits with 3G Assembly.

Andrew D Halleran, Anandh Swaminathan, Richard M Murray.   

Abstract

The ability to rapidly design, build, and test prototypes is of key importance to every engineering discipline. DNA assembly often serves as a rate limiting step of the prototyping cycle for synthetic biology. Recently developed DNA assembly methods such as isothermal assembly and type IIS restriction enzyme systems take different approaches to accelerate DNA construction. We introduce a hybrid method, Golden Gate-Gibson (3G), that takes advantage of modular part libraries introduced by type IIS restriction enzyme systems and isothermal assembly's ability to build large DNA constructs in single pot reactions. Our method is highly efficient and rapid, facilitating construction of entire multigene circuits in a single day. Additionally, 3G allows generation of variant libraries enabling efficient screening of different possible circuit constructions. We characterize the efficiency and accuracy of 3G assembly for various construct sizes, and demonstrate 3G by characterizing variants of an inducible cell-lysis circuit.

Keywords:  Gibson assembly; Golden Gate assembly; assembly methods; genetic circuits

Mesh:

Substances:

Year:  2018        PMID: 29715010     DOI: 10.1021/acssynbio.8b00060

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  8 in total

1.  Assembly of Genetic Circuits with the Mammalian ToolKit.

Authors:  João P Fonseca; Alain R Bonny; Jason Town; Hana El-Samad
Journal:  Bio Protoc       Date:  2020-03-05

2.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

3.  A seamless and iterative DNA assembly method named PS-Brick and its assisted metabolic engineering for threonine and 1-propanol production.

Authors:  Shuwen Liu; Haihan Xiao; Fangfang Zhang; Zheng Lu; Yun Zhang; Aihua Deng; Zhongcai Li; Cui Yang; Tingyi Wen
Journal:  Biotechnol Biofuels       Date:  2019-07-15       Impact factor: 6.040

4.  Universal loop assembly: open, efficient and cross-kingdom DNA fabrication.

Authors:  Bernardo Pollak; Tamara Matute; Isaac Nuñez; Ariel Cerda; Constanza Lopez; Valentina Vargas; Anton Kan; Vincent Bielinski; Peter von Dassow; Chris L Dupont; Fernán Federici
Journal:  Synth Biol (Oxf)       Date:  2020-02-05

5.  Nimble Cloning: A Simple, Versatile, and Efficient System for Standardized Molecular Cloning.

Authors:  Pu Yan; Yanjing Zeng; Wentao Shen; Decai Tuo; Xiaoying Li; Peng Zhou
Journal:  Front Bioeng Biotechnol       Date:  2020-01-15

6.  Synthetic Translational Regulation by Protein-Binding RNA Origami Scaffolds.

Authors:  Michael T A Nguyen; Georgios Pothoulakis; Ebbe S Andersen
Journal:  ACS Synth Biol       Date:  2022-04-19       Impact factor: 5.249

7.  Layered feedback control overcomes performance trade-off in synthetic biomolecular networks.

Authors:  Chelsea Y Hu; Richard M Murray
Journal:  Nat Commun       Date:  2022-09-14       Impact factor: 17.694

8.  Control of Multigene Expression Stoichiometry in Mammalian Cells Using Synthetic Promoters.

Authors:  Yash D Patel; Adam J Brown; Jie Zhu; Guglielmo Rosignoli; Suzanne J Gibson; Diane Hatton; David C James
Journal:  ACS Synth Biol       Date:  2021-05-03       Impact factor: 5.110

  8 in total

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